Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G11034 Striga asiatica HOM05D003774 ORTHO05D009174 3.9e-165 584.7 296 100.0
MSTRG.22470 Avicennia marina HOM05D003774 ORTHO05D009174 2.6e-84 316.2 272 61.4
SalBow6G0569 Salvia bowleyana HOM05D003774 ORTHO05D009174 2.4e-82 309.7 319 58.6
SalBow6G5656 Salvia bowleyana HOM05D003774 ORTHO05D009174 2.7e-81 306.2 319 58.3
Oeu013896.2 Olea europaea HOM05D003774 ORTHO05D009174 7.9e-81 304.7 322 54.7
Migut.N03372 Erythranthe guttata HOM05D003774 ORTHO05D009174 3.9e-80 302.4 295 56.3
Manes.02G198600 Manihot esculenta HOM05D003774 ORTHO05D009174 1.7e-75 287.0 255 58.0
Ciclev10001943m.g Citrus clementina HOM05D003774 ORTHO05D009174 1.4e-74 283.9 259 54.8
Prupe.1G555600 Prunus persica HOM05D003774 ORTHO05D009174 2.4e-74 283.1 290 53.8
Atru.chr13.2367 Acer truncatum HOM05D003774 ORTHO05D009174 3.2e-74 282.7 277 53.8
Lsat_1_v5_gn_1_25820 Lactuca sativa HOM05D003774 ORTHO05D009174 7.1e-74 281.6 280 52.5
TAR624G0812 Trochodendron aralioides HOM05D003774 ORTHO05D009174 1.6e-73 280.4 318 48.7
CANSAT25G3020 Cannabis sativa HOM05D003774 ORTHO05D009174 2.1e-73 280.0 248 56.0
ECA247G3883 Erigeron canadensis HOM05D003774 ORTHO05D009174 3.5e-73 279.3 312 50.3
Cc10_g09600 Coffea canephora HOM05D003774 ORTHO05D009174 1.0e-72 277.7 256 58.2
PGR042G3286 Punica granatum HOM05D003774 ORTHO05D009174 5.1e-72 275.4 300 51.3
MD08G1217800 Malus domestica HOM05D003774 ORTHO05D009174 6.7e-72 275.0 255 55.3
PGSC0003DMG402025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 6.7e-72 275.0 265 58.1
RcHm_v2.0_Chr7g0227151 Rosa chinensis HOM05D003774 ORTHO05D009174 8.7e-72 274.6 276 52.5
FAN18G3876 Fragaria x ananassa HOM05D003402 ORTHO05D003939 1.1e-71 274.2 252 55.6
FAN22G1282 Fragaria x ananassa HOM05D003774 ORTHO05D009174 3.3e-71 272.7 289 51.9
HanXRQChr02g0036581 Helianthus annuus HOM05D003774 ORTHO05D009174 4.3e-71 272.3 263 53.6
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 4.3e-71 272.3 286 52.4
Cfa012969 Carpinus fangiana HOM05D003774 ORTHO05D009174 5.6e-71 271.9 255 54.9
FvH4_5g31620 Fragaria vesca HOM05D003774 ORTHO05D009174 5.6e-71 271.9 252 55.2
DCAR_003529 Daucus carota HOM05D003774 ORTHO05D009174 7.4e-71 271.6 252 55.6
GSVIVG01026084001 Vitis vinifera HOM05D003774 ORTHO05D009174 7.4e-71 271.6 302 48.0
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 9.6e-71 271.2 263 56.7
Sopen11g022610 Solanum pennellii HOM05D003774 ORTHO05D009174 9.6e-71 271.2 265 56.6
Actinidia29410 Actinidia chinensis HOM05D003774 ORTHO05D009174 1.3e-70 270.8 288 51.4
Thecc.08G192500 Theobroma cacao HOM05D003774 ORTHO05D009174 1.6e-70 270.4 251 55.0
QL02p014374 Quercus lobata HOM05D003774 ORTHO05D009174 2.1e-70 270.0 251 56.2
Nitab4.5_0005616g0010 Nicotiana tabacum HOM05D003774 ORTHO05D009174 4.8e-70 268.9 263 55.5
AUR62023544 Chenopodium quinoa HOM05D003774 ORTHO05D009174 6.2e-70 268.5 259 52.1
