Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold265G46098 Striga asiatica HOM05D003426 ORTHO05D003816 1.3e-191 672.9 341 100.0
MSTRG.26266 Avicennia marina HOM05D003426 ORTHO05D003816 5.6e-30 136.0 388 34.0
Cc06_g14810 Coffea canephora HOM05D003426 ORTHO05D003816 1.0e-28 131.7 319 34.5
Peaxi162Scf00401g00417 Petunia axillaris HOM05D003426 ORTHO05D003816 7.5e-27 125.6 353 32.6
MSTRG.6152 Avicennia marina HOM05D003426 ORTHO05D003816 2.2e-26 124.0 434 31.1
Oeu026460.1 Olea europaea HOM05D003426 ORTHO05D003816 2.2e-26 124.0 387 32.8
CAN.G160.49 Capsicum annuum HOM05D003426 ORTHO05D003816 4.1e-25 119.8 403 29.8
Hma1.2p1_0028F.1_g017630 Hydrangea macrophylla HOM05D003426 ORTHO05D003816 4.1e-25 119.8 329 34.0
PGSC0003DMG400011187 Solanum tuberosum HOM05D003426 ORTHO05D003816 4.1e-25 119.8 386 31.6
Cfa020810 Carpinus fangiana HOM05D003426 ORTHO05D003816 5.4e-25 119.4 348 31.6
Potri.006G182601 Populus trichocarpa HOM05D003426 ORTHO05D003816 5.4e-25 119.4 337 31.8
TWI34G0373 Tripterygium wilfordii HOM05D003426 ORTHO05D003816 3.9e-23 113.2 311 33.4
Aqoxy7G03377 Aquilegia oxysepala HOM05D003426 ORTHO05D003816 1.9e-22 110.9 361 32.1
HanXRQChr05g0144001 Helianthus annuus HOM05D003426 ORTHO05D003816 2.5e-22 110.5 275 35.3
Sopen07g001810 Solanum pennellii HOM05D003426 ORTHO05D003816 2.5e-22 110.5 384 30.7
Solyc07g005700.3 Solanum lycopersicum HOM05D003426 ORTHO05D003816 7.3e-22 109.0 384 31.0
AUR62028339 Chenopodium quinoa HOM05D003426 ORTHO05D003816 9.5e-22 108.6 371 32.6
MD15G1151400 Malus domestica HOM05D003426 ORTHO05D003816 9.5e-22 108.6 300 36.3
Actinidia23556 Actinidia chinensis HOM05D003426 ORTHO05D003816 1.6e-21 107.8 357 30.5
Glyma.17G072900 Glycine max HOM05D003426 ORTHO05D003816 2.8e-21 107.1 311 32.8
PSO210G2240 Papaver somniferum HOM05D003426 ORTHO05D003816 2.8e-21 107.1 274 32.5
Ca_21135_v3 Cicer arietinum L. HOM05D003426 ORTHO05D003816 8.1e-21 105.5 200 36.5
Ca_21137_v3 Cicer arietinum L. HOM05D003426 ORTHO05D003816 8.1e-21 105.5 200 36.5
Dinv42844 Davidia involucrata HOM05D003426 ORTHO05D003816 8.1e-21 105.5 267 31.8
Dinv43256 Davidia involucrata HOM05D003426 ORTHO05D003816 8.1e-21 105.5 267 31.8
AUR62025323 Chenopodium quinoa HOM05D003426 ORTHO05D003816 1.1e-20 105.1 395 31.6
Lsat_1_v5_gn_8_63641 Lactuca sativa HOM05D003426 ORTHO05D003816 1.4e-20 104.8 373 30.0
TAR626G1511 Trochodendron aralioides HOM05D003426 ORTHO05D003816 1.4e-20 104.8 343 30.9
EL10Ac8g18943 Beta vulgaris HOM05D003426 ORTHO05D003816 3.1e-20 103.6 362 30.9
Lj9C718T11 Lonicera japonica HOM05D003426 ORTHO05D003816 5.2e-20 102.8 361 29.4
Manes.14G144800 Manihot esculenta HOM05D003426 ORTHO05D003816 5.2e-20 102.8 362 29.0
Psat4g009920 Pisum sativum HOM05D003426 ORTHO05D003816 6.8e-20 102.4 227 33.9
vmacro16795 Vaccinium macrocarpon HOM05D003426 ORTHO05D003816 6.8e-20 102.4 332 29.2
