Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 3.1e-113 411.8 203 100.0
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 3.4e-35 152.5 186 49.5
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 1.0e-34 151.0 186 44.1
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 7.1e-33 144.8 169 48.5
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 2.1e-32 143.3 177 48.6
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 4.6e-32 142.1 172 47.7
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 7.9e-32 141.4 178 47.2
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 1.0e-31 141.0 167 51.5
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 3.9e-31 139.0 189 45.5
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 6.7e-31 138.3 180 44.4
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 8.7e-31 137.9 188 44.1
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.9e-30 136.7 183 47.0
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 4.3e-30 135.6 169 47.9
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 7.4e-30 134.8 168 45.2
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 9.6e-30 134.4 193 44.6
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 9.6e-30 134.4 182 44.0
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 1.3e-29 134.0 206 41.7
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 1.6e-29 133.7 187 42.8
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 6.3e-29 131.7 194 41.2
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 1.1e-28 131.0 190 43.2
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 1.8e-28 130.2 185 43.8
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.4e-28 129.8 185 43.2
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 3.1e-28 129.4 178 45.5
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 1.2e-27 127.5 173 44.5
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 1.2e-27 127.5 188 40.4
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 2.0e-27 126.7 174 46.0
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 2.0e-27 126.7 199 41.2
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 2.6e-27 126.3 191 43.5
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 3.4e-27 125.9 178 44.9
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 3.4e-27 125.9 168 49.4
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 4.5e-27 125.6 185 42.2
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 4.5e-27 125.6 191 43.5
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 1.0e-26 124.4 168 44.6
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.3e-26 124.0 163 44.2
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.3e-26 124.0 163 44.2
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 1.7e-26 123.6 185 41.1
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 2.2e-26 123.2 179 41.9
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 2.2e-26 123.2 193 38.9
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.9e-26 122.9 163 44.8
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 3.8e-26 122.5 188 37.8
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 5.0e-26 122.1 185 41.1
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 8.4e-26 121.3 168 45.2
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.1e-25 120.9 168 42.9
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 1.1e-25 120.9 179 39.1
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.5e-25 119.8 179 43.0
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 4.2e-25 119.0 173 39.9
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 9.3e-25 117.9 193 39.9
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 9.3e-25 117.9 182 40.7
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 1.2e-24 117.5 180 38.9
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 1.2e-24 117.5 186 38.7
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 2.1e-24 116.7 206 40.8
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 2.1e-24 116.7 198 40.4
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 2.7e-24 116.3 172 44.8
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 6.1e-24 115.2 168 42.3
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 6.1e-24 115.2 182 39.0
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 6.1e-24 115.2 185 42.2
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 1.0e-23 114.4 179 42.5
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 1.0e-23 114.4 187 42.2
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.3e-23 114.0 172 41.3
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 1.8e-23 113.6 178 42.7
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 2.3e-23 113.2 167 46.1
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 2.3e-23 113.2 196 38.3
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 2.3e-23 113.2 167 44.3
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 3.0e-23 112.8 200 39.5
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 3.9e-23 112.5 174 36.8
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 3.9e-23 112.5 207 37.7
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 3.9e-23 112.5 183 41.0
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 6.7e-23 111.7 183 37.2
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 1.1e-22 110.9 189 35.4
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 1.5e-22 110.5 177 36.2
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 1.5e-22 110.5 177 36.2
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 1.5e-22 110.5 175 39.4
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 2.5e-22 109.8 177 37.9
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 2.5e-22 109.8 182 37.4
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 3.3e-22 109.4 177 41.2
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 4.3e-22 109.0 175 36.6
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 4.3e-22 109.0 174 35.6
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 4.3e-22 109.0 173 39.3
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 5.7e-22 108.6 172 37.8
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 5.7e-22 108.6 163 43.6
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 7.4e-22 108.2 179 36.9
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 7.4e-22 108.2 177 40.7
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 7.4e-22 108.2 177 41.2
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 9.7e-22 107.8 170 37.6