Sabra13G0091200 Salix brachista HOM05D003774 ORTHO05D009174 6.2e-70 268.5 288 50.7
Rhsim11G0052900 Rhododendron simsii HOM05D003774 ORTHO05D009174 2.4e-69 266.5 280 51.1
CiPaw.07G235700 Carya illinoinensis HOM05D003774 ORTHO05D009174 3.1e-69 266.2 260 54.2
Potri.019G079000 Populus trichocarpa HOM05D003774 ORTHO05D009174 1.2e-68 264.2 285 50.2
Solyc11g027840.2 Solanum lycopersicum HOM05D003774 ORTHO05D009174 1.2e-68 264.2 260 56.2
PSO170G6059 Papaver somniferum HOM05D003774 ORTHO05D009174 1.5e-68 263.8 267 52.1
COL.COLO4_24651 Corchorus olitorius HOM05D003774 ORTHO05D009174 2.0e-68 263.5 275 50.9
AUR62004600 Chenopodium quinoa HOM05D003774 ORTHO05D009174 1.3e-67 260.8 247 53.4
Gohir.D13G122800 Gossypium hirsutum HOM05D003774 ORTHO05D009174 1.3e-67 260.8 295 52.2
Gorai.013G137800 Gossypium raimondii HOM05D003774 ORTHO05D009174 1.3e-67 260.8 260 55.4
MBI09_g10676_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D009174 1.3e-67 260.8 252 52.8
Gohir.A13G119000 Gossypium hirsutum HOM05D003774 ORTHO05D009174 1.7e-67 260.4 260 55.4
EL10Ac1g00136 Beta vulgaris HOM05D003774 ORTHO05D009174 3.8e-67 259.2 250 54.8
CARHR034180 Cardamine hirsuta HOM05D003774 ORTHO05D009174 4.9e-67 258.8 238 54.6
AT1G35420 Arabidopsis thaliana HOM05D003774 ORTHO05D009174 1.1e-66 257.7 238 53.4
Eucgr.F02990 Eucalyptus grandis HOM05D003774 ORTHO05D009174 1.1e-66 257.7 241 54.8
BcaB07g33408 Brassica carinata HOM05D003774 ORTHO05D009174 1.4e-66 257.3 238 52.5
THA.LOC104816521 Tarenaya hassleriana HOM05D003774 ORTHO05D009174 1.4e-66 257.3 296 48.0
AL1G50230 Arabidopsis lyrata HOM05D003774 ORTHO05D009174 3.2e-66 256.1 270 48.5
Aa31LG6G8720 Aethionema arabicum HOM05D003774 ORTHO05D009174 7.1e-66 255.0 246 54.5
PSO017G5271 Papaver somniferum HOM05D003774 ORTHO05D009174 9.3e-66 254.6 260 51.5
Glyma.06G325100 Glycine max HOM05D003774 ORTHO05D009174 1.2e-65 254.2 252 51.6
Aqoxy5G02648 Aquilegia oxysepala HOM05D003774 ORTHO05D009174 4.6e-65 252.3 270 49.6
VMungo1080G0925 Vigna mungo HOM05D003774 ORTHO05D009174 7.9e-65 251.5 250 50.0
Phvul.005G000200 Phaseolus vulgaris HOM05D003774 ORTHO05D009174 1.0e-64 251.1 256 49.6
A09p31810 Brassica napus HOM05D003774 ORTHO05D009174 1.8e-64 250.4 242 51.2
ClCG08G000170 Citrullus lanatus HOM05D003774 ORTHO05D009174 1.8e-64 250.4 251 51.4
Carub.0001s3302 Capsella rubella HOM05D003774 ORTHO05D009174 2.3e-64 250.0 285 46.7
BcaNung06721 Brassica carinata HOM05D003774 ORTHO05D009174 3.0e-64 249.6 239 51.9
Sp1g30140 Schrenkiella parvula HOM05D003774 ORTHO05D009174 3.9e-64 249.2 242 51.7
BraA09t38720Z Brassica rapa HOM05D003774 ORTHO05D009174 8.7e-64 248.1 238 51.7
Ah.05g178580 Amaranthus hybridus HOM05D003774 ORTHO05D009174 1.1e-63 247.7 311 45.7
Nn1g08406 Nelumbo nucifera HOM05D003774 ORTHO05D009174 1.1e-63 247.7 252 49.6
Lj3g0005610 Lotus japonicus HOM05D003774 ORTHO05D009174 2.5e-63 246.5 251 49.0
C06p11130 Brassica napus HOM05D003774 ORTHO05D009174 1.3e-62 244.2 242 51.2
