Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold265G46105 Striga asiatica HOM05D005756 ORTHO05D007991 3.8e-246 854.4 428 100.0
SalBow1G7885 Salvia bowleyana HOM05D005756 ORTHO05D007991 2.8e-132 476.1 406 61.8
Migut.J01345 Erythranthe guttata HOM05D005756 ORTHO05D007991 3.1e-126 456.1 456 58.3
Migut.K00325 Erythranthe guttata HOM05D005756 ORTHO05D007991 1.1e-123 447.6 433 56.8
Oeu021293.1 Olea europaea HOM05D005756 ORTHO05D007991 2.4e-123 446.4 425 54.8
SalBow1G0676 Salvia bowleyana HOM05D005756 ORTHO05D007991 5.6e-120 435.3 406 57.1
CSS0006225 Camellia sinensis var. sinensis HOM05D005756 ORTHO05D007991 7.8e-114 414.8 429 52.9
Peaxi162Scf00802g00236 Petunia axillaris HOM05D005756 ORTHO05D007991 3.0e-113 412.9 436 51.8
FvH4_6g40720 Fragaria vesca HOM05D005756 ORTHO05D007991 3.9e-113 412.5 425 53.2
Peaxi162Scf00218g00178 Petunia axillaris HOM05D005756 ORTHO05D007991 3.3e-112 409.5 429 53.1
FAN14G2144 Fragaria x ananassa HOM05D005756 ORTHO05D007991 9.5e-112 407.9 425 52.7
CAN.G60.7 Capsicum annuum HOM05D005756 ORTHO05D007991 1.6e-111 407.1 429 52.9
FAN05G2330 Fragaria x ananassa HOM05D005756 ORTHO05D007991 2.3e-110 403.3 426 52.6
Oeu052200.1 Olea europaea HOM05D005756 ORTHO05D007991 5.2e-110 402.1 467 49.0
Sabra14G0126700 Salix brachista HOM05D005756 ORTHO05D007991 1.2e-109 401.0 432 53.0
FAN09G1647 Fragaria x ananassa HOM05D005756 ORTHO05D007991 1.3e-108 397.5 425 51.8
Potri.014G166400 Populus trichocarpa HOM05D005756 ORTHO05D007991 2.2e-108 396.7 432 51.6
GSVIVG01030075001 Vitis vinifera HOM05D005756 ORTHO05D007991 3.7e-108 396.0 434 52.1
Nitab4.5_0000006g0690 Nicotiana tabacum HOM05D005756 ORTHO05D007991 4.9e-108 395.6 409 52.6
RcHm_v2.0_Chr2g0156171 Rosa chinensis HOM05D005756 ORTHO05D007991 6.4e-108 395.2 425 51.8
Solyc05g041220.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 1.1e-107 394.4 436 51.1
Nn1g03213 Nelumbo nucifera HOM05D005756 ORTHO05D007991 5.4e-107 392.1 426 51.6
Rhsim04G0027400 Rhododendron simsii HOM05D005756 ORTHO05D007991 5.4e-107 392.1 464 49.4
MD09G1126000 Malus domestica HOM05D005756 ORTHO05D007991 7.1e-107 391.7 422 51.9
Haze_12636 Corylus avellana HOM05D005756 ORTHO05D007991 1.6e-106 390.6 431 51.7
TAR629G3088 Trochodendron aralioides HOM05D005756 ORTHO05D007991 1.3e-105 387.5 430 49.3
Actinidia18810 Actinidia chinensis HOM05D005756 ORTHO05D007991 5.6e-104 382.1 428 49.8
Gohir.A07G164300 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.6e-103 380.6 425 48.0
AT5G35770 Arabidopsis thaliana HOM05D005756 ORTHO05D007991 2.8e-103 379.8 439 46.7
Manes.12G064800 Manihot esculenta HOM05D005756 ORTHO05D007991 2.8e-103 379.8 437 49.4
AL7G44670 Arabidopsis lyrata HOM05D005756 ORTHO05D007991 3.6e-103 379.4 445 47.0
Actinidia35206 Actinidia chinensis HOM05D005756 ORTHO05D007991 1.1e-102 377.9 428 49.5
Gorai.001G191800 Gossypium raimondii HOM05D005756 ORTHO05D007991 4.0e-102 375.9 425 47.5
