Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G11050 Striga asiatica HOM05D000922 ORTHO05D403871 7.8e-172 607.1 313 100.0
DCAR_026150 Daucus carota HOM05D000922 ORTHO05D008200 4.5e-10 69.7 39 84.6
SGA_v2.0_scaffold90G27896 Striga asiatica HOM05D000922 ORTHO05D008200 4.5e-10 69.7 36 94.4
Migut.O00114 Erythranthe guttata HOM05D000922 ORTHO05D008200 1.0e-09 68.6 36 91.7
SGA_v2.0_scaffold116G32233 Striga asiatica HOM05D000922 ORTHO05D008200 2.2e-09 67.4 35 91.4
COL.COLO4_30070 Corchorus olitorius HOM05D000922 ORTHO05D008200 3.8e-09 66.6 36 86.1
SalBow1G6106 Salvia bowleyana HOM05D000922 ORTHO05D008200 6.5e-09 65.9 36 88.9
SalBow5G5253 Salvia bowleyana HOM05D000922 ORTHO05D008200 6.5e-09 65.9 36 88.9
arahy.Tifrunner.gnm1.ann1.PQAW0Q Arachis hypogaea HOM05D000922 ORTHO05D008200 8.5e-09 65.5 40 75.0
Gohir.A09G171300 Gossypium hirsutum HOM05D000922 ORTHO05D008200 8.5e-09 65.5 36 83.3
Gohir.D09G167000 Gossypium hirsutum HOM05D000922 ORTHO05D008200 8.5e-09 65.5 36 83.3
Gorai.006G188800 Gossypium raimondii HOM05D000922 ORTHO05D008200 8.5e-09 65.5 36 83.3
Lsat_1_v5_gn_5_15061 Lactuca sativa HOM05D000922 ORTHO05D008200 1.4e-08 64.7 37 81.1
Nitab4.5_0008678g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 1.4e-08 64.7 40 72.5
CAN.G1166.6 Capsicum annuum HOM05D000922 ORTHO05D008200 1.9e-08 64.3 36 80.6
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 1.9e-08 64.3 36 80.6
RcHm_v2.0_Chr7g0193351 Rosa chinensis HOM05D000922 ORTHO05D008200 1.9e-08 64.3 37 83.8
Thecc.03G014600 Theobroma cacao HOM05D000922 ORTHO05D008200 1.9e-08 64.3 36 80.6
FAN13G3248 Fragaria x ananassa HOM05D000922 ORTHO05D008200 2.5e-08 63.9 38 78.9
arahy.Tifrunner.gnm1.ann1.3C9G4H Arachis hypogaea HOM05D000922 ORTHO05D008200 3.2e-08 63.5 33 87.9
arahy.Tifrunner.gnm1.ann1.RA2V7W Arachis hypogaea HOM05D000922 ORTHO05D008200 3.2e-08 63.5 33 87.9
Cc04_g12150 Coffea canephora HOM05D000922 ORTHO05D008200 3.2e-08 63.5 37 75.7
arahy.Tifrunner.gnm1.ann1.R1G0J4 Arachis hypogaea HOM05D000922 ORTHO05D008200 4.2e-08 63.2 40 72.5
MSTRG.11466 Avicennia marina HOM05D000922 ORTHO05D008200 4.2e-08 63.2 35 85.7
Phvul.003G201800 Phaseolus vulgaris HOM05D000922 ORTHO05D008200 4.2e-08 63.2 37 78.4
Potri.015G078600 Populus trichocarpa HOM05D000922 ORTHO05D008200 4.2e-08 63.2 39 76.9
Cpa.g.sc76.32 Carica papaya HOM05D000922 ORTHO05D008200 5.5e-08 62.8 33 87.9
CiPaw.11G024500 Carya illinoinensis HOM05D000922 ORTHO05D008200 5.5e-08 62.8 35 80.0
Dinv20636 Davidia involucrata HOM05D000922 ORTHO05D008200 5.5e-08 62.8 35 82.9
FvH4_5g05480 Fragaria vesca HOM05D000922 ORTHO05D008200 5.5e-08 62.8 37 81.1
FAN04G0130 Fragaria x ananassa HOM05D000922 ORTHO05D008200 5.5e-08 62.8 37 81.1
FAN08G1692 Fragaria x ananassa HOM05D000922 ORTHO05D008200 5.5e-08 62.8 37 81.1
FAN18G2418 Fragaria x ananassa HOM05D000922 ORTHO05D008200 5.5e-08 62.8 37 81.1
FAN18G3465 Fragaria x ananassa HOM05D000922 ORTHO05D008200 5.5e-08 62.8 37 81.1
PGR044G1577 Punica granatum HOM05D000922 ORTHO05D008200 5.5e-08 62.8 35 85.7
