Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold260G45850 Striga asiatica HOM05D011878 ORTHO05D016966 6.3e-134 480.7 232 100.0
SGA_v2.0_scaffold3G01819 Striga asiatica HOM05D011878 ORTHO05D011270 5.6e-34 148.7 104 76.0
SGA_v2.0_scaffold14G06875 Striga asiatica HOM05D011878 ORTHO05D011270 1.3e-27 127.5 132 56.1
SGA_v2.0_scaffold9G05028 Striga asiatica HOM05D000237 ORTHO05D016966 2.5e-26 123.2 62 95.2
Oeu064496.1 Olea europaea HOM05D000045 ORTHO05D011270 2.2e-22 110.2 119 49.6
SGA_v2.0_scaffold21G09318 Striga asiatica HOM05D000045 ORTHO05D011270 3.2e-21 106.3 112 50.0
SGA_v2.0_scaffold8G04271 Striga asiatica HOM05D011878 ORTHO05D011270 2.2e-17 93.6 77 67.5
Oeu062020.2 Olea europaea HOM05D000045 ORTHO05D000067 8.2e-17 91.7 105 48.6
SGA_v2.0_scaffold10G05309 Striga asiatica HOM05D011878 ORTHO05D011270 2.0e-15 87.0 92 51.1
SGA_v2.0_scaffold124G33518 Striga asiatica HOM05D000045 ORTHO05D011270 3.4e-15 86.3 77 61.0
SGA_v2.0_scaffold11G05883 Striga asiatica HOM05D000237 ORTHO05D016966 1.7e-14 84.0 44 88.6
SGA_v2.0_scaffold58G20369 Striga asiatica HOM05D000237 ORTHO05D001145 2.5e-13 80.1 78 50.0
SGA_v2.0_scaffold51G18700 Striga asiatica HOM05D011878 ORTHO05D011270 1.2e-12 77.8 82 53.7
SalBow1G0021 Salvia bowleyana HOM05D000237 ORTHO05D001145 6.1e-12 75.5 43 81.4
MSTRG.16902 Avicennia marina HOM05D000237 ORTHO05D001145 3.0e-11 73.2 40 85.0
MSTRG.19993 Avicennia marina HOM05D000237 ORTHO05D001145 3.9e-11 72.8 42 81.0
Migut.B00083 Erythranthe guttata HOM05D000237 ORTHO05D001145 3.9e-11 72.8 43 79.1
MSTRG.27639 Avicennia marina HOM05D000237 ORTHO05D001145 1.1e-10 71.2 43 72.1
Rhsim06G0088300 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.1e-10 71.2 110 36.4
Rhsim01G0177800 Rhododendron simsii HOM05D000045 ORTHO05D000067 4.4e-10 69.3 108 38.0
Rhsim05G0110700 Rhododendron simsii HOM05D000045 ORTHO05D011270 4.4e-10 69.3 98 40.8
Rhsim05G0121900 Rhododendron simsii HOM05D000045 ORTHO05D000067 4.4e-10 69.3 108 38.0
Rhsim10G0159200 Rhododendron simsii HOM05D000045 ORTHO05D000067 5.7e-10 68.9 108 38.9
Rhsim09G0080800 Rhododendron simsii HOM05D000045 ORTHO05D011270 9.7e-10 68.2 85 41.2
DCAR_003168 Daucus carota HOM05D000237 ORTHO05D001145 1.7e-09 67.4 40 72.5
HanXRQChr10g0300891 Helianthus annuus HOM05D000237 ORTHO05D001145 1.7e-09 67.4 81 43.2
Rhsim02G0163600 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.7e-09 67.4 108 37.0
Rhsim11G0078300 Rhododendron simsii HOM05D000045 ORTHO05D011270 1.7e-09 67.4 121 33.1
Rhsim13G0132100 Rhododendron simsii HOM05D000045 ORTHO05D010036 1.7e-09 67.4 109 34.9
SGA_v2.0_scaffold177G39432 Striga asiatica HOM05D011878 ORTHO05D011270 1.7e-09 67.4 82 53.7
TAR376G0531 Trochodendron aralioides HOM05D000237 ORTHO05D001145 2.2e-09 67.0 41 68.3
Rhsim04G0171600 Rhododendron simsii HOM05D000045 ORTHO05D000067 3.7e-09 66.2 110 34.5
