Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 2.0e-94 349.7 277 100.0
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 8.7e-66 254.6 261 86.6
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 2.8e-64 249.6 278 83.8
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 2.0e-62 243.4 267 82.4
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 2.2e-61 240.0 265 82.3
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 1.9e-60 236.9 268 81.3
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.9e-60 236.9 268 81.3
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.9e-60 236.9 253 85.0
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.9e-60 236.9 253 85.0
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.9e-60 236.9 268 80.2
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 2.5e-60 236.5 264 83.0
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 4.2e-60 235.7 252 85.7
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 5.5e-60 235.3 264 81.4
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 5.5e-60 235.3 264 81.8
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 9.3e-60 234.6 276 77.5
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 1.2e-59 234.2 266 81.2
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 1.2e-59 234.2 265 80.4
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.6e-59 233.8 265 81.1
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 2.7e-59 233.0 269 80.3
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 2.7e-59 233.0 261 81.6
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 2.7e-59 233.0 261 81.6
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 3.6e-59 232.6 264 81.8
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 4.6e-59 232.3 249 82.7
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 4.6e-59 232.3 275 78.2
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 4.6e-59 232.3 265 81.1
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 6.1e-59 231.9 266 82.0
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 6.1e-59 231.9 266 82.0
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 7.9e-59 231.5 265 80.8
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 7.9e-59 231.5 261 81.6
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 1.0e-58 231.1 265 79.2
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 1.0e-58 231.1 260 81.5
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 1.0e-58 231.1 265 79.2
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 1.3e-58 230.7 267 82.0
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 1.8e-58 230.3 273 78.8
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 1.8e-58 230.3 273 78.8
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 1.8e-58 230.3 265 80.4
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 1.8e-58 230.3 267 81.3
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 3.0e-58 229.6 268 77.2
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 3.9e-58 229.2 264 71.2
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 3.9e-58 229.2 261 80.5
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 6.7e-58 228.4 273 78.4
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 6.7e-58 228.4 250 83.2
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 8.7e-58 228.0 261 80.1
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 8.7e-58 228.0 261 80.1
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 8.7e-58 228.0 266 81.2
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 1.5e-57 227.3 267 79.4
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 2.5e-57 226.5 268 77.6
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 2.5e-57 226.5 261 79.3
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 4.3e-57 225.7 265 78.1
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 4.3e-57 225.7 276 77.5
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 4.3e-57 225.7 252 82.5
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 5.7e-57 225.3 277 77.6
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 5.7e-57 225.3 277 77.6
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 5.7e-57 225.3 274 78.5
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 5.7e-57 225.3 250 81.2
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 5.7e-57 225.3 265 81.5
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 7.4e-57 224.9 252 82.5
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 7.4e-57 224.9 252 82.5
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 9.7e-57 224.6 250 83.6
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 1.6e-56 223.8 273 77.7
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 1.6e-56 223.8 281 77.2
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 1.6e-56 223.8 265 80.0
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 1.6e-56 223.8 262 79.4
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 2.2e-56 223.4 273 76.6
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 2.8e-56 223.0 278 78.8
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 2.8e-56 223.0 278 78.8
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 2.8e-56 223.0 275 77.5
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 2.8e-56 223.0 276 77.5
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 3.7e-56 222.6 275 77.5
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 3.7e-56 222.6 278 78.8
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 3.7e-56 222.6 278 78.8
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 4.8e-56 222.2 271 79.0
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 4.8e-56 222.2 264 79.9
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 6.3e-56 221.9 278 78.1
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 6.3e-56 221.9 275 77.1
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 8.2e-56 221.5 266 77.4
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 8.2e-56 221.5 277 76.9
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 1.1e-55 221.1 266 72.6
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.4e-55 220.7 264 79.9
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 1.8e-55 220.3 276 78.6
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 3.1e-55 219.5 269 77.3
