Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold2682G54177 Striga asiatica HOM05D002737 ORTHO05D009499 1.2e-179 634.0 411 100.0
MSTRG.24256 Avicennia marina HOM05D002737 ORTHO05D009499 3.6e-67 260.4 413 60.0
Peaxi162Scf00170g10129 Petunia axillaris HOM05D002737 ORTHO05D009499 1.2e-59 235.3 373 60.3
PGSC0003DMG400017527 Solanum tuberosum HOM05D002737 ORTHO05D009499 2.8e-59 234.2 365 61.9
Gorai.009G005800 Gossypium raimondii HOM05D002737 ORTHO05D009499 2.1e-51 208.0 370 59.2
Sopen08g025230 Solanum pennellii HOM05D002737 ORTHO05D009499 2.8e-51 207.6 365 59.5
Gohir.A05G005000 Gossypium hirsutum HOM05D002737 ORTHO05D009499 8.1e-51 206.1 363 60.1
Solyc08g076680.3 Solanum lycopersicum HOM05D002737 ORTHO05D009499 8.1e-51 206.1 365 59.2
THA.LOC104815482 Tarenaya hassleriana HOM05D002737 ORTHO05D009499 3.8e-48 197.2 161 60.9
Duzib150G1285 Durio zibethinus HOM05D002737 ORTHO05D009499 4.6e-46 190.3 376 55.3
QL07p000693 Quercus lobata HOM05D002737 ORTHO05D009499 3.9e-45 187.2 368 56.5
Thecc.09G177100 Theobroma cacao HOM05D002737 ORTHO05D009499 3.3e-44 184.1 396 54.8
Nitab4.5_0002710g0020 Nicotiana tabacum HOM05D002737 ORTHO05D009499 9.6e-44 182.6 372 55.4
CAN.G298.36 Capsicum annuum HOM05D002737 ORTHO05D009499 2.1e-43 181.4 373 55.5
QL12p006767 Quercus lobata HOM05D002737 ORTHO05D009499 5.3e-42 176.8 368 55.7
Migut.N03143 Erythranthe guttata HOM05D002737 ORTHO05D009499 4.5e-41 173.7 182 54.4
Cc09_g09400 Coffea canephora HOM05D002737 ORTHO05D009499 2.2e-40 171.4 417 51.8
Glyma.02G281800 Glycine max HOM05D002737 ORTHO05D009499 4.9e-40 170.2 356 57.0
Lalb_Chr10g0106441 Lupinus albus HOM05D002737 ORTHO05D009499 6.4e-40 169.9 365 55.1
PGR004G0661 Punica granatum HOM05D002737 ORTHO05D009499 8.4e-40 169.5 220 43.2
MBI15_g18195_MAGBIO Magnolia biondii HOM05D002737 ORTHO05D009499 3.2e-39 167.5 253 41.1
Ciclev10030202m.g Citrus clementina HOM05D002737 ORTHO05D009499 1.2e-38 165.6 423 51.1
Nitab4.5_0000486g0240 Nicotiana tabacum HOM05D002737 ORTHO05D009499 3.5e-38 164.1 375 53.6
ATR1089G116 Amborella trichopoda HOM05D002737 ORTHO05D009499 6.0e-38 163.3 209 42.6
Atru.chr1.2354 Acer truncatum HOM05D002737 ORTHO05D009499 3.9e-37 160.6 415 52.3
Medtr7g451470 Medicago truncatula HOM05D002737 ORTHO05D009499 5.1e-37 160.2 304 39.1
Lsat_1_v5_gn_0_32461 Lactuca sativa HOM05D002221 ORTHO05D009499 3.3e-36 157.5 203 44.3
Lsat_1_v5_gn_6_62361 Lactuca sativa HOM05D002737 ORTHO05D009499 3.3e-36 157.5 203 44.3
VMungo0647G0538 Vigna mungo HOM05D002737 ORTHO05D009499 2.1e-35 154.8 380 53.2
