Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G11087 Striga asiatica HOM05D008117 ORTHO05D010265 6.4e-51 203.8 100 100.0
MSTRG.24141 Avicennia marina HOM05D008117 ORTHO05D010265 3.3e-31 138.3 89 75.3
Oeu002001.1 Olea europaea HOM05D008117 ORTHO05D010265 7.1e-26 120.6 85 65.9
Sed0012248 Sechium edule HOM05D008117 ORTHO05D010265 2.8e-22 108.6 81 66.7
Lsat_1_v5_gn_1_112940 Lactuca sativa HOM05D006309 ORTHO05D007937 6.2e-22 107.5 81 66.7
Rhsim13G0192300 Rhododendron simsii HOM05D008117 ORTHO05D010265 2.4e-21 105.5 81 63.0
Ciclev10002965m.g Citrus clementina HOM05D008117 ORTHO05D010265 5.3e-21 104.4 76 64.5
Sc23g0000960 Simmondsia chinensis HOM05D008117 ORTHO05D010265 1.5e-20 102.8 85 61.2
DCAR_028229 Daucus carota HOM05D008117 ORTHO05D010265 4.5e-20 101.3 74 63.5
Manes.18G072200 Manihot esculenta HOM05D008117 ORTHO05D010265 7.6e-20 100.5 78 61.5
Sopen11g008360 Solanum pennellii HOM05D008117 ORTHO05D010265 7.6e-20 100.5 76 61.8
ClCG08G010860 Citrullus lanatus HOM05D008117 ORTHO05D010265 1.7e-19 99.4 81 60.5
RcHm_v2.0_Chr7g0240501 Rosa chinensis HOM05D008117 ORTHO05D010265 2.9e-19 98.6 81 58.0
FAN08G2903 Fragaria x ananassa HOM05D008117 ORTHO05D010265 3.8e-19 98.2 77 59.7
FAN13G1450 Fragaria x ananassa HOM05D008117 ORTHO05D010265 4.9e-19 97.8 77 58.4
SalBow6G0993 Salvia bowleyana HOM05D008117 ORTHO05D010265 4.9e-19 97.8 157 39.5
FvH4_5g38460 Fragaria vesca HOM05D008117 ORTHO05D010265 1.1e-18 96.7 77 58.4
PGSC0003DMG400006546 Solanum tuberosum HOM05D008117 ORTHO05D010265 1.1e-18 96.7 76 61.8
vmacro12526 Vaccinium macrocarpon HOM05D008117 ORTHO05D010265 1.1e-18 96.7 81 58.0
HPP92_011399 Vanilla planifolia HOM05D008117 ORTHO05D010265 1.1e-18 96.7 81 54.3
EL10Ac5g11972 Beta vulgaris HOM05D008117 ORTHO05D010265 1.4e-18 96.3 77 61.0
CSS0024149 Camellia sinensis var. sinensis HOM05D008117 ORTHO05D010265 1.4e-18 96.3 74 60.8
CsaV3_6G035660 Cucumis sativus L. HOM05D008117 ORTHO05D010265 1.4e-18 96.3 81 56.8
Gohir.A05G231100 Gossypium hirsutum HOM05D008117 ORTHO05D010265 1.4e-18 96.3 74 62.2
Thecc.08G115700 Theobroma cacao HOM05D008117 ORTHO05D010265 4.2e-18 94.7 74 62.2
Carub.0001s3375 Capsella rubella HOM05D008117 ORTHO05D010265 7.1e-18 94.0 78 56.4
CAN.G61.2 Capsicum annuum HOM05D008117 ORTHO05D010265 7.1e-18 94.0 76 57.9
Eucgr.F03736 Eucalyptus grandis HOM05D008117 ORTHO05D010265 7.1e-18 94.0 84 57.1
MD15G1359700 Malus domestica HOM05D008117 ORTHO05D010265 7.1e-18 94.0 77 61.0
Duzib041G0298 Durio zibethinus HOM05D008117 ORTHO05D010265 9.3e-18 93.6 73 60.3
CiPaw.05G230200 Carya illinoinensis HOM05D008117 ORTHO05D010265 1.6e-17 92.8 76 60.5
Sabra02G0071000 Salix brachista HOM05D008117 ORTHO05D010265 1.6e-17 92.8 75 60.0
Phvul.008G168800 Phaseolus vulgaris HOM05D008117 ORTHO05D010265 4.6e-17 91.3 76 59.2
PGR042G1408 Punica granatum HOM05D008117 ORTHO05D010265 4.6e-17 91.3 73 60.3
arahy.Tifrunner.gnm1.ann1.J5UY3S Arachis hypogaea HOM05D008117 ORTHO05D010265 7.9e-17 90.5 82 56.1
Nn5g27934 Nelumbo nucifera HOM05D008117 ORTHO05D010265 7.9e-17 90.5 85 55.3
