Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 1.5e-68 262.7 134 100.0
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 5.5e-66 254.2 134 95.5
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 2.0e-63 245.7 134 91.0
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 1.8e-61 239.2 132 89.4
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 2.2e-59 232.3 134 86.6
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 1.5e-58 229.6 134 84.3
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 3.6e-57 224.9 134 82.1
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 3.6e-57 224.9 134 82.1
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 8.0e-57 223.8 134 82.1
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 1.0e-56 223.4 134 82.8
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 3.0e-56 221.9 134 81.3
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 5.2e-56 221.1 134 79.9
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 3.4e-55 218.4 135 80.0
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 2.8e-54 215.3 177 65.5
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 2.8e-54 215.3 129 80.6
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 4.8e-54 214.5 130 79.2
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 6.3e-54 214.2 128 78.9
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 6.3e-54 214.2 130 78.5
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 8.3e-54 213.8 129 81.4
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 1.8e-53 212.6 128 78.9
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 7.0e-53 210.7 129 77.5
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 9.1e-53 210.3 129 77.5
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 9.1e-53 210.3 126 81.7
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 1.2e-52 209.9 126 81.7
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 1.6e-52 209.5 124 80.6
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 2.0e-52 209.1 126 81.7
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 2.0e-52 209.1 130 76.9
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 2.7e-52 208.8 131 77.9
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 4.5e-52 208.0 130 76.9
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 4.5e-52 208.0 128 79.7
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.0e-51 206.8 126 80.2
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 1.0e-51 206.8 129 79.1
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 1.0e-51 206.8 128 78.9
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 1.0e-51 206.8 128 78.9
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 1.3e-51 206.5 130 76.9
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 1.7e-51 206.1 129 78.3
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 2.2e-51 205.7 128 78.9
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 2.9e-51 205.3 124 78.2
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 3.8e-51 204.9 124 79.8
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 3.8e-51 204.9 124 79.0
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 3.8e-51 204.9 127 76.4
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 5.0e-51 204.5 124 78.2
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 5.0e-51 204.5 124 78.2
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 5.0e-51 204.5 124 78.2
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 6.5e-51 204.1 128 77.3
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 8.5e-51 203.8 124 79.0
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 8.5e-51 203.8 129 76.7
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 8.5e-51 203.8 130 75.4
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 1.5e-50 203.0 124 79.0
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 1.5e-50 203.0 128 75.8
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 1.9e-50 202.6 128 77.3
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 1.9e-50 202.6 124 76.6
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 2.5e-50 202.2 129 75.2
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 3.2e-50 201.8 128 75.0
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 3.2e-50 201.8 129 76.0
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 3.2e-50 201.8 129 76.0
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 3.2e-50 201.8 129 76.0
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 4.2e-50 201.4 126 75.4
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 5.5e-50 201.1 124 76.6
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 7.2e-50 200.7 128 77.3
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 7.2e-50 200.7 128 77.3
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 7.2e-50 200.7 128 75.0
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 9.4e-50 200.3 118 80.5
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 1.2e-49 199.9 118 80.5
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.1e-49 199.1 128 76.6
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.1e-49 199.1 128 76.6
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 2.1e-49 199.1 128 75.0
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.7e-49 198.7 128 76.6
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 2.7e-49 198.7 131 74.0
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 3.6e-49 198.4 129 74.4
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 3.6e-49 198.4 128 74.2
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 3.6e-49 198.4 129 74.4
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.7e-49 198.0 128 76.6
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 4.7e-49 198.0 131 74.8
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 4.7e-49 198.0 128 74.2
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 6.1e-49 197.6 128 75.8
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 6.1e-49 197.6 129 72.9
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 8.0e-49 197.2 128 73.4
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 8.0e-49 197.2 128 73.4
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 1.0e-48 196.8 130 73.1
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 1.8e-48 196.1 128 73.4
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 2.3e-48 195.7 125 73.6
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 2.3e-48 195.7 125 76.0
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 6.8e-48 194.1 128 75.8
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 6.8e-48 194.1 127 74.8
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 8.8e-48 193.7 126 73.0
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 8.8e-48 193.7 129 74.4
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 8.8e-48 193.7 129 74.4
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 1.2e-47 193.4 126 73.0
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 1.2e-47 193.4 126 73.0
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 1.2e-47 193.4 128 73.4
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.2e-47 193.4 124 74.2
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 1.5e-47 193.0 126 73.0
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 2.0e-47 192.6 126 73.0
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 2.0e-47 192.6 124 73.4
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 2.6e-47 192.2 124 74.2
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 3.4e-47 191.8 126 73.0
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 3.4e-47 191.8 126 73.0
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 3.4e-47 191.8 126 73.0
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 7.5e-47 190.7 126 72.2
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 7.5e-47 190.7 126 72.2
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 7.5e-47 190.7 126 72.2
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 7.5e-47 190.7 124 73.4
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 1.3e-46 189.9 129 70.5
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 6.3e-46 187.6 129 72.1
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 1.8e-45 186.0 127 71.7
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 4.1e-45 184.9 124 73.4
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 9.1e-45 183.7 124 70.2
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 1.6e-44 183.0 124 70.2
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 4.2e-42 174.9 125 70.4
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 2.1e-41 172.6 109 72.5
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 4.7e-41 171.4 103 79.6
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 5.4e-37 157.9 129 64.3
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 1.7e-35 152.9 96 71.9
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 2.8e-33 145.6 111 64.9
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 2.0e-31 139.4 82 76.8
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 2.2e-30 136.0 84 78.6
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.1e-29 133.7 82 78.0
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 7.0e-29 131.0 86 75.6
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 1.3e-27 126.7 102 60.8
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 4.3e-26 121.7 79 75.9
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 1.8e-24 116.3 88 60.2
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 7.5e-23 110.9 89 60.7
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 1.9e-21 106.3 129 49.6
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 7.3e-18 94.4 69 66.7
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 2.1e-17 92.8 69 66.7
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 3.6e-17 92.0 61 73.8
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 4.7e-17 91.7 82 53.7
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.2e-15 87.0 56 76.8
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 2.4e-13 79.3 81 48.1
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 6.0e-12 74.7 116 44.8
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 5.1e-11 71.6 54 68.5
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 3.3e-10 68.9 60 66.7
Nitab4.5_0005166g0030 Nicotiana tabacum HOM05D001081 ORTHO05D025899 8.1e-09 64.3 60 63.3
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 1.4e-08 63.5 59 47.5
Nitab4.5_0008435g0040 Nicotiana tabacum HOM05D002996 ORTHO05D025899 1.4e-08 63.5 60 63.3
Nitab4.5_0026266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 1.4e-08 63.5 60 65.0
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 1.8e-08 63.2 36 80.6


User provided reference genes

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