Eucgr.C00251 Eucalyptus grandis HOM05D003426 ORTHO05D003816 1.5e-19 101.3 296 33.8
PSO210G1729 Papaver somniferum HOM05D003426 ORTHO05D003816 1.5e-19 101.3 269 32.0
Duzib168G0934 Durio zibethinus HOM05D003426 ORTHO05D003816 2.0e-19 100.9 312 32.4
Manes.06G035400 Manihot esculenta HOM05D003426 ORTHO05D003816 3.4e-19 100.1 345 29.9
Nitab4.5_0001571g0080 Nicotiana tabacum HOM05D003426 ORTHO05D003816 1.3e-18 98.2 222 33.8
TAR636G1172 Trochodendron aralioides HOM05D003426 ORTHO05D003816 2.2e-18 97.4 211 36.5
Lj4g0006994 Lotus japonicus HOM05D003426 ORTHO05D003816 4.9e-18 96.3 279 29.4
Atru.chr7.23 Acer truncatum HOM05D003426 ORTHO05D003816 6.4e-18 95.9 324 29.6
Thecc.09G028500 Theobroma cacao HOM05D003426 ORTHO05D003816 6.4e-18 95.9 333 30.0
COL.COLO4_18823 Corchorus olitorius HOM05D003426 ORTHO05D003816 8.3e-18 95.5 297 30.6
Oeu021305.2 Olea europaea HOM05D003426 ORTHO05D003816 8.3e-18 95.5 247 32.0
Haze_19169 Corylus avellana HOM05D003426 ORTHO05D003816 1.9e-17 94.4 420 28.6
Glyma.02G205001 Glycine max HOM05D003426 ORTHO05D003816 1.9e-17 94.4 320 29.1
Lj4g0000658 Lotus japonicus HOM05D003426 ORTHO05D003816 1.9e-17 94.4 338 29.9
Cpa.g.sc46.169 Carica papaya HOM05D003426 ORTHO05D003816 4.1e-17 93.2 248 33.1
MD17G1259500 Malus domestica HOM05D003426 ORTHO05D003816 5.4e-17 92.8 385 26.5
Migut.J01365 Erythranthe guttata HOM05D003426 ORTHO05D003816 7.1e-17 92.4 248 32.3
MELO3C010212.2 Cucumis melo HOM05D003426 ORTHO05D003816 1.6e-16 91.3 268 31.7
Medtr4g130690 Medicago truncatula HOM05D003426 ORTHO05D003816 2.1e-16 90.9 160 38.1
CiPaw.15G166800 Carya illinoinensis HOM05D003426 ORTHO05D003816 2.7e-16 90.5 199 37.2
ECA236G2514 Erigeron canadensis HOM05D003426 ORTHO05D003816 2.7e-16 90.5 391 28.1
Rhsim01G0028100 Rhododendron simsii HOM05D003426 ORTHO05D003816 2.7e-16 90.5 277 29.6
Glyma.17G184200 Glycine max HOM05D003426 ORTHO05D003816 4.6e-16 89.7 185 33.0
Sc14g0000930 Simmondsia chinensis HOM05D003426 ORTHO05D003816 4.6e-16 89.7 335 27.5
Nitab4.5_0005869g0080 Nicotiana tabacum HOM05D003426 ORTHO05D003816 6.0e-16 89.4 213 32.4
Prupe.7G264500 Prunus persica HOM05D003426 ORTHO05D003816 6.0e-16 89.4 301 29.9
Hma1.2p1_2680F.1_g326790 Hydrangea macrophylla HOM05D003426 ORTHO05D003816 7.8e-16 89.0 207 32.4
THA.LOC104803917 Tarenaya hassleriana HOM05D003426 ORTHO05D003816 1.0e-15 88.6 319 29.2
SalBow1G0569 Salvia bowleyana HOM05D003426 ORTHO05D003816 1.3e-15 88.2 372 29.0
arahy.Tifrunner.gnm1.ann1.H6N2T4 Arachis hypogaea HOM05D003426 ORTHO05D003816 2.3e-15 87.4 341 26.4
Lj7P460T26 Lonicera japonica HOM05D003426 ORTHO05D003816 2.3e-15 87.4 182 34.6
CSS0024837 Camellia sinensis var. sinensis HOM05D003426 ORTHO05D003816 3.9e-15 86.7 246 29.3
Glyma.17G073000 Glycine max HOM05D003426 ORTHO05D003816 3.9e-15 86.7 331 28.4
Actinidia38667 Actinidia chinensis HOM05D003426 ORTHO05D003816 6.6e-15 85.9 228 35.5