BcaC08g43731 Brassica carinata HOM05D003774 ORTHO05D009174 1.6e-62 243.8 242 51.2
BolC6t36236H Brassica oleracea HOM05D003774 ORTHO05D009174 1.6e-62 243.8 242 51.2
TPR.G25492 Trifolium pratense HOM05D003774 ORTHO05D009174 4.8e-62 242.3 251 48.2
Thhalv10001825m.g Eutrema salsugineum HOM05D003774 ORTHO05D009174 8.2e-62 241.5 311 43.7
ATR0320G028 Amborella trichopoda HOM05D003774 ORTHO05D009174 1.5e-60 237.3 250 48.4
Medtr3g005060 Medicago truncatula HOM05D003774 ORTHO05D009174 2.6e-60 236.5 251 47.4
Psat1g003280 Pisum sativum HOM05D003774 ORTHO05D009174 7.6e-60 235.0 287 44.3
CsaV3_5G040550 Cucumis sativus L. HOM05D003774 ORTHO05D009174 8.5e-59 231.5 235 49.4
MELO3C022228.2 Cucumis melo HOM05D003774 ORTHO05D009174 1.1e-58 231.1 252 46.4
Haze_21313 Corylus avellana HOM05D003774 ORTHO05D009174 1.9e-58 230.3 256 50.8
Zm00001eb348780 Zea mays HOM05D003774 ORTHO05D009174 5.5e-58 228.8 253 47.8
HPP92_011955 Vanilla planifolia HOM05D003774 ORTHO05D009174 2.3e-56 223.4 247 47.0
HPP92_011935 Vanilla planifolia HOM05D003774 ORTHO05D009174 6.7e-56 221.9 300 42.7
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 1.1e-55 221.1 254 44.9
Duzib211G0171 Durio zibethinus HOM05D003774 ORTHO05D009174 8.5e-51 204.9 275 42.5
Mapoly0002s0135 Marchantia polymorpha HOM05D003774 ORTHO05D009174 3.6e-49 199.5 245 41.6
CSS0003364 Camellia sinensis var. sinensis HOM05D003774 ORTHO05D009174 3.0e-48 196.4 252 49.2
PGSC0003DMG401025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 6.7e-48 195.3 140 66.4
Cpa.g.sc66.2 Carica papaya HOM05D003774 ORTHO05D009174 1.7e-46 190.7 142 59.2
CSS0038880 Camellia sinensis var. sinensis HOM05D003774 ORTHO05D009174 2.0e-44 183.7 199 52.8
FAN04G1660 Fragaria x ananassa HOM05D003774 ORTHO05D009174 5.5e-42 175.6 130 63.1
Glyma.04G256500 Glycine max HOM05D003774 ORTHO05D009174 7.9e-41 171.8 251 40.2
CSS0038100 Camellia sinensis var. sinensis HOM05D003774 ORTHO05D009174 1.0e-40 171.4 234 46.6
AagrBONN_evm.TU.Sc2ySwM_228.1693 Anthoceros agrestis HOM05D003774 ORTHO05D009174 5.2e-40 169.1 253 36.4
CDE02G0175 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 1.5e-39 167.5 254 38.6
Dinv19855 Davidia involucrata HOM05D003774 ORTHO05D009174 8.2e-38 161.8 185 51.9
SEGI_39255 Sequoiadendron giganteum HOM05D003774 ORTHO05D009174 7.7e-36 155.2 133 51.1
Sc09g0006790 Simmondsia chinensis HOM05D003774 ORTHO05D009174 3.6e-33 146.4 155 51.6
Pp3c10_21530 Physcomitrium patens HOM05D003774 ORTHO05D009174 1.7e-30 137.5 262 37.4
CDE08G1139 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 3.1e-21 106.7 82 63.4
Potri.013G105634 Populus trichocarpa HOM05D003774 ORTHO05D009174 2.0e-20 104.0 234 34.2
TAR636G2860 Trochodendron aralioides HOM05D003774 ORTHO05D009174 5.5e-18 95.9 84 51.2
SEGI_30677 Sequoiadendron giganteum HOM05D003774 ORTHO05D009174 7.2e-18 95.5 87 58.6
SEGI_34335 Sequoiadendron giganteum HOM05D003774 ORTHO05D009174 7.2e-18 95.5 87 58.6