TWI14G0214 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 3.7e-09 66.2 110 38.2
TWI53G2134 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 4.8e-09 65.9 109 37.6
TWI79G0465 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 4.8e-09 65.9 109 37.6
ECA234G3036 Erigeron canadensis HOM05D000237 ORTHO05D001145 1.1e-08 64.7 81 40.7
Rhsim05G0121500 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.1e-08 64.7 110 34.5
Rhsim08G0146600 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.1e-08 64.7 110 35.5
RhsimUnG0116300 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.1e-08 64.7 108 35.2
Aqoxy4G01093 Aquilegia oxysepala HOM05D000045 ORTHO05D000067 1.8e-08 63.9 109 36.7
CANSAT25G0515 Cannabis sativa HOM05D000237 ORTHO05D001145 1.8e-08 63.9 38 71.1
Ciclev10027936m.g Citrus clementina HOM05D000237 ORTHO05D001145 1.8e-08 63.9 73 41.1
Manes.04G075980 Manihot esculenta HOM05D000237 ORTHO05D001145 1.8e-08 63.9 42 59.5
Rhsim09G0160500 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.8e-08 63.9 134 32.8
CSS0005743 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D001145 2.4e-08 63.5 41 63.4
TWI53G1228 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 2.4e-08 63.5 109 37.6
TWI56G0811 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 2.4e-08 63.5 109 37.6
Oeu005711.1 Olea europaea HOM05D000237 ORTHO05D001145 3.1e-08 63.2 40 67.5
Rhsim03G0080900 Rhododendron simsii HOM05D000045 ORTHO05D000067 3.1e-08 63.2 97 38.1
Aqoxy3G00990 Aquilegia oxysepala HOM05D000045 ORTHO05D000067 4.1e-08 62.8 109 35.8
Aqoxy7G02431 Aquilegia oxysepala HOM05D000045 ORTHO05D000067 4.1e-08 62.8 109 35.8
Rhsim07G0160800 Rhododendron simsii HOM05D000045 ORTHO05D000067 4.1e-08 62.8 100 35.0
Sc08g0002960 Simmondsia chinensis HOM05D000237 ORTHO05D001145 4.1e-08 62.8 41 63.4
TWI75G0161 Tripterygium wilfordii HOM05D000237 ORTHO05D001145 4.1e-08 62.8 73 39.7
Lj9A393G50 Lonicera japonica HOM05D000237 ORTHO05D016966 5.3e-08 62.4 40 67.5
Cc09_g10140 Coffea canephora HOM05D000237 ORTHO05D001145 7.0e-08 62.0 40 65.0
Lsat_1_v5_gn_4_71680 Lactuca sativa HOM05D000237 ORTHO05D001145 7.0e-08 62.0 81 39.5
Oeu026677.1 Olea europaea HOM05D000237 ORTHO05D001145 7.0e-08 62.0 40 65.0
Peaxi162Scf00362g00069 Petunia axillaris HOM05D000237 ORTHO05D001145 7.0e-08 62.0 40 62.5
TWI31G1262 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 7.0e-08 62.0 110 38.2
CiPaw.05G081900 Carya illinoinensis HOM05D000237 ORTHO05D001145 9.1e-08 61.6 39 64.1
Ciclev10013881m.g Citrus clementina HOM05D000045 ORTHO05D000067 9.1e-08 61.6 109 36.7
RhsimUnG0089200 Rhododendron simsii HOM05D000045 ORTHO05D000067 9.1e-08 61.6 56 51.8
TWI14G1038 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 9.1e-08 61.6 109 39.4
Atru.chr5.3315 Acer truncatum HOM05D000237 ORTHO05D001145 1.2e-07 61.2 40 57.5