arahy.Tifrunner.gnm1.ann1.N5DK6E Arachis hypogaea HOM05D003426 ORTHO05D003816 1.1e-14 85.1 333 27.6
MD02G1006400 Malus domestica HOM05D003426 ORTHO05D003816 1.5e-14 84.7 287 30.7
CANSAT11G1136 Cannabis sativa HOM05D003426 ORTHO05D003816 1.9e-14 84.3 243 29.2
ClCG06G012490 Citrullus lanatus HOM05D003426 ORTHO05D003816 1.9e-14 84.3 258 31.0
Medtr3g045840 Medicago truncatula HOM05D003426 ORTHO05D003816 3.3e-14 83.6 255 30.6
Medtr4g129690 Medicago truncatula HOM05D003426 ORTHO05D003816 4.3e-14 83.2 201 33.8
DCAR_019401 Daucus carota HOM05D003426 ORTHO05D003816 5.6e-14 82.8 160 35.0
TAR625G0621 Trochodendron aralioides HOM05D003426 ORTHO05D003816 5.6e-14 82.8 326 28.5
Glyma.17G072650 Glycine max HOM05D003426 ORTHO05D003816 7.3e-14 82.4 192 34.9
Gohir.A07G027500 Gossypium hirsutum HOM05D003426 ORTHO05D003816 9.5e-14 82.0 288 29.9
MBI15_g18232_MAGBIO Magnolia biondii HOM05D003426 ORTHO05D003816 9.5e-14 82.0 349 28.4
Gorai.001G032900 Gossypium raimondii HOM05D003426 ORTHO05D003816 1.2e-13 81.6 292 32.2
Psat4g010040 Pisum sativum HOM05D003426 ORTHO05D003816 1.6e-13 81.3 102 43.1
Sed0007563 Sechium edule HOM05D003426 ORTHO05D003816 2.8e-13 80.5 268 30.6
CiPaw.16G108300 Carya illinoinensis HOM05D003426 ORTHO05D003816 3.6e-13 80.1 229 28.8
Gohir.D07G031500 Gossypium hirsutum HOM05D003426 ORTHO05D003816 4.7e-13 79.7 292 31.8
Actinidia10526 Actinidia chinensis HOM05D003426 ORTHO05D003816 6.2e-13 79.3 327 28.4
Nn2g12424 Nelumbo nucifera HOM05D003426 ORTHO05D003816 6.2e-13 79.3 232 30.2
Hund08921 Selenicereus undatus HOM05D003426 ORTHO05D003816 6.2e-13 79.3 224 30.4
Psat4g009680 Pisum sativum HOM05D003426 ORTHO05D003816 8.1e-13 79.0 144 36.8
PGR142G3879 Punica granatum HOM05D003426 ORTHO05D003816 8.1e-13 79.0 302 27.5
Phvul.003G155200 Phaseolus vulgaris HOM05D003426 ORTHO05D003816 1.4e-12 78.2 245 31.8
Sed0021282 Sechium edule HOM05D003426 ORTHO05D003816 1.8e-12 77.8 216 29.6
PGSC0003DMG400036381 Solanum tuberosum HOM05D003426 ORTHO05D003816 1.8e-12 77.8 268 29.1
AUR62024799 Chenopodium quinoa HOM05D016866 ORTHO05D003816 2.3e-12 77.4 158 32.9
PGSC0003DMG400037110 Solanum tuberosum HOM05D003426 ORTHO05D003816 2.3e-12 77.4 172 30.2
Ah.09g228830 Amaranthus hybridus HOM05D006517 ORTHO05D007886 3.1e-12 77.0 383 26.4
EL10Ac2g02492 Beta vulgaris HOM05D016866 ORTHO05D003816 3.1e-12 77.0 216 32.4
Psat6g228520 Pisum sativum HOM05D003426 ORTHO05D003816 5.2e-12 76.3 132 35.6
Sabra06G0139100 Salix brachista HOM05D003426 ORTHO05D003816 5.2e-12 76.3 246 28.5
QL02p018764 Quercus lobata HOM05D003426 ORTHO05D003816 8.9e-12 75.5 235 29.4
Dinv17422 Davidia involucrata HOM05D003426 ORTHO05D003816 1.2e-11 75.1 157 34.4
PGSC0003DMG400040189 Solanum tuberosum HOM05D003426 ORTHO05D003816 2.0e-11 74.3 178 32.0
Lalb_Chr12g0198761 Lupinus albus HOM05D003426 ORTHO05D003816 3.4e-11 73.6 86 46.5