Potri.006G015900 Populus trichocarpa HOM05D002737 ORTHO05D009499 2.8e-35 154.5 375 51.7
COL.COLO4_37708 Corchorus olitorius HOM05D002737 ORTHO05D009499 4.8e-35 153.7 138 59.4
Phvul.008G197500 Phaseolus vulgaris HOM05D002737 ORTHO05D009499 4.8e-35 153.7 363 54.3
Medtr5g090170 Medicago truncatula HOM05D002737 ORTHO05D009499 1.1e-34 152.5 363 54.5
Rhsim02G0096600 Rhododendron simsii HOM05D002737 ORTHO05D009499 1.4e-34 152.1 172 53.5
RcHm_v2.0_Chr7g0222741 Rosa chinensis HOM05D002737 ORTHO05D009499 1.4e-34 152.1 416 49.5
vmacro15753 Vaccinium macrocarpon HOM05D002737 ORTHO05D009499 1.4e-34 152.1 169 51.5
Ca_21649_v3 Cicer arietinum L. HOM05D002737 ORTHO05D009499 1.8e-34 151.8 390 51.8
Sc17g0007920 Simmondsia chinensis HOM05D002221 ORTHO05D002626 1.8e-34 151.8 390 51.0
TAR629G1995 Trochodendron aralioides HOM05D002737 ORTHO05D009499 3.1e-34 151.0 389 51.9
Psat2g018000 Pisum sativum HOM05D000461 ORTHO05D001840 6.9e-34 149.8 365 53.2
Sabra06G0011300 Salix brachista HOM05D002221 ORTHO05D002626 1.2e-33 149.1 203 44.3
TPR.G8770 Trifolium pratense HOM05D002737 ORTHO05D009499 1.2e-33 149.1 371 52.8
Lj2g0004520 Lotus japonicus HOM05D002737 ORTHO05D009499 2.6e-33 147.9 378 52.1
MELO3C025545.2 Cucumis melo HOM05D000064 ORTHO05D005795 4.5e-33 147.1 378 51.3
Dinv05011 Davidia involucrata HOM05D002737 ORTHO05D009499 1.7e-32 145.2 132 56.1
Dinv19888 Davidia involucrata HOM05D002737 ORTHO05D009499 1.7e-32 145.2 132 56.1
TWI32G0479 Tripterygium wilfordii HOM05D002737 ORTHO05D009499 2.2e-32 144.8 236 38.6
Haze_06964 Corylus avellana HOM05D002737 ORTHO05D009499 3.8e-32 144.1 177 46.9
CsaV3_1G017070 Cucumis sativus L. HOM05D002737 ORTHO05D009499 6.5e-32 143.3 371 51.2
CsaV3_UNG047340 Cucumis sativus L. HOM05D002737 ORTHO05D009499 6.5e-32 143.3 371 51.2
THA.LOC104820557 Tarenaya hassleriana HOM05D002737 ORTHO05D009499 8.4e-32 142.9 189 44.4
Manes.14G036700 Manihot esculenta HOM05D002737 ORTHO05D009499 1.1e-31 142.5 174 50.6
CSS0001218 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D009499 1.4e-31 142.1 136 57.4
CSS0040963 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D009499 1.4e-31 142.1 136 57.4
ECA248G3231 Erigeron canadensis HOM05D002737 ORTHO05D009499 1.4e-31 142.1 368 52.2
Cpa.g.sc1.94 Carica papaya HOM05D002737 ORTHO05D009499 2.5e-31 141.4 179 47.5
FAN18G3677 Fragaria x ananassa HOM05D002737 ORTHO05D009499 2.5e-31 141.4 382 50.3
CiPaw.10G079400 Carya illinoinensis HOM05D002737 ORTHO05D009499 3.2e-31 141.0 148 50.7