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 4.1e-55 219.2 273 77.3
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 4.1e-55 219.2 266 74.4
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 6.9e-55 218.4 271 77.9
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 1.2e-54 217.6 255 80.0
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 2.0e-54 216.9 269 77.7
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 2.0e-54 216.9 273 76.2
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 2.6e-54 216.5 276 76.4
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 2.6e-54 216.5 243 83.5
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 3.4e-54 216.1 273 78.0
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 3.4e-54 216.1 266 78.6
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 3.4e-54 216.1 267 76.0
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 7.7e-54 214.9 273 78.0
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 7.7e-54 214.9 273 78.0
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 1.3e-53 214.2 273 77.7
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 1.3e-53 214.2 269 77.3
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 1.3e-53 214.2 267 79.4
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 2.9e-53 213.0 239 85.4
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 8.5e-53 211.5 265 78.9
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 2.5e-52 209.9 265 78.9
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 1.6e-51 207.2 272 76.5
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 1.6e-51 207.2 250 76.4
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 2.1e-51 206.8 271 75.3
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 2.7e-51 206.5 250 79.6
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 2.7e-51 206.5 250 74.4
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 6.1e-51 205.3 268 76.1
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 6.1e-51 205.3 250 79.2
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 6.1e-51 205.3 266 75.2
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 1.0e-50 204.5 258 77.1
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 1.0e-50 204.5 267 74.9
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 1.0e-50 204.5 273 75.1
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 3.0e-50 203.0 257 79.8
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 3.9e-50 202.6 265 74.7
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 8.8e-50 201.4 266 74.8
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 1.1e-49 201.1 271 51.7
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 2.0e-49 200.3 266 75.9
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 2.6e-49 199.9 253 80.6
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 1.7e-48 197.2 261 74.7
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 2.2e-48 196.8 261 73.6
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 2.2e-48 196.8 261 73.6
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 4.5e-46 189.1 228 86.0
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 7.7e-46 188.3 273 72.2
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 1.0e-45 188.0 216 87.5
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 1.0e-45 188.0 265 72.8
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 1.7e-45 187.2 217 88.5
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 1.7e-45 187.2 265 75.8
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 2.2e-45 186.8 267 75.3
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 2.9e-45 186.4 227 84.1
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 1.4e-44 184.1 229 83.4
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 2.5e-44 183.3 267 73.4
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 5.5e-44 182.2 266 69.9
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 9.4e-44 181.4 274 41.6
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 9.4e-44 181.4 257 72.8
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 2.7e-43 179.9 252 68.3
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 6.1e-43 178.7 264 71.2
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 1.0e-42 177.9 252 73.8
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.4e-42 177.6 223 82.5
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 1.8e-42 177.2 264 67.4
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 4.4e-41 172.6 250 72.4
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 1.8e-39 167.2 272 58.8
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 4.2e-36 156.0 198 86.4
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 2.1e-35 153.7 237 77.6
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 1.4e-31 141.0 191 84.8
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 2.7e-30 136.7 94 69.1
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 1.9e-28 130.6 83 74.7
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 5.5e-28 129.0 85 72.9
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 1.8e-26 124.0 207 79.7
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 1.8e-26 124.0 94 67.0
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 4.4e-25 119.4 265 53.6
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 4.8e-24 115.9 272 61.8
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 2.4e-23 113.6 261 65.1
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 5.4e-23 112.5 253 58.9
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 2.0e-22 110.5 83 67.5
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 1.1e-20 104.8 86 66.3
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 6.1e-19 99.0 81 58.0
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 1.1e-15 88.2 67 68.7
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 4.4e-09 66.2 61 59.0
RcHm_v2.0_Chr2g0084611 Rosa chinensis HOM05D000094 ORTHO05D001056 1.8e-07 60.8 85 37.6
HanXRQChr05g0162291 Helianthus annuus HOM05D004527 ORTHO05D005335 9.2e-07 58.5 65 52.3
AUR62008062 Chenopodium quinoa HOM05D000094 ORTHO05D001056 3.5e-06 56.6 91 38.5
ATR0730G160 Amborella trichopoda HOM05D004527 ORTHO05D005335 5.9e-06 55.8 52 48.1


User provided reference genes

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