Glyma.17G072800 Glycine max HOM05D003426 ORTHO05D003816 7.6e-11 72.4 192 32.8
PGSC0003DMG400040160 Solanum tuberosum HOM05D003426 ORTHO05D003816 1.7e-10 71.2 178 29.2
Rhsim03G0257700 Rhododendron simsii HOM05D003426 ORTHO05D003816 4.9e-10 69.7 182 33.5
Ah.10g025600 Amaranthus hybridus HOM05D016866 ORTHO05D003816 6.4e-10 69.3 185 32.4
FAN28G0527 Fragaria x ananassa HOM05D003426 ORTHO05D003816 6.4e-10 69.3 194 34.5
Lsat_1_v5_gn_5_90301 Lactuca sativa HOM05D003426 ORTHO05D003816 6.4e-10 69.3 284 29.9
Nitab4.5_0000123g0610 Nicotiana tabacum HOM05D003426 ORTHO05D007302 6.4e-10 69.3 186 29.6
VMungo1215G0444 Vigna mungo HOM05D003426 ORTHO05D003816 6.4e-10 69.3 146 32.9
MBI14_g30955_MAGBIO Magnolia biondii HOM05D003426 ORTHO05D003816 1.1e-09 68.6 371 25.9
Lsat_1_v5_gn_5_89740 Lactuca sativa HOM05D003426 ORTHO05D003816 1.9e-09 67.8 163 35.6
Sopen10g019310 Solanum pennellii HOM05D003426 ORTHO05D003816 2.4e-09 67.4 176 31.2
Actinidia02402 Actinidia chinensis HOM05D000650 ORTHO05D007302 3.2e-09 67.0 129 31.0
Lalb_Chr13g0300811 Lupinus albus HOM05D003426 ORTHO05D003816 3.2e-09 67.0 73 50.7
QL02p093542 Quercus lobata HOM05D001418 ORTHO05D002038 4.1e-09 66.6 138 34.1
Nitab4.5_0011705g0030 Nicotiana tabacum HOM05D003426 ORTHO05D003816 7.1e-09 65.9 85 45.9
Solyc10g048140.2 Solanum lycopersicum HOM05D003426 ORTHO05D003816 7.1e-09 65.9 176 30.7
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 7.1e-09 65.9 276 25.4
Nn8g39953 Nelumbo nucifera HOM05D003426 ORTHO05D003816 9.2e-09 65.5 96 43.8
Phvul.010G050200 Phaseolus vulgaris HOM05D003426 ORTHO05D003816 9.2e-09 65.5 170 34.1
Glyma.17G193101 Glycine max HOM05D003426 ORTHO05D003816 1.2e-08 65.1 163 35.0
TPR.G24886 Trifolium pratense HOM05D003426 ORTHO05D003816 1.2e-08 65.1 82 43.9
Dinv08190 Davidia involucrata HOM05D003426 ORTHO05D003816 1.6e-08 64.7 309 28.2
Hund02984 Selenicereus undatus HOM05D016866 ORTHO05D015160 1.6e-08 64.7 250 25.6
Haze_10696 Corylus avellana HOM05D000650 ORTHO05D007302 2.1e-08 64.3 172 29.1
HanXRQChr10g0313661 Helianthus annuus HOM05D003426 ORTHO05D003816 2.1e-08 64.3 169 27.2
AUR62032422 Chenopodium quinoa HOM05D016866 ORTHO05D003816 2.7e-08 63.9 268 25.4
Rhsim02G0212600 Rhododendron simsii HOM05D003426 ORTHO05D003816 2.7e-08 63.9 166 31.9
ECA246G3789 Erigeron canadensis HOM05D005220 ORTHO05D006082 4.6e-08 63.2 122 33.6
Rhsim11G0141100 Rhododendron simsii HOM05D000650 ORTHO05D007302 4.6e-08 63.2 152 29.6
PGSC0003DMG400038550 Solanum tuberosum HOM05D003426 ORTHO05D003816 4.6e-08 63.2 87 41.4
CSS0012807 Camellia sinensis var. sinensis HOM05D003426 ORTHO05D003816 6.0e-08 62.8 59 57.6
Zm00001eb388770 Zea mays HOM05D003426 ORTHO05D003816 6.0e-08 62.8 206 33.0
Os06g0651300 Oryza sativa ssp. japonica HOM05D003426 ORTHO05D003816 1.0e-07 62.0 176 33.0
vmacro06066 Vaccinium macrocarpon HOM05D003426 ORTHO05D003816 1.3e-07 61.6 183 32.8