Oeu052869.2 Olea europaea HOM05D002221 ORTHO05D002626 4.2e-31 140.6 204 80.9
HanXRQChr08g0207951 Helianthus annuus HOM05D002737 ORTHO05D009499 7.1e-31 139.8 378 50.5
Cfa000079 Carpinus fangiana HOM05D002737 ORTHO05D009499 9.3e-31 139.4 177 46.9
Nitab4.5_0000353g0140 Nicotiana tabacum HOM05D002737 ORTHO05D009499 1.6e-30 138.7 133 54.1
AL8G41680 Arabidopsis lyrata HOM05D002737 ORTHO05D009499 2.1e-30 138.3 418 47.8
GSVIVG01002056001 Vitis vinifera HOM05D002737 ORTHO05D009499 2.7e-30 137.9 137 55.5
CDE04G0992 Ceratophyllum demersum HOM05D000439 ORTHO05D009499 3.5e-30 137.5 130 53.1
FvH4_5g29651 Fragaria vesca HOM05D002737 ORTHO05D009499 7.9e-30 136.3 221 38.9
Peaxi162Scf00170g00135 Petunia axillaris HOM05D002737 ORTHO05D009499 7.9e-30 136.3 206 59.2
Sed0007517 Sechium edule HOM05D002737 ORTHO05D009499 7.9e-30 136.3 366 51.4
Carub.0008s2511 Capsella rubella HOM05D002737 ORTHO05D009499 3.9e-29 134.0 370 49.7
Lsat_1_v5_gn_6_62401 Lactuca sativa HOM05D002737 ORTHO05D009499 1.1e-28 132.5 99 63.6
Aa31LG1G17580 Aethionema arabicum HOM05D002737 ORTHO05D009499 1.5e-28 132.1 97 68.0
ClCG01G010600 Citrullus lanatus HOM05D000064 ORTHO05D005795 4.3e-28 130.6 371 50.9
Eucgr.D00175 Eucalyptus grandis HOM05D002737 ORTHO05D009499 5.7e-28 130.2 133 54.1
AUR62012820 Chenopodium quinoa HOM05D002737 ORTHO05D009499 1.3e-27 129.0 185 41.1
AT5G64320 Arabidopsis thaliana HOM05D002737 ORTHO05D009499 2.2e-27 128.3 147 49.7
EL10Ac8g20226 Beta vulgaris HOM05D002221 ORTHO05D010139 2.2e-27 128.3 174 42.0
MD02G1307900 Malus domestica HOM05D002737 ORTHO05D009499 4.8e-27 127.1 164 47.0
Nn5g27862 Nelumbo nucifera HOM05D002737 ORTHO05D009499 6.3e-27 126.7 146 49.3
Sp2g27380 Schrenkiella parvula HOM05D002737 ORTHO05D009499 8.2e-27 126.3 97 62.9
CARHR278250 Cardamine hirsuta HOM05D002737 ORTHO05D009499 1.1e-26 125.9 144 49.3
PSO700G0272 Papaver somniferum HOM05D002737 ORTHO05D009499 1.4e-26 125.6 378 48.1
FAN08G2833 Fragaria x ananassa HOM05D001182 ORTHO05D008051 3.1e-26 124.4 121 53.7
Ah.09g234090 Amaranthus hybridus HOM05D002737 ORTHO05D009499 2.0e-25 121.7 129 49.6
Aqoxy5G01927 Aquilegia oxysepala HOM05D002737 ORTHO05D009499 2.6e-25 121.3 115 55.7
arahy.Tifrunner.gnm1.ann1.M7R72C Arachis hypogaea HOM05D002737 ORTHO05D009499 1.0e-24 119.4 129 51.9
arahy.Tifrunner.gnm1.ann1.RRP5UF Arachis hypogaea HOM05D002737 ORTHO05D009499 1.3e-24 119.0 129 51.9
HPP92_009571 Vanilla planifolia HOM05D002737 ORTHO05D009499 1.3e-24 119.0 351 51.3
A02p43270 Brassica napus HOM05D002737 ORTHO05D009499 5.0e-24 117.1 145 47.6
