Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 8.5e-196 686.8 341 100.0
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 1.8e-161 572.8 341 86.5
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 4.9e-135 485.0 343 71.7
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 1.4e-129 466.8 342 71.1
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 1.4e-129 466.8 343 70.3
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 9.9e-120 434.1 347 66.6
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 9.6e-115 417.5 349 62.8
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 1.3e-114 417.2 312 68.9
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.6e-114 416.8 332 65.1
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 1.6e-114 416.8 349 62.8
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 2.8e-114 416.0 315 67.6
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 1.1e-113 414.1 332 64.8
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 2.4e-113 412.9 353 61.8
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 3.1e-113 412.5 323 66.9
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 4.0e-113 412.1 289 70.6
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 5.3e-113 411.8 272 73.9
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 5.3e-113 411.8 334 65.0
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 5.3e-113 411.8 303 69.6
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 5.3e-113 411.8 322 65.8
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 6.9e-113 411.4 332 64.2
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 9.0e-113 411.0 330 65.8
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 9.0e-113 411.0 282 72.0
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 1.5e-112 410.2 314 66.6
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 2.0e-112 409.8 278 73.4
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 2.6e-112 409.5 323 66.9
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 7.6e-112 407.9 292 70.2
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 1.3e-111 407.1 278 71.6
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 1.7e-111 406.8 296 69.6
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 1.7e-111 406.8 316 66.5
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 2.2e-111 406.4 293 70.0
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 3.8e-111 405.6 296 67.9
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 3.8e-111 405.6 313 65.8
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 4.9e-111 405.2 276 73.2
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 4.9e-111 405.2 303 68.3
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 6.4e-111 404.8 327 63.9
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.2e-110 402.5 318 65.7
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 3.2e-110 402.5 318 65.7
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 3.2e-110 402.5 329 62.3
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 4.2e-110 402.1 294 68.4
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 5.4e-110 401.7 294 67.3
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 7.1e-110 401.4 318 65.4
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 1.6e-109 400.2 335 63.0
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 1.6e-109 400.2 307 66.4
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 2.7e-109 399.4 275 70.2
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 7.9e-109 397.9 313 63.9
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 1.3e-108 397.1 278 70.5
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 2.3e-108 396.4 305 64.9
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 3.0e-108 396.0 342 62.0
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 3.0e-108 396.0 316 65.2
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 3.0e-108 396.0 287 70.0
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 5.1e-108 395.2 292 69.2
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 5.1e-108 395.2 301 67.1
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 6.6e-108 394.8 278 70.1
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 8.7e-108 394.4 280 70.0
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 1.1e-107 394.0 314 62.1
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 1.1e-107 394.0 285 68.4
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 1.1e-107 394.0 304 66.1
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 1.9e-107 393.3 280 70.0
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 2.5e-107 392.9 285 67.4
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 2.5e-107 392.9 274 71.5
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 5.6e-107 391.7 280 68.9
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 7.4e-107 391.3 285 68.1
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 7.4e-107 391.3 323 62.8
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 1.3e-106 390.6 316 63.9
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 1.6e-106 390.2 280 68.6
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.6e-106 390.2 302 65.9
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 1.6e-106 390.2 248 83.1
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 2.1e-106 389.8 330 62.1
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 2.8e-106 389.4 280 68.9
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 3.6e-106 389.0 283 69.3
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 1.8e-105 386.7 288 64.9
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 6.9e-105 384.8 274 70.1
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 2.6e-104 382.9 303 64.0
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 2.6e-104 382.9 299 65.2
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 3.4e-104 382.5 288 64.2
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 3.4e-104 382.5 277 69.3
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 7.6e-104 381.3 337 56.7
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 7.6e-104 381.3 287 66.6
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 1.3e-103 380.6 319 62.1
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 1.3e-103 380.6 293 66.9
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 6.4e-103 378.3 329 59.3
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 4.2e-102 375.6 319 61.4