arahy.Tifrunner.gnm1.ann1.V815ZK Arachis hypogaea HOM05D008117 ORTHO05D010265 1.0e-16 90.1 82 54.9
QL12p035434 Quercus lobata HOM05D008117 ORTHO05D010265 1.3e-16 89.7 74 58.1
Thhalv10009847m.g Eutrema salsugineum HOM05D008117 ORTHO05D010265 2.3e-16 89.0 78 55.1
Hund16816 Selenicereus undatus HOM05D008117 ORTHO05D010265 3.0e-16 88.6 74 60.8
Lj1g0006954 Lotus japonicus HOM05D008117 ORTHO05D010265 3.9e-16 88.2 76 56.6
Psat5g111920 Pisum sativum HOM05D008117 ORTHO05D010265 3.9e-16 88.2 74 58.1
Prupe.1G507400 Prunus persica HOM05D008117 ORTHO05D010265 6.7e-16 87.4 81 56.8
MELO3C030294.2 Cucumis melo HOM05D008117 ORTHO05D010265 8.7e-16 87.0 63 63.5
Glyma.13G084800 Glycine max HOM05D008117 ORTHO05D010265 8.7e-16 87.0 75 57.3
Glyma.14G166600 Glycine max HOM05D008117 ORTHO05D010265 1.1e-15 86.7 77 55.8
FAN04G0767 Fragaria x ananassa HOM05D008117 ORTHO05D010265 1.9e-15 85.9 84 51.2
EL10Ac1g00048 Beta vulgaris HOM05D008117 ORTHO05D010265 2.5e-15 85.5 80 57.5
CARHR035030 Cardamine hirsuta HOM05D008117 ORTHO05D010265 2.5e-15 85.5 78 53.8
AUR62002978 Chenopodium quinoa HOM05D008117 ORTHO05D010265 2.5e-15 85.5 70 60.0
CANSAT35G0099 Cannabis sativa HOM05D008117 ORTHO05D010265 3.3e-15 85.1 64 60.9
AT1G36380 Arabidopsis thaliana HOM05D008117 ORTHO05D010265 4.3e-15 84.7 79 55.7
Medtr5g062750 Medicago truncatula HOM05D008117 ORTHO05D010265 5.6e-15 84.3 74 55.4
A01p25940 Brassica napus HOM05D008117 ORTHO05D010265 1.3e-14 83.2 73 53.4
Gohir.D05G233600 Gossypium hirsutum HOM05D008117 ORTHO05D010265 1.3e-14 83.2 63 63.5
Gorai.009G241700 Gossypium raimondii HOM05D008117 ORTHO05D010265 1.3e-14 83.2 63 63.5
C01p32870 Brassica napus HOM05D008117 ORTHO05D010265 1.6e-14 82.8 77 51.9
Lalb_Chr04g0253261 Lupinus albus HOM05D008117 ORTHO05D010265 2.8e-14 82.0 77 58.4
BolC1t03228H Brassica oleracea HOM05D008117 ORTHO05D010265 3.7e-14 81.6 77 50.6
Potri.002G090100 Populus trichocarpa HOM05D008117 ORTHO05D010265 3.7e-14 81.6 73 54.8
Potri.005G171000 Populus trichocarpa HOM05D008117 ORTHO05D010265 1.4e-13 79.7 82 53.7
Os02g0552400 Oryza sativa ssp. japonica HOM05D008117 ORTHO05D010265 2.4e-13 79.0 73 52.1
Aa31LG6G9030 Aethionema arabicum HOM05D008117 ORTHO05D010265 9.0e-13 77.0 81 48.1
A05p19980 Brassica napus HOM05D008117 ORTHO05D010265 1.2e-12 76.6 71 52.1
BraA05t20905Z Brassica rapa HOM05D008117 ORTHO05D010265 1.2e-12 76.6 71 52.1
Zm00001eb243570 Zea mays HOM05D008117 ORTHO05D010265 2.6e-12 75.5 62 58.1
Zm00001eb227210 Zea mays HOM05D008117 ORTHO05D010265 3.4e-12 75.1 62 59.7
CDE08G1486 Ceratophyllum demersum HOM05D008117 ORTHO05D010265 1.1e-10 70.1 55 61.8
VMungo0647G2241 Vigna mungo HOM05D008117 ORTHO05D010265 1.4e-10 69.7 48 68.8
AagrBONN_evm.TU.Sc2ySwM_117.1449 Anthoceros agrestis HOM05D008117 ORTHO05D010265 4.2e-10 68.2 65 50.8
CDE06G1754 Ceratophyllum demersum HOM05D000001 ORTHO05D011242 2.5e-07 58.9 42 66.7
SEGI_19848 Sequoiadendron giganteum HOM05D008117 ORTHO05D010265 1.6e-06 56.2 65 49.2


User provided reference genes

Program Settings