Prupe.4G007800 Prunus persica HOM05D002737 ORTHO05D009499 4.2e-23 114.0 123 52.0
BraA02t09251Z Brassica rapa HOM05D002737 ORTHO05D009499 7.2e-23 113.2 147 47.6
BcaC03g18256 Brassica carinata HOM05D002737 ORTHO05D009499 1.0e-21 109.4 170 42.9
C02p63290 Brassica napus HOM05D002737 ORTHO05D009499 1.0e-21 109.4 170 42.9
BolC2t12398H Brassica oleracea HOM05D002737 ORTHO05D009499 1.0e-21 109.4 170 42.9
Gohir.D05G005900 Gossypium hirsutum HOM05D002737 ORTHO05D009499 2.0e-17 95.1 74 59.5
Actinidia39277 Actinidia chinensis HOM05D002737 ORTHO05D009499 5.9e-17 93.6 136 42.6
FAN04G2121 Fragaria x ananassa HOM05D002737 ORTHO05D009499 5.0e-16 90.5 156 39.7
Lj1P1242T55 Lonicera japonica HOM05D002737 ORTHO05D009499 2.5e-15 88.2 74 52.7
Glyma.14G032600 Glycine max HOM05D002737 ORTHO05D009499 2.7e-14 84.7 67 58.2
Nitab4.5_0000353g0130 Nicotiana tabacum HOM05D002737 ORTHO05D009499 7.9e-14 83.2 74 52.7
SEGI_32765 Sequoiadendron giganteum HOM05D002737 ORTHO05D009499 5.1e-13 80.5 122 36.1
Os10g0368902 Oryza sativa ssp. japonica HOM05D028837 ORTHO05D030418 1.5e-12 79.0 189 69.3
Hund20037 Selenicereus undatus HOM05D007469 ORTHO05D009499 1.5e-12 79.0 314 51.3
Oeu052840.1 Olea europaea HOM05D002737 ORTHO05D009499 1.3e-11 75.9 237 62.0
BcaB07g29735 Brassica carinata HOM05D002737 ORTHO05D009499 2.8e-11 74.7 326 48.2
Thhalv10005307m.g Eutrema salsugineum HOM05D002737 ORTHO05D009499 4.8e-11 73.9 55 63.6
PGSC0003DMG400008614 Solanum tuberosum HOM05D001726 ORTHO05D018885 1.3e-08 65.9 44 70.5
Peaxi162Scf00170g01346 Petunia axillaris HOM05D002737 ORTHO05D009499 6.5e-08 63.5 67 47.8
AUR62039554 Chenopodium quinoa HOM05D000424 ORTHO05D000355 1.4e-07 62.4 110 33.6
Carub.0001s1888 Capsella rubella HOM05D007639 ORTHO05D009509 1.9e-07 62.0 73 35.6
HanXRQChr17g0563611 Helianthus annuus HOM05D002737 ORTHO05D009499 1.9e-07 62.0 35 74.3
MSTRG.10608 Avicennia marina HOM05D000424 ORTHO05D000355 3.2e-07 61.2 90 34.4
Cpa.g.sc9.15 Carica papaya HOM05D007409 ORTHO05D009264 3.2e-07 61.2 75 38.7
TAR623G1146 Trochodendron aralioides HOM05D005973 ORTHO05D007285 3.2e-07 61.2 155 26.5
Gohir.A07G091500 Gossypium hirsutum HOM05D007486 ORTHO05D003673 4.2e-07 60.8 163 26.4
Pp3c5_26320 Physcomitrium patens HOM05D000424 ORTHO05D000355 4.2e-07 60.8 123 26.8
A08p29890 Brassica napus HOM05D007639 ORTHO05D009509 5.5e-07 60.5 75 37.3
Cfa006779 Carpinus fangiana HOM05D000424 ORTHO05D000355 5.5e-07 60.5 90 34.4
TWI59G0940 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 5.5e-07 60.5 105 30.5