HanXRQChr11g0328881 Helianthus annuus HOM05D005756 ORTHO05D007991 4.0e-102 375.9 438 47.5
Aa31sc373G50 Aethionema arabicum HOM05D005756 ORTHO05D007991 5.2e-102 375.6 424 48.1
Gohir.D07G171500 Gossypium hirsutum HOM05D005756 ORTHO05D007991 6.8e-102 375.2 425 47.5
Nitab4.5_0010487g0010 Nicotiana tabacum HOM05D005756 ORTHO05D007991 1.5e-101 374.0 409 50.6
Manes.13G062400 Manihot esculenta HOM05D005756 ORTHO05D007991 3.4e-101 372.9 438 48.4
Oeu027646.1 Olea europaea HOM05D005756 ORTHO05D007991 3.4e-101 372.9 369 54.7
ECA236G0821 Erigeron canadensis HOM05D005756 ORTHO05D007991 4.4e-101 372.5 429 47.1
COL.COLO4_33341 Corchorus olitorius HOM05D005756 ORTHO05D007991 7.6e-101 371.7 427 48.2
Carub.0007s3155 Capsella rubella HOM05D005756 ORTHO05D007991 2.2e-100 370.2 424 47.2
Duzib133G1068 Durio zibethinus HOM05D005756 ORTHO05D007991 2.2e-100 370.2 439 48.3
Lsat_1_v5_gn_7_97180 Lactuca sativa HOM05D005756 ORTHO05D007991 1.9e-99 367.1 438 45.9
PSO675G1451 Papaver somniferum HOM05D005756 ORTHO05D007991 1.9e-99 367.1 417 49.6
THA.LOC104815437 Tarenaya hassleriana HOM05D005756 ORTHO05D007991 1.9e-99 367.1 430 47.2
Thecc.01G193500 Theobroma cacao HOM05D005756 ORTHO05D007991 2.4e-99 366.7 428 49.3
Gohir.A07G191400 Gossypium hirsutum HOM05D005756 ORTHO05D007991 3.2e-99 366.3 425 47.5
Ciclev10018016m.g Citrus clementina HOM05D005756 ORTHO05D007991 9.2e-99 364.8 437 49.9
BcaB06g26996 Brassica carinata HOM05D005756 ORTHO05D007991 1.2e-98 364.4 426 47.4
BolC4t25929H Brassica oleracea HOM05D005756 ORTHO05D007991 1.6e-98 364.0 427 47.5
A04p10010 Brassica napus HOM05D005756 ORTHO05D007991 2.1e-98 363.6 427 47.5
BraA04t16663Z Brassica rapa HOM05D005756 ORTHO05D007991 2.1e-98 363.6 427 47.5
BcaC02g09499 Brassica carinata HOM05D005756 ORTHO05D007991 2.7e-98 363.2 427 47.5
PSO541G4672 Papaver somniferum HOM05D005756 ORTHO05D007991 2.7e-98 363.2 417 49.2
C04p43490 Brassica napus HOM05D005756 ORTHO05D007991 7.8e-98 361.7 427 47.3
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 1.3e-97 360.9 378 52.1
Sp7g06350 Schrenkiella parvula HOM05D005756 ORTHO05D007991 3.9e-97 359.4 427 47.1
Hma1.2p1_0545F.1_g176030 Hydrangea macrophylla HOM05D005756 ORTHO05D007991 6.6e-97 358.6 379 53.0
Cc00_g15460 Coffea canephora HOM05D005756 ORTHO05D007991 1.1e-96 357.8 371 52.8
Gorai.001G221400 Gossypium raimondii HOM05D005756 ORTHO05D007991 1.1e-96 357.8 425 47.1
PGR042G1143 Punica granatum HOM05D005756 ORTHO05D007991 1.5e-96 357.5 406 49.8
unitig_0.g2684 Utricularia gibba HOM05D005756 ORTHO05D007991 5.6e-96 355.5 495 43.8
ClCG02G009290 Citrullus lanatus HOM05D005756 ORTHO05D007991 9.6e-96 354.8 434 48.2
Solyc07g045550.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 1.6e-95 354.0 373 52.0
MD17G1116000 Malus domestica HOM05D005756 ORTHO05D007991 2.1e-95 353.6 367 53.4
Sc21g0000630 Simmondsia chinensis HOM05D005756 ORTHO05D007991 2.8e-95 353.2 406 48.3
