Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 2.3e-79 298.9 160 100.0
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 1.2e-48 196.8 117 83.8
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 3.6e-48 195.3 117 82.9
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 3.6e-48 195.3 117 82.1
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 4.7e-48 194.9 117 83.8
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 8.1e-48 194.1 120 78.3
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 1.4e-47 193.4 117 82.1
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 1.4e-47 193.4 116 84.5
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 1.8e-47 193.0 117 81.2
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 2.4e-47 192.6 117 79.5
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 2.4e-47 192.6 117 80.3
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 3.1e-47 192.2 117 81.2
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 3.1e-47 192.2 117 80.3
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 4.0e-47 191.8 118 82.2
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 5.2e-47 191.4 118 78.8
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 6.8e-47 191.0 117 79.5
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 6.8e-47 191.0 117 79.5
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 6.8e-47 191.0 117 78.6
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 1.2e-46 190.3 117 80.3
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 1.2e-46 190.3 117 79.5
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 1.2e-46 190.3 117 78.6
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 1.2e-46 190.3 117 77.8
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 1.2e-46 190.3 117 79.5
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.2e-46 190.3 117 80.3
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 1.2e-46 190.3 117 77.8
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 1.5e-46 189.9 117 80.3
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.5e-46 189.9 117 80.3
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 2.0e-46 189.5 117 78.6
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 2.6e-46 189.1 117 78.6
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 3.4e-46 188.7 117 79.5
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 3.4e-46 188.7 117 76.9
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 3.4e-46 188.7 116 82.8
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 3.4e-46 188.7 117 78.6
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 5.8e-46 188.0 117 79.5
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 7.6e-46 187.6 117 78.6
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 9.9e-46 187.2 117 78.6
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 9.9e-46 187.2 117 77.8
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 9.9e-46 187.2 118 78.0
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 1.3e-45 186.8 116 76.7
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 2.2e-45 186.0 117 77.8
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.2e-45 186.0 117 77.8
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 2.9e-45 185.7 117 76.1
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 2.9e-45 185.7 116 78.4
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 8.4e-45 184.1 117 75.2
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 1.1e-44 183.7 117 74.4
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 1.1e-44 183.7 117 74.4
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 1.1e-44 183.7 117 74.4
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.1e-44 183.7 116 76.7
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 1.1e-44 183.7 117 77.8
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 1.4e-44 183.3 117 74.4
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 1.4e-44 183.3 117 74.4
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.9e-44 183.0 115 77.4
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 1.9e-44 183.0 117 74.4
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.9e-44 183.0 117 76.9
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 2.4e-44 182.6 117 76.1
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 2.4e-44 182.6 124 73.4
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 3.2e-44 182.2 118 73.7
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.2e-44 182.2 117 76.1
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 4.2e-44 181.8 116 75.9
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 4.2e-44 181.8 118 72.9
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 4.2e-44 181.8 117 75.2
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 5.4e-44 181.4 117 74.4
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 5.4e-44 181.4 117 76.9
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 7.1e-44 181.0 116 74.1
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 7.1e-44 181.0 114 76.3
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 7.1e-44 181.0 115 76.5
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 9.2e-44 180.6 109 83.5
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 9.2e-44 180.6 116 73.3
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 9.2e-44 180.6 117 72.6
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 1.2e-43 180.3 117 77.8
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.6e-43 179.9 143 66.4
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 1.6e-43 179.9 117 75.2
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 1.6e-43 179.9 117 75.2
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 2.1e-43 179.5 117 74.4
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.1e-43 179.5 117 76.1
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 3.5e-43 178.7 117 74.4
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 4.6e-43 178.3 117 72.6
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 7.8e-43 177.6 110 78.2
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 1.0e-42 177.2 117 72.6
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 1.7e-42 176.4 118 75.4
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 2.3e-42 176.0 117 70.9
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 2.3e-42 176.0 117 75.2