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 9.7e-22 107.8 176 39.8
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.3e-21 107.5 188 38.3
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 1.3e-21 107.5 191 36.1
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 1.6e-21 107.1 170 37.1
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 1.6e-21 107.1 187 42.2
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 1.6e-21 107.1 179 39.1
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 1.6e-21 107.1 170 39.4
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 2.2e-21 106.7 172 39.0
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 2.2e-21 106.7 186 36.0
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 4.8e-21 105.5 190 39.5
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 8.2e-21 104.8 174 35.6
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 8.2e-21 104.8 174 35.6
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 1.1e-20 104.4 206 35.0
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 1.1e-20 104.4 174 35.6
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 1.1e-20 104.4 174 35.6
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 1.1e-20 104.4 174 35.6
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 1.8e-20 103.6 171 36.8
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 2.4e-20 103.2 171 36.3
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 2.4e-20 103.2 171 36.3
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 2.4e-20 103.2 171 36.3
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 2.4e-20 103.2 171 36.3
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 3.1e-20 102.8 171 36.3
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 3.1e-20 102.8 166 38.6
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 5.3e-20 102.1 173 36.4
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 5.3e-20 102.1 173 36.4
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 5.3e-20 102.1 173 36.4
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 5.3e-20 102.1 179 37.4
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 6.9e-20 101.7 189 38.1
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 9.0e-20 101.3 191 38.7
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 9.0e-20 101.3 181 40.3
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 9.0e-20 101.3 209 36.4
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 1.2e-19 100.9 170 36.5
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 1.2e-19 100.9 170 36.5
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 1.2e-19 100.9 208 34.1
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 1.5e-19 100.5 183 37.2
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 2.6e-19 99.8 170 36.5
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.6e-19 99.8 178 36.0
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 2.6e-19 99.8 198 37.9
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 3.4e-19 99.4 220 35.9
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 3.4e-19 99.4 207 36.7
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 5.9e-19 98.6 186 38.7
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 1.0e-18 97.8 191 37.2
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.0e-18 97.8 187 36.9
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.3e-18 97.4 167 39.5
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 1.3e-18 97.4 220 32.7
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 2.2e-18 96.7 163 41.1
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 5.0e-18 95.5 180 36.1
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 1.9e-17 93.6 178 36.0
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 2.5e-17 93.2 167 35.3
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 3.2e-17 92.8 243 32.1
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 4.2e-17 92.4 172 34.9
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 9.4e-17 91.3 165 35.8
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 1.2e-16 90.9 172 35.5
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 1.2e-16 90.9 142 38.0
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.6e-16 90.5 175 36.6
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.6e-16 90.5 162 37.7
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.1e-16 90.1 171 39.8
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 6.1e-16 88.6 196 33.7
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 1.0e-15 87.8 126 44.4
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.3e-15 86.7 166 39.2
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 3.0e-15 86.3 162 35.2
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 3.0e-15 86.3 162 35.2
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 3.0e-15 86.3 185 33.5
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 3.9e-15 85.9 163 33.7
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 5.1e-15 85.5 160 34.4
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 5.1e-15 85.5 160 34.4
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 6.7e-15 85.1 160 33.8
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 1.1e-14 84.3 189 32.3
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 3.3e-14 82.8 186 32.8
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 5.7e-14 82.0 184 32.1
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 9.7e-14 81.3 168 34.5
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 1.1e-12 77.8 125 37.6
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 1.4e-12 77.4 166 34.3
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 1.8e-12 77.0 168 30.4
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 7.7e-11 71.6 134 34.3
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 2.2e-10 70.1 161 32.3
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 8.5e-10 68.2 94 44.7
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 4.2e-09 65.9 132 34.1
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 9.4e-09 64.7 89 43.8
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 6.1e-08 62.0 103 35.0
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 1.0e-07 61.2 198 26.3
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 1.1e-06 57.8 121 33.9
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 4.4e-06 55.8 151 31.1
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.7e-06 55.5 124 36.3


User provided reference genes

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