Glyma.17G088100 Glycine max HOM05D000922 ORTHO05D008200 7.2e-08 62.4 33 90.9
TAR629G0323 Trochodendron aralioides HOM05D000922 ORTHO05D008200 7.2e-08 62.4 39 69.2
AUR62013091 Chenopodium quinoa HOM05D000922 ORTHO05D008200 9.4e-08 62.0 35 80.0
Haze_07527 Corylus avellana HOM05D000922 ORTHO05D008200 9.4e-08 62.0 38 73.7
Eucgr.G00068 Eucalyptus grandis HOM05D000922 ORTHO05D008200 9.4e-08 62.0 36 80.6
Manes.14G064200 Manihot esculenta HOM05D000922 ORTHO05D008200 9.4e-08 62.0 33 87.9
Nitab4.5_0000514g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 9.4e-08 62.0 38 73.7
unitig_0.g1435 Utricularia gibba HOM05D000922 ORTHO05D008200 9.4e-08 62.0 36 83.3
VMungo1215G1163 Vigna mungo HOM05D000922 ORTHO05D008200 9.4e-08 62.0 38 73.7
Prupe.5G171600 Prunus persica HOM05D000922 ORTHO05D008200 1.2e-07 61.6 35 80.0
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 1.2e-07 61.6 35 82.9
Solyc03g112810.3 Solanum lycopersicum HOM05D000922 ORTHO05D008200 1.2e-07 61.6 36 75.0
PGSC0003DMG400018154 Solanum tuberosum HOM05D000922 ORTHO05D008200 1.2e-07 61.6 36 75.0
TWI39G0231 Tripterygium wilfordii HOM05D000922 ORTHO05D008200 1.2e-07 61.6 33 84.8
ClCG01G013230 Citrullus lanatus HOM05D000922 ORTHO05D008200 1.6e-07 61.2 35 80.0
CsaV3_1G008590 Cucumis sativus L. HOM05D000922 ORTHO05D008200 1.6e-07 61.2 35 80.0
QL10p010977 Quercus lobata HOM05D000922 ORTHO05D008200 1.6e-07 61.2 35 80.0
vmacro19401 Vaccinium macrocarpon HOM05D000922 ORTHO05D008200 1.6e-07 61.2 35 80.0
Nn3g16820 Nelumbo nucifera HOM05D000922 ORTHO05D008200 2.1e-07 60.8 33 81.8
Peaxi162Scf00089g01850 Petunia axillaris HOM05D000922 ORTHO05D008200 2.1e-07 60.8 34 79.4
Hund09449 Selenicereus undatus HOM05D000922 ORTHO05D008200 2.1e-07 60.8 36 75.0
arahy.Tifrunner.gnm1.ann1.RUR1T0 Arachis hypogaea HOM05D000034 ORTHO05D000037 2.7e-07 60.5 32 84.4
CSS0000249 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D008200 2.7e-07 60.5 35 77.1
AUR62010095 Chenopodium quinoa HOM05D000922 ORTHO05D008200 2.7e-07 60.5 35 77.1
MELO3C002273.2 Cucumis melo HOM05D000922 ORTHO05D008200 2.7e-07 60.5 35 80.0
Duzib205G0455 Durio zibethinus HOM05D000922 ORTHO05D008200 2.7e-07 60.5 35 80.0
SGA_v2.0_scaffold1G00583 Striga asiatica HOM05D000200 ORTHO05D000262 2.7e-07 60.5 42 83.3
ECA246G4361 Erigeron canadensis HOM05D000922 ORTHO05D008200 3.6e-07 60.1 33 87.9
Lj4g0019609 Lotus japonicus HOM05D000922 ORTHO05D008200 3.6e-07 60.1 33 81.8
MBI16_g39217_MAGBIO Magnolia biondii HOM05D000922 ORTHO05D008200 4.7e-07 59.7 35 71.4
Sabra15G0103100 Salix brachista HOM05D000922 ORTHO05D008200 4.7e-07 59.7 32 87.5
SHI38067 Sapria himalayana HOM05D000922 ORTHO05D008200 4.7e-07 59.7 38 71.1
Sed0005243 Sechium edule HOM05D000922 ORTHO05D008200 4.7e-07 59.7 35 77.1
GSVIVG01007722001 Vitis vinifera HOM05D000922 ORTHO05D008200 4.7e-07 59.7 35 80.0
EL10Ac5g12019 Beta vulgaris HOM05D000922 ORTHO05D008200 6.1e-07 59.3 39 69.2
BcaB02g09714 Brassica carinata HOM05D000922 ORTHO05D008200 6.1e-07 59.3 35 80.0