arahy.Tifrunner.gnm1.ann1.72G1G0 Arachis hypogaea HOM05D000891 ORTHO05D000761 7.2e-07 60.1 78 39.7
Sed0020730 Sechium edule HOM05D000424 ORTHO05D000355 7.2e-07 60.1 90 33.3
arahy.Tifrunner.gnm1.ann1.W2W9XI Arachis hypogaea HOM05D000104 ORTHO05D009920 9.4e-07 59.7 70 35.7
Haze_15788 Corylus avellana HOM05D002391 ORTHO05D003966 9.4e-07 59.7 117 29.9
CsaV3_5G014140 Cucumis sativus L. HOM05D000424 ORTHO05D000355 9.4e-07 59.7 90 33.3
Lj1g0027291 Lotus japonicus HOM05D002391 ORTHO05D003966 9.4e-07 59.7 105 31.4
Lalb_Chr03g0040111 Lupinus albus HOM05D000104 ORTHO05D009920 9.4e-07 59.7 71 35.2
Nn2g14733 Nelumbo nucifera HOM05D000424 ORTHO05D000355 9.4e-07 59.7 89 32.6
PGSC0003DMG400015852 Solanum tuberosum HOM05D001726 ORTHO05D018885 9.4e-07 59.7 47 63.8
SGA_v2.0_scaffold373G50176 Striga asiatica HOM05D000424 ORTHO05D000355 9.4e-07 59.7 90 33.3
AagrBONN_evm.TU.Sc2ySwM_362.2678__2679 Anthoceros agrestis HOM05D006749 ORTHO05D008352 1.2e-06 59.3 99 30.3
Ciclev10023955m.g Citrus clementina HOM05D002391 ORTHO05D003966 1.2e-06 59.3 105 30.5
AT1G19290 Arabidopsis thaliana HOM05D007639 ORTHO05D009509 1.6e-06 58.9 73 38.4
arahy.Tifrunner.gnm1.ann1.2A943I Arachis hypogaea HOM05D000891 ORTHO05D000761 1.6e-06 58.9 78 39.7
BcaC07g38995 Brassica carinata HOM05D007639 ORTHO05D009509 1.6e-06 58.9 75 37.3
BolC8t49556H Brassica oleracea HOM05D007639 ORTHO05D009509 1.6e-06 58.9 75 37.3
CSS0011638 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 1.6e-06 58.9 90 33.3
CSS0044152 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 1.6e-06 58.9 90 33.3
Cfa003698 Carpinus fangiana HOM05D002391 ORTHO05D003966 1.6e-06 58.9 106 29.2
DCAR_025825 Daucus carota HOM05D000424 ORTHO05D000355 1.6e-06 58.9 90 33.3
Sp1g17190 Schrenkiella parvula HOM05D007639 ORTHO05D009509 1.6e-06 58.9 73 37.0
TAR381G0265 Trochodendron aralioides HOM05D000424 ORTHO05D000355 1.6e-06 58.9 90 32.2
Actinidia08438 Actinidia chinensis HOM05D000162 ORTHO05D000090 2.1e-06 58.5 61 42.6
Cc09_g07760 Coffea canephora HOM05D005973 ORTHO05D007285 2.1e-06 58.5 156 27.6
CiPaw.07G037000 Carya illinoinensis HOM05D000424 ORTHO05D000355 2.7e-06 58.2 90 33.3
ClCG01G017840 Citrullus lanatus HOM05D000424 ORTHO05D000355 2.7e-06 58.2 90 32.2
Gohir.D07G020400 Gossypium hirsutum HOM05D008470 ORTHO05D010644 2.7e-06 58.2 63 42.9
Gorai.001G021200 Gossypium raimondii HOM05D008470 ORTHO05D010644 2.7e-06 58.2 63 42.9
SHI24439 Sapria himalayana HOM05D002737 ORTHO05D009499 2.7e-06 58.2 148 27.7
Ah.03g140170 Amaranthus hybridus HOM05D000424 ORTHO05D000355 3.6e-06 57.8 92 31.5