Duzib211G0508 Durio zibethinus HOM05D005756 ORTHO05D007991 4.8e-95 352.4 429 46.4
Ah.01g013810 Amaranthus hybridus HOM05D005756 ORTHO05D007991 8.1e-95 351.7 417 48.7
vmacro09483 Vaccinium macrocarpon HOM05D005756 ORTHO05D007991 2.4e-94 350.1 373 51.2
AUR62015018 Chenopodium quinoa HOM05D005756 ORTHO05D007991 3.1e-94 349.7 426 47.4
SGA_v2.0_scaffold12G05997 Striga asiatica HOM05D005756 ORTHO05D007991 3.1e-94 349.7 360 52.5
MELO3C025971.2 Cucumis melo HOM05D005756 ORTHO05D007991 4.0e-94 349.4 434 47.7
Prupe.3G198700 Prunus persica HOM05D005756 ORTHO05D007991 4.0e-94 349.4 434 47.7
Dinv26618 Davidia involucrata HOM05D005756 ORTHO05D007991 6.9e-94 348.6 427 47.3
CDE06G1141 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 2.6e-93 346.7 405 46.2
CiPaw.03G281000 Carya illinoinensis HOM05D005756 ORTHO05D007991 4.4e-93 345.9 435 47.1
CsaV3_6G009540 Cucumis sativus L. HOM05D005756 ORTHO05D007991 5.8e-93 345.5 434 47.0
Nitab4.5_0005267g0030 Nicotiana tabacum HOM05D005756 ORTHO05D007991 7.6e-93 345.1 377 49.9
Sed0018608 Sechium edule HOM05D005756 ORTHO05D007991 8.4e-92 341.7 433 46.7
CANSAT64G2821 Cannabis sativa HOM05D005756 ORTHO05D007991 2.1e-90 337.0 431 45.5
QL08p028191 Quercus lobata HOM05D005756 ORTHO05D007991 7.8e-90 335.1 448 45.5
HanXRQChr04g0126551 Helianthus annuus HOM05D005756 ORTHO05D007991 2.3e-89 333.6 369 46.9
unitig_748.g7200 Utricularia gibba HOM05D005756 ORTHO05D007991 8.7e-89 331.6 420 47.1
Aqoxy4G02252 Aquilegia oxysepala HOM05D005756 ORTHO05D007991 1.1e-88 331.3 428 43.2
EL10Ac9g22689 Beta vulgaris HOM05D005756 ORTHO05D007991 2.5e-88 330.1 392 48.7
SHI10154 Sapria himalayana HOM05D005756 ORTHO05D007991 7.3e-88 328.6 495 41.0
PGSC0003DMG400018834 Solanum tuberosum HOM05D005756 ORTHO05D007991 6.2e-87 325.5 369 49.6
Oeu032118.1 Olea europaea HOM05D005756 ORTHO05D007991 6.9e-86 322.0 425 45.9
Thhalv10005699m.g Eutrema salsugineum HOM05D005756 ORTHO05D007991 9.0e-86 321.6 367 46.6
Sed0020254 Sechium edule HOM05D005756 ORTHO05D007991 1.5e-85 320.9 409 45.0
Lj1C795T0 Lonicera japonica HOM05D005756 ORTHO05D007991 7.6e-85 318.5 370 48.6
Gohir.D07G197700 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.7e-84 317.4 368 47.0
Sopen05g025200 Solanum pennellii HOM05D005756 ORTHO05D000001 3.9e-81 306.2 420 45.2
CARHR216780 Cardamine hirsuta HOM05D005756 ORTHO05D007991 6.2e-79 298.9 336 46.7
Eucgr.A01028 Eucalyptus grandis HOM05D005756 ORTHO05D007991 2.4e-78 297.0 369 44.7
LjContig00081g0010185 Lotus japonicus HOM05D005756 ORTHO05D007991 9.0e-78 295.0 437 41.4
HPP92_028362 Vanilla planifolia HOM05D005756 ORTHO05D007991 9.0e-78 295.0 432 42.8
TPR.G1270 Trifolium pratense HOM05D005756 ORTHO05D007991 1.2e-77 294.7 442 41.9
Psat2g005040 Pisum sativum HOM05D005756 ORTHO05D007991 2.0e-77 293.9 442 42.5
Medtr5g097060 Medicago truncatula HOM05D005756 ORTHO05D007991 2.6e-77 293.5 436 41.7