BcaC01g02547 Brassica carinata HOM05D000922 ORTHO05D008200 6.1e-07 59.3 35 80.0
C03p63610 Brassica napus HOM05D000922 ORTHO05D008200 6.1e-07 59.3 35 80.0
BolC3t18619H Brassica oleracea HOM05D000922 ORTHO05D008200 6.1e-07 59.3 35 80.0
BraA06t25925Z Brassica rapa HOM05D000922 ORTHO05D008200 6.1e-07 59.3 35 80.0
Ciclev10022297m.g Citrus clementina HOM05D000922 ORTHO05D008200 6.1e-07 59.3 34 79.4
Thhalv10004944m.g Eutrema salsugineum HOM05D000922 ORTHO05D008200 6.1e-07 59.3 35 80.0
MD06G1172200 Malus domestica HOM05D000922 ORTHO05D008200 6.1e-07 59.3 33 81.8
MD14G1178100 Malus domestica HOM05D000922 ORTHO05D008200 6.1e-07 59.3 33 81.8
Sp2g26130 Schrenkiella parvula HOM05D000922 ORTHO05D008200 6.1e-07 59.3 35 80.0
Migut.D00402 Erythranthe guttata HOM05D000200 ORTHO05D000262 7.9e-07 58.9 34 91.2
PGR044G0925 Punica granatum HOM05D000922 ORTHO05D008200 7.9e-07 58.9 35 77.1
Sc04g0001730 Simmondsia chinensis HOM05D000922 ORTHO05D008200 7.9e-07 58.9 33 81.8
THA.LOC104818216 Tarenaya hassleriana HOM05D000922 ORTHO05D008200 7.9e-07 58.9 35 80.0
AL8G40030 Arabidopsis lyrata HOM05D000922 ORTHO05D008200 1.0e-06 58.5 35 80.0
AT5G63000 Arabidopsis thaliana HOM05D000922 ORTHO05D008200 1.0e-06 58.5 35 80.0
Carub.0008s2371 Capsella rubella HOM05D000922 ORTHO05D008200 1.0e-06 58.5 35 80.0
CDE07G1875 Ceratophyllum demersum HOM05D000922 ORTHO05D008200 1.0e-06 58.5 34 76.5
CARHR276810 Cardamine hirsuta HOM05D000922 ORTHO05D008200 1.4e-06 58.2 33 84.8
HPP92_011872 Vanilla planifolia HOM05D000922 ORTHO05D008200 1.4e-06 58.2 35 74.3
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 1.8e-06 57.8 33 81.8
Aqoxy3G02881 Aquilegia oxysepala HOM05D000922 ORTHO05D008200 1.8e-06 57.8 38 71.1
EL10Ac4g09047 Beta vulgaris HOM05D000200 ORTHO05D000262 1.8e-06 57.8 54 64.8
unitig_26.g10119 Utricularia gibba HOM05D000200 ORTHO05D000262 1.8e-06 57.8 34 88.2
Atru.chr9.2496 Acer truncatum HOM05D000922 ORTHO05D008200 2.3e-06 57.4 31 83.9
A06p29780 Brassica napus HOM05D000922 ORTHO05D008200 2.3e-06 57.4 35 77.1
EL10Ac9g21439 Beta vulgaris HOM05D000922 ORTHO05D008200 3.0e-06 57.0 51 60.8
Cfa019117 Carpinus fangiana HOM05D000922 ORTHO05D008200 3.0e-06 57.0 32 78.1
Lj5C125T23 Lonicera japonica HOM05D000922 ORTHO05D008200 3.9e-06 56.6 33 81.8
SalBow4G0304 Salvia bowleyana HOM05D000200 ORTHO05D000262 3.9e-06 56.6 34 85.3
SalBow4G1735 Salvia bowleyana HOM05D000200 ORTHO05D000262 3.9e-06 56.6 34 85.3
Sopen03g031890 Solanum pennellii HOM05D000922 ORTHO05D008200 3.9e-06 56.6 32 78.1
AUR62004888 Chenopodium quinoa HOM05D000200 ORTHO05D000262 5.1e-06 56.2 88 50.0
Oeu028667.2 Olea europaea HOM05D000200 ORTHO05D000262 5.1e-06 56.2 34 88.2
Os01g0271000 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D008200 5.1e-06 56.2 36 80.6
Ah.06g191990 Amaranthus hybridus HOM05D000200 ORTHO05D000262 6.7e-06 55.8 33 90.9
CANSAT80G0818 Cannabis sativa HOM05D000922 ORTHO05D008200 8.8e-06 55.5 33 81.8


User provided reference genes

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