Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold261G45922 Striga asiatica HOM05D007208 ORTHO05D009090 3.4e-134 483.0 632 100.0
CARHR002920 Cardamine hirsuta HOM05D007208 ORTHO05D009090 3.8e-56 223.8 617 75.4
Thhalv10007014m.g Eutrema salsugineum HOM05D007208 ORTHO05D009090 2.1e-54 218.0 603 74.8
BraA10t42479Z Brassica rapa HOM05D007208 ORTHO05D009090 3.5e-54 217.2 604 71.5
Peaxi162Scf01258g00013 Petunia axillaris HOM05D007208 ORTHO05D009090 3.5e-54 217.2 604 72.4
A10p02100 Brassica napus HOM05D007208 ORTHO05D009090 1.3e-53 215.3 599 72.0
CAN.G168.33 Capsicum annuum HOM05D007208 ORTHO05D009090 1.3e-53 215.3 603 79.8
Sp1g02490 Schrenkiella parvula HOM05D007208 ORTHO05D009090 1.7e-53 214.9 603 76.6
AT1G03560 Arabidopsis thaliana HOM05D007208 ORTHO05D009090 2.3e-53 214.5 603 75.5
BcaC05g24521 Brassica carinata HOM05D007208 ORTHO05D009090 3.0e-53 214.2 600 71.5
BolC5t28979H Brassica oleracea HOM05D007208 ORTHO05D009090 3.0e-53 214.2 600 71.5
C05p02010 Brassica napus HOM05D007208 ORTHO05D009090 3.9e-53 213.8 600 71.5
BcaB02g06917 Brassica carinata HOM05D007208 ORTHO05D009090 8.7e-53 212.6 632 68.0
AL1G13070 Arabidopsis lyrata HOM05D007208 ORTHO05D009090 1.1e-52 212.2 603 74.8
SalBow1G0905 Salvia bowleyana HOM05D007208 ORTHO05D009090 3.6e-51 207.2 202 55.0
FAN05G4557 Fragaria x ananassa HOM05D007208 ORTHO05D009090 1.2e-49 202.2 610 78.4
Cc05_g06710 Coffea canephora HOM05D007208 ORTHO05D009090 2.0e-49 201.4 168 57.1
Aa31LG1G20920 Aethionema arabicum HOM05D000389 ORTHO05D009090 3.4e-49 200.7 613 68.7
CSS0042005 Camellia sinensis var. sinensis HOM05D007208 ORTHO05D009090 7.1e-47 193.0 615 67.8
Psat4g156960 Pisum sativum HOM05D007208 ORTHO05D009090 1.2e-46 192.2 617 77.8
RcHm_v2.0_Chr4g0446301 Rosa chinensis HOM05D007208 ORTHO05D009090 5.1e-45 186.8 178 50.6
Potri.019G103400 Populus trichocarpa HOM05D007208 ORTHO05D009090 2.5e-44 184.5 172 52.9
Sc21g0002370 Simmondsia chinensis HOM05D007208 ORTHO05D009090 3.3e-44 184.1 201 49.3
FAN02G1502 Fragaria x ananassa HOM05D007208 ORTHO05D009090 5.6e-44 183.3 175 47.4
THA.LOC104826027 Tarenaya hassleriana HOM05D007208 ORTHO05D009090 5.6e-44 183.3 170 50.6
Atru.chr6.3038 Acer truncatum HOM05D007208 ORTHO05D009090 7.4e-44 183.0 219 42.0
Ah.01g002470 Amaranthus hybridus HOM05D007208 ORTHO05D009090 1.3e-43 182.2 203 49.3
Aqoxy1G02638 Aquilegia oxysepala HOM05D007208 ORTHO05D009090 1.3e-43 182.2 600 74.8
arahy.Tifrunner.gnm1.ann1.B872W9 Arachis hypogaea HOM05D007208 ORTHO05D009090 1.3e-43 182.2 632 65.5
FvH4_6g45000 Fragaria vesca HOM05D007208 ORTHO05D009090 2.8e-43 181.0 179 47.5
Ca_27341_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 4.8e-43 180.3 643 74.2
Ca_30865_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 4.8e-43 180.3 643 74.2
arahy.Tifrunner.gnm1.ann1.LJ4E0Z Arachis hypogaea HOM05D007208 ORTHO05D009090 8.1e-43 179.5 632 67.6
CsaV3_7G004270 Cucumis sativus L. HOM05D007208 ORTHO05D009090 1.8e-42 178.3 167 49.7