HPP92_014030 Vanilla planifolia HOM05D005756 ORTHO05D007991 4.5e-77 292.7 432 42.6
ATR0624G001 Amborella trichopoda HOM05D005756 ORTHO05D007991 5.8e-77 292.4 407 42.5
Phvul.008G284100 Phaseolus vulgaris HOM05D005756 ORTHO05D007991 1.3e-73 281.2 434 41.7
arahy.Tifrunner.gnm1.ann1.5EZV1I Arachis hypogaea HOM05D005756 ORTHO05D007991 5.1e-73 279.3 413 42.6
Glyma.02G304600 Glycine max HOM05D005756 ORTHO05D007991 8.7e-73 278.5 435 40.5
Lalb_Chr10g0107581 Lupinus albus HOM05D005756 ORTHO05D007991 8.7e-73 278.5 432 40.7
arahy.Tifrunner.gnm1.ann1.P22I4F Arachis hypogaea HOM05D005756 ORTHO05D007991 1.9e-72 277.3 413 42.6
TWI18G0016 Tripterygium wilfordii HOM05D005756 ORTHO05D007991 2.1e-71 273.9 408 38.5
Cpa.g.sc211.22 Carica papaya HOM05D005756 ORTHO05D007991 8.2e-71 271.9 297 49.2
SEGI_03134 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.8e-70 270.8 444 37.6
VMungo0647G0888 Vigna mungo HOM05D005756 ORTHO05D007991 1.2e-69 268.1 448 40.8
SEGI_35519 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 2.6e-69 266.9 427 37.5
SEGI_14875 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.3e-68 264.6 460 35.9
Atru.chr6.3377 Acer truncatum HOM05D005756 ORTHO05D007991 3.5e-66 256.5 322 48.8
CANSAT64G2382 Cannabis sativa HOM05D005756 ORTHO05D007991 1.8e-65 254.2 302 47.0
Ca_06445_v3 Cicer arietinum L. HOM05D005756 ORTHO05D007991 2.2e-63 247.3 387 40.1
CDE04G3001 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 6.5e-60 235.7 442 35.3
Gohir.D11G156320 Gossypium hirsutum HOM05D005756 ORTHO05D007991 6.3e-55 219.2 416 35.6
AUR62029095 Chenopodium quinoa HOM05D005756 ORTHO05D007991 9.1e-54 215.3 259 49.0
Glyma.14G009200 Glycine max HOM05D005756 ORTHO05D007991 5.0e-52 209.5 347 39.2
SEGI_34368 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 8.8e-49 198.7 383 33.7
SMO364G0494 Selaginella moellendorffii HOM05D005756 ORTHO05D007991 4.7e-42 176.4 419 30.8
Dinv21286 Davidia involucrata HOM05D005756 ORTHO05D007991 1.3e-36 158.3 278 37.4
SGA_v2.0_scaffold12G05995 Striga asiatica HOM05D002374 ORTHO05D406151 4.7e-26 123.2 148 45.9
MBI19_g37437_MAGBIO Magnolia biondii HOM05D005756 ORTHO05D007991 1.9e-19 101.3 123 45.5
SEGI_18115 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 5.7e-16 89.7 100 46.0
Hma1.2p1_0545F.1_g176010 Hydrangea macrophylla HOM05D005756 ORTHO05D018916 1.6e-10 71.6 58 65.5
Cpa.g.sc211.21 Carica papaya HOM05D005756 ORTHO05D018916 2.8e-10 70.9 62 62.9
Lj1C795T1 Lonicera japonica HOM05D005756 ORTHO05D018916 4.7e-10 70.1 59 64.4
Oeu027645.1 Olea europaea HOM05D005756 ORTHO05D018916 8.0e-10 69.3 58 63.8
Dinv21288 Davidia involucrata HOM05D005756 ORTHO05D018916 8.9e-09 65.9 64 56.2
DCAR_019685 Daucus carota HOM05D005756 ORTHO05D018916 1.7e-07 61.6 59 52.5
Sc21g0000680 Simmondsia chinensis HOM05D005756 ORTHO05D018916 5.4e-06 56.6 40 67.5


User provided reference genes

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