Cfa005238 Carpinus fangiana HOM05D000237 ORTHO05D001145 1.2e-07 61.2 40 62.5
Haze_02144 Corylus avellana HOM05D000237 ORTHO05D001145 1.2e-07 61.2 40 62.5
Rhsim07G0159000 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.2e-07 61.2 115 36.5
Gohir.A01G168400 Gossypium hirsutum HOM05D000237 ORTHO05D001145 1.5e-07 60.8 83 39.8
Oeu006683.1 Olea europaea HOM05D000237 ORTHO05D001145 1.5e-07 60.8 115 36.5
Oeu006684.1 Olea europaea HOM05D000237 ORTHO05D001145 1.5e-07 60.8 115 36.5
QL11p050194 Quercus lobata HOM05D000237 ORTHO05D001145 1.5e-07 60.8 83 37.3
TWI79G1218 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 1.5e-07 60.8 108 38.0
Manes.11G094000 Manihot esculenta HOM05D000237 ORTHO05D001145 2.0e-07 60.5 40 60.0
TAR628G0790 Trochodendron aralioides HOM05D000237 ORTHO05D001145 2.0e-07 60.5 40 62.5
MD15G1134800 Malus domestica HOM05D000237 ORTHO05D001145 2.6e-07 60.1 49 59.2
Rhsim05G0139300 Rhododendron simsii HOM05D000045 ORTHO05D000067 2.6e-07 60.1 108 33.3
Rhsim08G0139400 Rhododendron simsii HOM05D000045 ORTHO05D000067 2.6e-07 60.1 100 38.0
Sabra09G0104500 Salix brachista HOM05D000237 ORTHO05D001145 2.6e-07 60.1 42 54.8
Solyc01g111570.3 Solanum lycopersicum HOM05D000237 ORTHO05D001145 2.6e-07 60.1 40 60.0
Sopen01g053610 Solanum pennellii HOM05D000237 ORTHO05D001145 2.6e-07 60.1 40 60.0
CSS0029298 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D001145 3.4e-07 59.7 81 37.0
Potri.009G134700 Populus trichocarpa HOM05D000237 ORTHO05D001145 4.5e-07 59.3 42 54.8
Prupe.4G275600 Prunus persica HOM05D000237 ORTHO05D001145 4.5e-07 59.3 42 59.5
Lj1g0025999 Lotus japonicus HOM05D000237 ORTHO05D001145 5.9e-07 58.9 45 55.6
Nitab4.5_0003914g0020 Nicotiana tabacum HOM05D000237 ORTHO05D001145 5.9e-07 58.9 40 57.5
PGSC0003DMG402006188 Solanum tuberosum HOM05D000237 ORTHO05D001145 5.9e-07 58.9 40 60.0
Cpa.g.sc37.139 Carica papaya HOM05D000237 ORTHO05D001145 7.7e-07 58.5 74 39.2
Nitab4.5_0000283g0320 Nicotiana tabacum HOM05D000237 ORTHO05D001145 7.7e-07 58.5 40 60.0
Rhsim10G0098100 Rhododendron simsii HOM05D000006 ORTHO05D010036 7.7e-07 58.5 108 33.3
VMungo1127G1359 Vigna mungo HOM05D000237 ORTHO05D001145 7.7e-07 58.5 37 64.9
CAN.G588.76 Capsicum annuum HOM05D000237 ORTHO05D001145 1.0e-06 58.2 40 57.5
MELO3C023218.2 Cucumis melo HOM05D000237 ORTHO05D001145 1.0e-06 58.2 45 51.1
Oeu032610.1 Olea europaea HOM05D000045 ORTHO05D000611 1.0e-06 58.2 90 40.0
Rhsim01G0174900 Rhododendron simsii HOM05D000045 ORTHO05D011270 1.0e-06 58.2 96 34.4
CiPaw.06G122200 Carya illinoinensis HOM05D000237 ORTHO05D001145 1.3e-06 57.8 95 33.7
Oeu024598.1 Olea europaea HOM05D000045 ORTHO05D014656 1.3e-06 57.8 86 37.2
Potri.004G175100 Populus trichocarpa HOM05D000237 ORTHO05D001145 1.3e-06 57.8 42 52.4