Medtr8g054410 Medicago truncatula HOM05D007208 ORTHO05D009090 1.2e-41 175.6 634 71.0
EL10Ac9g22658 Beta vulgaris HOM05D007208 ORTHO05D009090 1.5e-41 175.3 186 48.9
MD17G1080900 Malus domestica HOM05D007208 ORTHO05D009090 1.5e-41 175.3 167 51.5
Nitab4.5_0000635g0090 Nicotiana tabacum HOM05D007208 ORTHO05D009090 2.0e-41 174.9 560 80.5
CANSAT35G0587 Cannabis sativa HOM05D007208 ORTHO05D009090 3.4e-41 174.1 170 47.6
Rhsim06G0149200 Rhododendron simsii HOM05D007208 ORTHO05D009090 4.9e-40 170.2 207 46.4
Phvul.011G168600 Phaseolus vulgaris HOM05D007208 ORTHO05D009090 6.4e-40 169.9 118 80.5
TAR629G2939 Trochodendron aralioides HOM05D007208 ORTHO05D009090 6.4e-40 169.9 203 41.9
VMungo1127G1221 Vigna mungo HOM05D007208 ORTHO05D009090 6.4e-40 169.9 118 80.5
Carub.0001s0270 Capsella rubella HOM05D007208 ORTHO05D009090 5.5e-39 166.8 116 82.8
GSVIVG01030557001 Vitis vinifera HOM05D007208 ORTHO05D009090 7.1e-39 166.4 191 49.2
Lj3g0013344 Lotus japonicus HOM05D007208 ORTHO05D009090 1.6e-38 165.2 604 78.3
TPR.G16118 Trifolium pratense HOM05D007208 ORTHO05D009090 2.1e-38 164.9 637 68.6
MBI18_g13208_MAGBIO Magnolia biondii HOM05D007208 ORTHO05D009090 3.5e-38 164.1 215 43.3
Nn1g06681 Nelumbo nucifera HOM05D007208 ORTHO05D009090 3.5e-38 164.1 171 42.7
MELO3C018751.2 Cucumis melo HOM05D007208 ORTHO05D009090 1.3e-37 162.2 117 65.8
Nitab4.5_0000998g0040 Nicotiana tabacum HOM05D007208 ORTHO05D009090 1.3e-37 162.2 560 80.4
FAN09G1518 Fragaria x ananassa HOM05D007208 ORTHO05D009090 1.8e-37 161.8 179 44.1
ClCG02G001180 Citrullus lanatus HOM05D007208 ORTHO05D009090 2.3e-37 161.4 158 50.0
Thecc.02G175200 Theobroma cacao HOM05D007208 ORTHO05D009090 2.3e-37 161.4 200 45.5
Lalb_Chr03g0031321 Lupinus albus HOM05D007208 ORTHO05D009090 8.7e-37 159.5 617 77.5
RcHm_v2.0_Chr2g0162271 Rosa chinensis HOM05D007208 ORTHO05D009090 1.1e-36 159.1 115 81.7
Solyc10g008510.3 Solanum lycopersicum HOM05D007208 ORTHO05D009090 1.5e-36 158.7 110 82.7
Sopen10g004330 Solanum pennellii HOM05D007208 ORTHO05D009090 7.4e-36 156.4 109 81.7
Gohir.D02G181800 Gossypium hirsutum HOM05D007208 ORTHO05D009090 1.3e-35 155.6 168 48.2
PGSC0003DMG400021677 Solanum tuberosum HOM05D007208 ORTHO05D009090 1.3e-35 155.6 110 80.9
Migut.H01048 Erythranthe guttata HOM05D007208 ORTHO05D009090 1.6e-35 155.2 106 88.7
Sed0017509 Sechium edule HOM05D007208 ORTHO05D009090 1.6e-35 155.2 164 45.7
Lsat_1_v5_gn_8_132240 Lactuca sativa HOM05D007208 ORTHO05D009090 2.1e-35 154.8 180 49.4
Thecc.05G160800 Theobroma cacao HOM05D007208 ORTHO05D009090 1.8e-34 151.8 160 49.4
Oeu041287.1 Olea europaea HOM05D007208 ORTHO05D009090 2.4e-34 151.4 221 42.5
Ciclev10014552m.g Citrus clementina HOM05D007208 ORTHO05D009090 6.9e-34 149.8 195 43.1
Actinidia09879 Actinidia chinensis HOM05D000006 ORTHO05D000001 2.6e-33 147.9 166 47.6
ATR0626G143 Amborella trichopoda HOM05D007208 ORTHO05D009090 1.0e-32 146.0 184 38.0
arahy.Tifrunner.gnm1.ann1.VA1KA7 Arachis hypogaea HOM05D007208 ORTHO05D009090 1.7e-32 145.2 118 61.0