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 9.3e-102 374.4 275 65.8
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 9.3e-102 374.4 330 58.8
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 2.1e-101 373.2 306 61.1
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 2.1e-101 373.2 275 67.6
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 4.6e-101 372.1 294 64.6
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 4.6e-101 372.1 277 66.1
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 1.3e-100 370.5 276 65.9
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 2.3e-100 369.8 292 65.4
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 6.7e-100 368.2 298 63.4
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 6.7e-100 368.2 277 65.7
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 1.5e-99 367.1 341 62.8
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 1.9e-99 366.7 324 60.2
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 3.4e-96 355.9 417 51.1
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 3.4e-96 355.9 340 57.4
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 8.4e-95 351.3 244 72.5
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 7.1e-94 348.2 335 54.9
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 4.6e-93 345.5 288 60.8
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 7.9e-93 344.7 314 58.9
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 3.0e-92 342.8 333 54.7
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 8.7e-92 341.3 306 58.2
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 5.3e-89 332.0 247 64.4
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 2.6e-88 329.7 278 62.6
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 2.6e-88 329.7 288 60.8
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 7.6e-88 328.2 281 60.1
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 1.3e-87 327.4 285 55.4
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 7.2e-86 321.6 284 60.2
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 6.7e-84 315.1 278 54.7
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 4.1e-81 305.8 270 58.1
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.6e-75 286.6 266 57.1
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 1.0e-71 274.6 244 58.2
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 1.6e-69 267.3 248 54.0
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 7.4e-67 258.5 199 66.8
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 7.0e-65 251.9 278 45.3
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 1.5e-62 244.2 251 55.4
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 2.5e-62 243.4 191 66.5
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 3.6e-61 239.6 283 47.0
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 8.0e-61 238.4 211 59.7
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 2.3e-60 236.9 272 44.9
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 2.0e-59 233.8 199 60.3
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 9.1e-57 224.9 177 65.5
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 5.5e-54 215.7 238 52.1
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.8e-52 210.7 131 77.9
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 5.2e-52 209.1 269 37.9
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.6e-51 206.8 129 76.7
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 9.8e-51 204.9 132 75.8
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 1.8e-49 200.7 224 50.9
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.8e-49 200.7 118 78.0
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 5.4e-49 199.1 130 72.3
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 4.2e-46 189.5 134 66.4
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 4.2e-46 189.5 112 77.7
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 3.6e-45 186.4 112 76.8
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 8.8e-44 181.8 263 40.3
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 8.8e-44 181.8 253 43.1
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 3.4e-43 179.9 114 71.9
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 1.3e-42 177.9 168 58.9
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 6.3e-42 175.6 104 78.8
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 8.6e-39 165.2 168 54.8
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 8.6e-39 165.2 168 54.8
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 5.6e-38 162.5 278 34.5
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 6.1e-37 159.1 92 80.4
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 2.6e-35 153.7 138 52.2
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 6.4e-34 149.1 82 80.5
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 8.3e-34 148.7 80 85.0
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 1.6e-32 144.4 254 36.2
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 1.5e-30 137.9 74 79.7
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 7.3e-30 135.6 76 78.9
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 6.2e-29 132.5 267 33.3
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 1.8e-28 131.0 69 85.5
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 4.0e-28 129.8 74 77.0
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.7e-23 114.4 56 87.5
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.0e-23 113.6 63 81.0
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 1.1e-22 111.7 88 62.5
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 1.5e-22 111.3 111 55.0
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 1.6e-21 107.8 56 83.9
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 6.2e-21 105.9 66 68.2
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 9.9e-19 98.6 65 72.3
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.0e-15 88.6 146 37.0
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 3.0e-15 87.0 47 78.7
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 3.0e-15 87.0 48 81.2
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.9e-14 84.3 59 59.3
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 1.4e-09 68.2 102 36.3
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 5.6e-06 56.2 74 43.2


User provided reference genes

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