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 3.0e-42 175.6 117 74.4
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 6.6e-42 174.5 117 74.4
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 6.6e-42 174.5 117 69.2
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 6.6e-42 174.5 117 69.2
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 1.5e-41 173.3 118 72.9
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 1.5e-41 173.3 118 69.5
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.3e-41 172.2 117 73.5
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 4.3e-41 171.8 117 72.6
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 4.3e-41 171.8 117 71.8
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 5.6e-41 171.4 117 68.4
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 5.6e-41 171.4 108 79.6
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 7.3e-41 171.0 117 70.9
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 1.6e-40 169.9 117 69.2
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.1e-39 167.2 117 69.2
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 1.1e-39 167.2 104 77.9
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 3.1e-39 165.6 117 70.9
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 4.0e-39 165.2 117 70.9
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 5.8e-38 161.4 101 77.2
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 7.6e-38 161.0 119 67.2
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 1.7e-37 159.8 117 66.7
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 4.9e-37 158.3 110 71.8
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 6.4e-37 157.9 120 65.0
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 8.4e-37 157.5 115 69.6
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 2.4e-36 156.0 102 77.5
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 3.2e-36 155.6 116 66.4
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 4.2e-36 155.2 90 84.4
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 4.2e-36 155.2 116 70.7
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 7.1e-36 154.5 99 77.8
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 2.1e-35 152.9 117 69.2
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 3.5e-35 152.1 99 74.7
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 5.1e-34 148.3 113 65.5
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 1.1e-33 147.1 98 71.4
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 4.3e-33 145.2 117 63.2
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 5.6e-33 144.8 127 59.1
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 9.6e-33 144.1 116 63.8
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 1.3e-32 143.7 95 74.7
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 1.6e-32 143.3 106 67.0
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 1.6e-32 143.3 106 67.0
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 3.1e-31 139.0 118 61.9
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 3.1e-31 139.0 117 60.7
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 5.3e-31 138.3 107 63.6
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 9.0e-31 137.5 118 60.2
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 3.4e-30 135.6 86 79.1
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 1.7e-29 133.3 117 60.7
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 2.9e-29 132.5 107 63.6
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 1.1e-28 130.6 100 65.0
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 1.6e-27 126.7 96 65.6
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 1.0e-26 124.0 112 53.6
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 1.0e-26 124.0 114 58.8
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 2.3e-26 122.9 77 74.0
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 8.7e-26 120.9 78 74.4
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 1.9e-25 119.8 117 54.7
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 3.3e-25 119.0 115 50.4
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 3.3e-25 119.0 108 55.6
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 1.3e-24 117.1 77 67.5
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.6e-24 116.7 102 58.8
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 1.6e-24 116.7 113 49.6
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 2.1e-24 116.3 113 54.0
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 2.8e-24 115.9 116 55.2
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 2.8e-24 115.9 115 48.7
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 1.8e-23 113.2 88 59.1
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 3.1e-23 112.5 84 67.9
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 5.3e-23 111.7 113 52.2
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 6.9e-23 111.3 117 45.3
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 5.8e-22 108.2 88 63.6
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 7.6e-22 107.8 100 54.0
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 2.2e-21 106.3 115 47.8
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 5.5e-20 101.7 124 44.4
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 1.0e-18 97.4 76 69.7
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 1.8e-18 96.7 127 43.3
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 2.5e-17 92.8 61 72.1
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 1.2e-14 84.0 53 69.8
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 1.4e-07 60.5 75 45.3
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 1.8e-07 60.1 53 49.1
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 1.2e-06 57.4 117 35.0
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 3.4e-06 55.8 111 35.1
Sed0024624 Sechium edule HOM05D004009 ORTHO05D004617 3.4e-06 55.8 111 32.4
Psat6g233080 Pisum sativum HOM05D004009 ORTHO05D004617 4.5e-06 55.5 111 35.1
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 4.5e-06 55.5 111 33.3
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 7.7e-06 54.7 35 68.6
Glyma.14G006000 Glycine max HOM05D004009 ORTHO05D004617 1.0e-05 54.3 111 34.2
TPR.G6029 Trifolium pratense HOM05D004009 ORTHO05D004617 1.0e-05 54.3 111 34.2


User provided reference genes

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