COL.COLO4_35409 Corchorus olitorius HOM05D007208 ORTHO05D009090 1.7e-32 145.2 179 46.4
PGR042G3663 Punica granatum HOM05D007208 ORTHO05D009090 1.7e-32 145.2 193 42.0
Hma1.2p1_0875F.1_g231470 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 4.9e-32 143.7 103 81.6
Prupe.3G234000 Prunus persica HOM05D007208 ORTHO05D009090 4.9e-32 143.7 166 44.0
ECA233G0015 Erigeron canadensis HOM05D007208 ORTHO05D009090 6.5e-32 143.3 147 50.3
HanXRQChr15g0492931 Helianthus annuus HOM05D007208 ORTHO05D009090 8.4e-32 142.9 174 47.1
arahy.Tifrunner.gnm1.ann1.KEA2PN Arachis hypogaea HOM05D007208 ORTHO05D009090 7.1e-31 139.8 195 42.6
Cpa.g.sc34.123 Carica papaya HOM05D007208 ORTHO05D009090 3.5e-30 137.5 142 48.6
Sabra19G0114200 Salix brachista HOM05D007208 ORTHO05D009090 3.5e-30 137.5 171 45.0
Manes.12G086900 Manihot esculenta HOM05D007208 ORTHO05D009090 6.0e-30 136.7 98 79.6
SHI10482 Sapria himalayana HOM05D007208 ORTHO05D009090 1.3e-29 135.6 149 48.3
Lj8P115T34 Lonicera japonica HOM05D007208 ORTHO05D009090 3.9e-29 134.0 134 50.0
Haze_13114 Corylus avellana HOM05D007208 ORTHO05D009090 6.7e-29 133.3 152 46.1
QL10p048755 Quercus lobata HOM05D007208 ORTHO05D009090 1.1e-28 132.5 137 44.5
CiPaw.03G172500 Carya illinoinensis HOM05D007208 ORTHO05D009090 5.7e-28 130.2 149 43.0
TWI75G0324 Tripterygium wilfordii HOM05D007208 ORTHO05D009090 5.7e-28 130.2 138 44.9
Hund14539 Selenicereus undatus HOM05D007208 ORTHO05D009090 2.2e-27 128.3 171 40.9
Dinv03836 Davidia involucrata HOM05D007208 ORTHO05D009090 2.8e-27 127.9 124 50.0
Glyma.10G265500 Glycine max HOM05D007208 ORTHO05D009090 1.8e-26 125.2 92 80.4
PSO541G2896 Papaver somniferum HOM05D007208 ORTHO05D009090 2.4e-26 124.8 180 38.3
Hma1.2p1_0875F.1_g231460 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 1.5e-25 122.1 196 38.3
PSO675G0351 Papaver somniferum HOM05D007208 ORTHO05D009090 1.5e-25 122.1 172 37.8
Manes.12G087100 Manihot esculenta HOM05D007208 ORTHO05D009090 7.7e-25 119.8 141 42.6
HanXRQChr17g0557691 Helianthus annuus HOM05D007208 ORTHO05D009090 1.0e-24 119.4 92 73.9
Duzib248G0625 Durio zibethinus HOM05D007208 ORTHO05D009090 2.9e-24 117.9 86 82.6
HPP92_009506 Vanilla planifolia HOM05D007208 ORTHO05D009090 2.9e-24 117.9 202 36.6
CDE05G2253 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 1.2e-22 112.5 106 45.3
Gohir.A03G158600 Gossypium hirsutum HOM05D007208 ORTHO05D009090 1.0e-21 109.4 84 78.6
Gorai.005G204300 Gossypium raimondii HOM05D007208 ORTHO05D009090 1.4e-21 109.0 86 77.9
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 2.3e-21 108.2 85 74.1
Zm00001eb069300 Zea mays HOM05D007208 ORTHO05D009090 7.4e-20 103.2 84 58.3
arahy.Tifrunner.gnm1.ann1.55T2PK Arachis hypogaea HOM05D007208 ORTHO05D009090 1.4e-18 99.0 195 36.9
CDE05G0255 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 1.8e-18 98.6 79 57.0
RcHm_v2.0_Chr2g0162291 Rosa chinensis HOM05D007208 ORTHO05D009090 1.8e-18 98.6 79 59.5
SEGI_00392 Sequoiadendron giganteum HOM05D007208 ORTHO05D009090 6.9e-18 96.7 88 58.0