C08p19350 Brassica napus HOM05D007639 ORTHO05D009509 3.6e-06 57.8 75 37.3
Ca_09548_v3 Cicer arietinum L. HOM05D002391 ORTHO05D003966 3.6e-06 57.8 105 28.6
Dinv26965 Davidia involucrata HOM05D000424 ORTHO05D000355 3.6e-06 57.8 89 31.5
Nitab4.5_0000316g0260 Nicotiana tabacum HOM05D005973 ORTHO05D007285 3.6e-06 57.8 156 28.2
Sabra14G0078000 Salix brachista HOM05D002391 ORTHO05D003966 3.6e-06 57.8 106 28.3
SGA_v2.0_scaffold13G06403 Striga asiatica HOM05D000424 ORTHO05D000355 3.6e-06 57.8 90 33.3
Actinidia01390 Actinidia chinensis HOM05D000424 ORTHO05D000355 4.7e-06 57.4 90 32.2
Lj4P166T39 Lonicera japonica HOM05D000424 ORTHO05D000355 4.7e-06 57.4 90 34.4
Lj7A578T58 Lonicera japonica HOM05D005973 ORTHO05D007285 4.7e-06 57.4 155 26.5
Oeu013346.1 Olea europaea HOM05D000424 ORTHO05D000355 4.7e-06 57.4 90 34.4
SalBow5G1594 Salvia bowleyana HOM05D000424 ORTHO05D000355 4.7e-06 57.4 90 32.2
arahy.Tifrunner.gnm1.ann1.UTK222 Arachis hypogaea HOM05D000104 ORTHO05D009920 6.1e-06 57.0 71 33.8
CARHR019880 Cardamine hirsuta HOM05D007639 ORTHO05D009509 6.1e-06 57.0 72 36.1
AUR62004038 Chenopodium quinoa HOM05D000424 ORTHO05D000355 6.1e-06 57.0 92 30.4
MELO3C026690.2 Cucumis melo HOM05D000424 ORTHO05D000355 6.1e-06 57.0 90 31.1
PGR102G2719 Punica granatum HOM05D000424 ORTHO05D000355 6.1e-06 57.0 90 33.3
vmacro19755 Vaccinium macrocarpon HOM05D005973 ORTHO05D007285 6.1e-06 57.0 155 27.1
Aqoxy2G00263 Aquilegia oxysepala HOM05D005973 ORTHO05D007285 8.0e-06 56.6 155 26.5
Aqoxy6G02961 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 8.0e-06 56.6 89 31.5
AL1G31880 Arabidopsis lyrata HOM05D007639 ORTHO05D009509 8.0e-06 56.6 73 37.0
arahy.Tifrunner.gnm1.ann1.H4NKJU Arachis hypogaea HOM05D000104 ORTHO05D009920 8.0e-06 56.6 71 33.8
Cpa.g.sc65.121 Carica papaya HOM05D000424 ORTHO05D000355 8.0e-06 56.6 89 33.7
Dinv32060 Davidia involucrata HOM05D005973 ORTHO05D007285 8.0e-06 56.6 153 27.5
Eucgr.H02347 Eucalyptus grandis HOM05D000424 ORTHO05D000355 8.0e-06 56.6 90 33.3
Mapoly0001s0500 Marchantia polymorpha HOM05D043813 ORTHO05D009264 8.0e-06 56.6 114 30.7
Mapoly0096s0019 Marchantia polymorpha HOM05D004079 ORTHO05D005437 8.0e-06 56.6 121 28.1
Medtr7g044790 Medicago truncatula HOM05D000104 ORTHO05D009920 8.0e-06 56.6 71 36.6
QL02p049542 Quercus lobata HOM05D000424 ORTHO05D000355 8.0e-06 56.6 90 32.2
QL08p038611 Quercus lobata HOM05D000424 ORTHO05D000355 8.0e-06 56.6 90 32.2


User provided reference genes

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