TWI60G1709 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 1.3e-06 57.8 115 33.9
TWI74G0282 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 1.3e-06 57.8 115 33.9
CsaV3_2G019550 Cucumis sativus L. HOM05D000237 ORTHO05D001145 1.7e-06 57.4 51 47.1
Duzib052G0867 Durio zibethinus HOM05D000237 ORTHO05D001145 1.7e-06 57.4 87 34.5
Gohir.D01G159400 Gossypium hirsutum HOM05D000237 ORTHO05D001145 1.7e-06 57.4 83 38.6
Gorai.002G197700 Gossypium raimondii HOM05D000237 ORTHO05D001145 1.7e-06 57.4 83 38.6
Sabra04G0116800 Salix brachista HOM05D000237 ORTHO05D001145 1.7e-06 57.4 42 52.4
Ciclev10033482m.g Citrus clementina HOM05D000045 ORTHO05D010036 2.2e-06 57.0 58 48.3
COL.COLO4_07938 Corchorus olitorius HOM05D000237 ORTHO05D016966 2.9e-06 56.6 43 55.8
Hund06434 Selenicereus undatus HOM05D000237 ORTHO05D001145 2.9e-06 56.6 73 39.7
vmacro17350 Vaccinium macrocarpon HOM05D000237 ORTHO05D001145 2.9e-06 56.6 46 56.5
ATR1001G006 Amborella trichopoda HOM05D000237 ORTHO05D001145 3.8e-06 56.2 38 60.5
EL10Ac9g21383 Beta vulgaris HOM05D000237 ORTHO05D001145 3.8e-06 56.2 73 39.7
Migut.C01069 Erythranthe guttata HOM05D000237 ORTHO05D001145 3.8e-06 56.2 45 51.1
Eucgr.I01415 Eucalyptus grandis HOM05D000237 ORTHO05D001145 3.8e-06 56.2 42 54.8
FvH4_1g24700 Fragaria vesca HOM05D000237 ORTHO05D001145 3.8e-06 56.2 36 63.9
FAN19G1791 Fragaria x ananassa HOM05D000237 ORTHO05D001145 3.8e-06 56.2 36 63.9
FAN28G2239 Fragaria x ananassa HOM05D000237 ORTHO05D001145 3.8e-06 56.2 36 63.9
PGR142G0871 Punica granatum HOM05D000237 ORTHO05D001145 3.8e-06 56.2 74 43.2
Hund00023 Selenicereus undatus HOM05D000237 ORTHO05D001145 3.8e-06 56.2 73 37.0
TWI73G0409 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 3.8e-06 56.2 59 45.8
CSS0019791 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D001145 5.0e-06 55.8 42 52.4
FAN26G2988 Fragaria x ananassa HOM05D000237 ORTHO05D001145 5.0e-06 55.8 36 63.9
Rhsim05G0060200 Rhododendron simsii HOM05D000237 ORTHO05D001145 5.0e-06 55.8 47 57.4
Thecc.02G060500 Theobroma cacao HOM05D000237 ORTHO05D001145 5.0e-06 55.8 87 34.5
COL.COLO4_17332 Corchorus olitorius HOM05D000237 ORTHO05D001145 6.5e-06 55.5 76 38.2
DCAR_022809 Daucus carota HOM05D000237 ORTHO05D001145 6.5e-06 55.5 38 57.9
Lj1g0028167 Lotus japonicus HOM05D000237 ORTHO05D001145 6.5e-06 55.5 38 57.9
RcHm_v2.0_Chr6g0251891 Rosa chinensis HOM05D000237 ORTHO05D001145 6.5e-06 55.5 38 55.3
arahy.Tifrunner.gnm1.ann1.Q6N5X0 Arachis hypogaea HOM05D000237 ORTHO05D001145 8.5e-06 55.1 42 57.1
A08p28920 Brassica napus HOM05D000237 ORTHO05D001145 8.5e-06 55.1 47 46.8
CSS0014669 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D001145 8.5e-06 55.1 42 52.4
RcHm_v2.0_Chr2g0122201 Rosa chinensis HOM05D000237 ORTHO05D001145 8.5e-06 55.1 36 63.9


User provided reference genes

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