AUR62014989 Chenopodium quinoa HOM05D007208 ORTHO05D009090 7.7e-17 93.2 76 57.9
DCAR_021232 Daucus carota HOM05D007208 ORTHO05D009090 4.7e-14 84.0 86 65.1
arahy.Tifrunner.gnm1.ann1.APG80P Arachis hypogaea HOM05D007208 ORTHO05D009090 1.4e-13 82.4 67 79.1
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 4.8e-11 73.9 60 63.3
Os07g0491500 Oryza sativa ssp. japonica HOM05D007208 ORTHO05D009090 1.2e-09 69.3 87 55.2
SEGI_16657 Sequoiadendron giganteum HOM05D005337 ORTHO05D023551 3.5e-09 67.8 110 31.8
MD09G1090900 Malus domestica HOM05D007208 ORTHO05D009090 1.0e-08 66.2 41 70.7
SEGI_19483 Sequoiadendron giganteum HOM05D006232 ORTHO05D007746 1.7e-08 65.5 95 36.8
FAN14G2434 Fragaria x ananassa HOM05D007208 ORTHO05D009090 3.8e-08 64.3 39 74.4
MD12G1044100 Malus domestica HOM05D006596 ORTHO05D008497 6.5e-08 63.5 108 32.4
SEGI_12141 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 8.5e-08 63.2 120 26.7
Hma1.2p1_0969F.1_g242592 Hydrangea macrophylla HOM05D006596 ORTHO05D008497 1.1e-07 62.8 115 30.4
Hma1.2p1_0969F.1_g242594 Hydrangea macrophylla HOM05D006596 ORTHO05D008497 1.1e-07 62.8 115 30.4
PSO339G5577 Papaver somniferum HOM05D006596 ORTHO05D008497 1.1e-07 62.8 164 25.0
PSO384G2212 Papaver somniferum HOM05D006596 ORTHO05D008497 1.1e-07 62.8 136 26.5
Mapoly0122s0044 Marchantia polymorpha HOM05D006596 ORTHO05D006702 1.9e-07 62.0 111 27.0
Prupe.1G322900 Prunus persica HOM05D000424 ORTHO05D000355 2.5e-07 61.6 152 26.3
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 5.5e-07 60.5 128 26.6
Potri.006G200800 Populus trichocarpa HOM05D006596 ORTHO05D008497 9.4e-07 59.7 148 25.0
Sabra06G0154500 Salix brachista HOM05D006596 ORTHO05D008497 9.4e-07 59.7 134 26.9
ECA238G2420 Erigeron canadensis HOM05D006596 ORTHO05D008497 1.6e-06 58.9 115 28.7
Dinv11886 Davidia involucrata HOM05D006596 ORTHO05D008497 2.1e-06 58.5 115 28.7
Phvul.003G205300 Phaseolus vulgaris HOM05D002460 ORTHO05D002716 2.1e-06 58.5 135 25.9
THA.LOC104816628 Tarenaya hassleriana HOM05D006596 ORTHO05D008497 2.1e-06 58.5 146 25.3
ECA247G0350 Erigeron canadensis HOM05D002460 ORTHO05D002716 2.7e-06 58.2 115 30.4
FvH4_6g41080 Fragaria vesca HOM05D003210 ORTHO05D000001 2.7e-06 58.2 123 30.9
FAN14G2019 Fragaria x ananassa HOM05D003210 ORTHO05D000001 2.7e-06 58.2 123 30.9
CDE05G1884 Ceratophyllum demersum HOM05D006503 ORTHO05D008116 4.7e-06 57.4 103 31.1
RhsimUnG0134300 Rhododendron simsii HOM05D000424 ORTHO05D000355 4.7e-06 57.4 121 28.9
RhsimUnG0143400 Rhododendron simsii HOM05D000424 ORTHO05D000355 4.7e-06 57.4 121 28.9
Migut.B00654 Erythranthe guttata HOM05D006080 ORTHO05D007382 6.1e-06 57.0 148 27.0
Gohir.D03G092300 Gossypium hirsutum HOM05D000424 ORTHO05D000355 6.1e-06 57.0 211 24.2
Dinv13001 Davidia involucrata HOM05D000424 ORTHO05D000355 8.0e-06 56.6 135 26.7
FAN05G1838 Fragaria x ananassa HOM05D003210 ORTHO05D000001 8.0e-06 56.6 116 31.0
VMungo1215G2415 Vigna mungo HOM05D002460 ORTHO05D002716 8.0e-06 56.6 135 25.9


User provided reference genes

Program Settings