VMungo0251G0586 Vigna mungo HOM05D000650 ORTHO05D007302 1.7e-07 61.2 151 28.5
Zm00001eb313060 Zea mays HOM05D031047 ORTHO05D015160 1.7e-07 61.2 106 33.0
Zm00001eb313090 Zea mays HOM05D031047 ORTHO05D015160 1.7e-07 61.2 106 33.0
Actinidia38316 Actinidia chinensis HOM05D003426 ORTHO05D003816 2.3e-07 60.8 326 27.0
QL11p025817 Quercus lobata HOM05D000650 ORTHO05D007302 2.3e-07 60.8 141 28.4
TAR625G0266 Trochodendron aralioides HOM05D000650 ORTHO05D003816 2.3e-07 60.8 133 32.3
Lsat_1_v5_gn_5_90221 Lactuca sativa HOM05D029854 ORTHO05D003816 3.0e-07 60.5 182 33.5
TAR625G0371 Trochodendron aralioides HOM05D000650 ORTHO05D000735 3.0e-07 60.5 97 36.1
Cpa.g.sc20.26 Carica papaya HOM05D000650 ORTHO05D000735 3.9e-07 60.1 225 27.1
Potri.001G283000 Populus trichocarpa HOM05D000650 ORTHO05D007302 3.9e-07 60.1 138 31.2
Sc18g0002970 Simmondsia chinensis HOM05D003426 ORTHO05D003816 3.9e-07 60.1 166 26.5
SGA_v2.0_scaffold96G29076 Striga asiatica HOM05D003426 ORTHO05D003816 5.1e-07 59.7 257 29.6
SGA_v2.0_scaffold12G06013 Striga asiatica HOM05D003426 ORTHO05D003816 8.6e-07 58.9 69 44.9
SGA_v2.0_scaffold1435G53950 Striga asiatica HOM05D003426 ORTHO05D003816 1.1e-06 58.5 256 28.9
PSO561G0041 Papaver somniferum HOM05D003426 ORTHO05D003816 1.5e-06 58.2 279 29.0
PSO675G7028 Papaver somniferum HOM05D003426 ORTHO05D003816 1.5e-06 58.2 197 32.5
FvH4_1g00800 Fragaria vesca HOM05D003426 ORTHO05D003816 1.9e-06 57.8 130 36.2
FAN26G0769 Fragaria x ananassa HOM05D003426 ORTHO05D003816 1.9e-06 57.8 299 26.8
CDE02G2039 Ceratophyllum demersum HOM05D051348 ORTHO05D003816 2.5e-06 57.4 124 33.9
Nn1g05634 Nelumbo nucifera HOM05D000650 ORTHO05D000735 2.5e-06 57.4 176 30.1
Phvul.002G214600 Phaseolus vulgaris HOM05D000650 ORTHO05D007302 3.3e-06 57.0 155 27.1
Sopen10g015150 Solanum pennellii HOM05D003426 ORTHO05D003816 3.3e-06 57.0 90 38.9
COL.COLO4_32413 Corchorus olitorius HOM05D000027 ORTHO05D001579 4.3e-06 56.6 116 28.4
Haze_10697 Corylus avellana HOM05D000650 ORTHO05D007302 4.3e-06 56.6 117 29.9
SGA_v2.0_scaffold83G26387 Striga asiatica HOM05D000650 ORTHO05D000735 4.3e-06 56.6 135 26.7
AL3G48950 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 5.6e-06 56.2 103 33.0
Glyma.08G066700 Glycine max HOM05D000650 ORTHO05D007302 5.6e-06 56.2 133 29.3
Lj4g0020146 Lotus japonicus HOM05D000650 ORTHO05D007302 5.6e-06 56.2 137 26.3
CARHR184730 Cardamine hirsuta HOM05D012895 ORTHO05D014428 7.3e-06 55.8 291 27.5
ATR0580G137 Amborella trichopoda HOM05D003426 ORTHO05D003816 9.6e-06 55.5 174 29.3
QL09p018396 Quercus lobata HOM05D000650 ORTHO05D010020 9.6e-06 55.5 117 33.3
PGSC0003DMG400043134 Solanum tuberosum HOM05D003426 ORTHO05D003816 9.6e-06 55.5 76 40.8
TPR.G20268 Trifolium pratense HOM05D000650 ORTHO05D007302 9.6e-06 55.5 116 31.0


User provided reference genes

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