Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 8.1e-269 929.9 481 100.0
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 6.8e-199 697.6 482 74.9
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 7.7e-195 684.1 473 73.6
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 2.9e-194 682.2 479 72.4
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 8.0e-192 674.1 479 72.7
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 8.9e-191 670.6 473 71.0
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 1.2e-190 670.2 479 70.8
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 5.7e-190 667.9 473 71.0
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 5.7e-190 667.9 473 70.6
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 6.3e-189 664.5 473 70.8
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 8.3e-189 664.1 479 70.6
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 7.0e-188 661.0 479 70.6
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 2.0e-187 659.4 495 68.1
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 3.5e-187 658.7 479 70.8
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 2.9e-186 655.6 479 70.4
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 4.3e-185 651.7 479 68.9
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 4.4e-182 641.7 468 69.9
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 9.8e-182 640.6 491 67.6
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 1.7e-181 639.8 468 69.7
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 2.2e-181 639.4 473 68.7
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 2.2e-181 639.4 482 68.3
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 4.1e-180 635.2 473 67.9
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 1.2e-179 633.6 467 68.3
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 2.7e-179 632.5 444 72.5
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 3.5e-179 632.1 481 68.2
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 7.8e-179 630.9 474 68.4
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 7.8e-179 630.9 474 68.4
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 3.0e-178 629.0 475 67.6
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 3.9e-178 628.6 467 66.0
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 3.9e-178 628.6 473 68.1
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 1.9e-177 626.3 481 66.3
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 1.9e-177 626.3 473 67.2
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 4.3e-177 625.2 481 66.1
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 1.6e-176 623.2 475 66.9
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 1.1e-175 620.5 475 65.5
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 1.4e-175 620.2 481 67.2
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 3.1e-175 619.0 441 73.0
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 4.0e-175 618.6 473 65.8
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 6.8e-175 617.8 480 65.6
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 2.6e-174 615.9 473 66.2
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.6e-174 615.9 481 63.8
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 4.4e-174 615.1 475 64.6
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 7.5e-174 614.4 473 66.0
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 3.2e-172 609.0 475 64.8
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 7.0e-172 607.8 488 62.9
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 7.0e-172 607.8 475 65.7
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 9.2e-172 607.4 475 65.7
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 3.0e-170 602.4 472 66.3
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 3.9e-170 602.1 478 64.9
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 2.5e-169 599.4 477 63.5
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 4.3e-169 598.6 472 64.8
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 2.8e-168 595.9 484 62.8
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 4.7e-168 595.1 473 65.1
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 4.7e-168 595.1 472 64.6
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 6.2e-168 594.7 479 61.8
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 8.1e-168 594.3 484 62.8
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 1.1e-167 594.0 423 70.9
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 1.8e-167 593.2 501 63.1
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 2.3e-167 592.8 501 63.1
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 4.0e-167 592.0 473 61.5
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 4.0e-167 592.0 472 65.5
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 4.0e-167 592.0 474 65.8
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 8.9e-167 590.9 472 64.4
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 8.9e-167 590.9 472 65.3
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.2e-166 590.5 477 61.0
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 2.0e-166 589.7 477 62.1
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 4.4e-166 588.6 477 61.8
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 5.8e-166 588.2 477 61.6
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 5.8e-166 588.2 473 63.6
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 5.8e-166 588.2 476 60.9
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 1.3e-165 587.0 477 61.4
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 1.3e-165 587.0 477 61.4
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.3e-165 587.0 478 62.3
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 2.9e-165 585.9 479 60.8
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 2.9e-165 585.9 469 64.8
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 3.7e-165 585.5 477 61.2
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 6.4e-165 584.7 472 63.1
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 8.3e-165 584.3 485 62.1
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 1.1e-164 583.9 477 60.8
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 1.1e-164 583.9 477 60.8
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 2.4e-164 582.8 477 61.4
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 3.2e-164 582.4 482 62.0
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 3.2e-164 582.4 484 63.8
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 7.1e-164 581.3 486 61.9
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 9.2e-164 580.9 474 63.1
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.6e-163 580.1 478 61.5
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 2.1e-163 579.7 486 61.5
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 2.1e-163 579.7 486 61.7
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 2.7e-163 579.3 477 63.1
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 6.0e-163 578.2 485 61.4
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 6.0e-163 578.2 477 60.8
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 7.8e-163 577.8 486 61.7
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 1.7e-162 576.6 423 68.6
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 1.7e-162 576.6 474 63.7
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 3.0e-162 575.9 487 61.6
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 8.6e-162 574.3 473 61.9
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 1.9e-161 573.2 505 58.2
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 5.6e-161 571.6 476 61.3
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 3.6e-160 568.9 500 58.6
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 6.2e-160 568.2 516 59.5
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 1.8e-159 566.6 416 68.5
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 2.6e-158 562.8 475 61.9
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 7.6e-158 561.2 471 61.1
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 2.2e-157 559.7 479 59.9
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 4.9e-157 558.5 498 58.0
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 8.4e-157 557.8 547 55.6
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.9e-156 556.6 419 68.5
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 7.1e-156 554.7 503 59.4
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 1.3e-152 543.9 415 65.1
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.1e-152 543.1 460 58.7
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 6.4e-149 531.6 418 65.6
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.1e-148 530.8 408 66.4
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 5.4e-148 528.5 470 58.5
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 9.3e-148 527.7 479 57.0
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 2.0e-142 510.0 467 55.9
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 2.2e-141 506.5 474 55.1
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 1.2e-131 474.2 480 51.0
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 3.9e-130 469.2 476 53.8
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 7.4e-129 464.9 485 50.9
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 4.8e-128 462.2 480 49.6
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 6.2e-128 461.8 480 49.6
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 2.9e-125 453.0 456 51.3
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 3.8e-125 452.6 374 62.8
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 2.7e-123 446.4 477 48.6
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 1.3e-120 437.6 427 54.1
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 7.7e-118 428.3 303 70.0
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 4.6e-115 419.1 478 50.0
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 7.4e-113 411.8 316 66.5
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.4e-111 407.5 464 51.5
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 3.2e-108 396.4 467 46.7
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.2e-99 367.9 412 50.2
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 3.1e-95 353.2 287 63.8
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 4.7e-91 339.3 293 59.4
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.8e-90 337.4 479 40.5
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 3.4e-89 333.2 297 58.9
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 2.3e-74 283.9 158 89.9
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 3.9e-69 266.5 313 49.2
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 1.5e-68 264.6 220 60.5
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 2.3e-61 240.7 480 35.8
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 2.1e-59 234.2 160 73.8
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 3.9e-53 213.4 179 57.5
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.1e-50 205.3 183 59.0
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 9.9e-49 198.7 133 75.9
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 4.9e-48 196.4 195 54.4
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 8.9e-42 175.6 125 67.2
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 2.1e-38 164.5 121 71.1
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 5.8e-33 146.4 101 72.3
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 2.4e-31 141.0 116 63.8
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 1.9e-28 131.3 112 63.4
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 7.1e-23 112.8 99 52.5
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 4.3e-20 103.6 81 61.7
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 4.3e-20 103.6 102 53.9
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 5.3e-18 96.7 63 73.0
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 2.2e-16 91.3 60 71.7
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 1.9e-12 78.2 58 63.8
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 9.0e-10 69.3 44 77.3
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.2e-09 68.9 41 80.5


User provided reference genes

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