Os05g0429500 Oryza sativa ssp. japonica HOM05D003774 ORTHO05D009174 7.0e-13 79.0 42 83.3
CBR_g29932 Chara braunii HOM05D003774 ORTHO05D009174 4.3e-10 69.7 211 26.1
Pp3c17_9260 Physcomitrium patens HOM05D003774 ORTHO05D009174 5.6e-10 69.3 65 49.2
Pp3c14_5820 Physcomitrium patens HOM05D003774 ORTHO05D009174 9.5e-10 68.6 66 48.5
Ah.07g204040 Amaranthus hybridus HOM05D001214 ORTHO05D001029 3.6e-09 66.6 244 24.2
Ah.07g204010 Amaranthus hybridus HOM05D001214 ORTHO05D001029 6.1e-09 65.9 211 27.5
AUR62002636 Chenopodium quinoa HOM05D001214 ORTHO05D001029 6.1e-09 65.9 263 24.3
DCAR_012171 Daucus carota HOM05D001214 ORTHO05D001029 1.0e-08 65.1 242 26.0
PGSC0003DMG400003793 Solanum tuberosum HOM05D001214 ORTHO05D001029 1.0e-08 65.1 207 25.6
Medtr1g052490 Medicago truncatula HOM05D003774 ORTHO05D009174 1.4e-08 64.7 63 46.0
CSS0047107 Camellia sinensis var. sinensis HOM05D001214 ORTHO05D001029 4.0e-08 63.2 200 25.5
Nitab4.5_0010484g0010 Nicotiana tabacum HOM05D001214 ORTHO05D001029 5.2e-08 62.8 184 27.2
Eucgr.B01151 Eucalyptus grandis HOM05D001214 ORTHO05D001029 1.2e-07 61.6 246 26.4
Solyc09g072900.4 Solanum lycopersicum HOM05D001214 ORTHO05D001029 1.2e-07 61.6 207 24.6
Sopen09g028730 Solanum pennellii HOM05D001214 ORTHO05D001029 1.2e-07 61.6 207 24.6
Lj3C760G9 Lonicera japonica HOM05D001214 ORTHO05D001029 1.5e-07 61.2 196 26.5
Migut.N00145 Erythranthe guttata HOM05D001214 ORTHO05D001029 2.6e-07 60.5 196 26.0
Manes.03G185900 Manihot esculenta HOM05D001214 ORTHO05D001029 2.6e-07 60.5 201 24.4
AUR62002637 Chenopodium quinoa HOM05D001214 ORTHO05D001029 3.4e-07 60.1 200 28.0
HanXRQChr10g0310281 Helianthus annuus HOM05D001214 ORTHO05D001029 3.4e-07 60.1 194 25.8
Migut.N02152 Erythranthe guttata HOM05D001214 ORTHO05D001029 4.4e-07 59.7 202 26.2
SalBow2G0261 Salvia bowleyana HOM05D001214 ORTHO05D001029 5.7e-07 59.3 201 26.9
HanXRQChr10g0310251 Helianthus annuus HOM05D001214 ORTHO05D001029 7.5e-07 58.9 194 26.3
Nitab4.5_0000732g0120 Nicotiana tabacum HOM05D001214 ORTHO05D001029 7.5e-07 58.9 199 27.1
DCAR_018403 Daucus carota HOM05D001214 ORTHO05D001029 9.8e-07 58.5 221 24.9
PSO675G1247 Papaver somniferum HOM05D001214 ORTHO05D001029 9.8e-07 58.5 199 28.6
SGA_v2.0_scaffold172G39036 Striga asiatica HOM05D001214 ORTHO05D001029 1.3e-06 58.2 204 24.5
Lalb_Chr15g0087301 Lupinus albus HOM05D001214 ORTHO05D001029 2.2e-06 57.4 202 24.3
Psat4g030800 Pisum sativum HOM05D001214 ORTHO05D001029 2.2e-06 57.4 208 23.1
GSVIVG01011090001 Vitis vinifera HOM05D001214 ORTHO05D001029 2.2e-06 57.4 196 25.5
Peaxi162Scf00095g00921 Petunia axillaris HOM05D001214 ORTHO05D001029 3.7e-06 56.6 240 24.6
ATR0626G380 Amborella trichopoda HOM05D001214 ORTHO05D001029 4.9e-06 56.2 242 23.1
MSTRG.10021 Avicennia marina HOM05D001214 ORTHO05D001029 4.9e-06 56.2 198 24.7
MSTRG.12571 Avicennia marina HOM05D001214 ORTHO05D001029 4.9e-06 56.2 204 25.0
Nn3g17684 Nelumbo nucifera HOM05D001214 ORTHO05D001029 4.9e-06 56.2 208 24.5
Sopen09g026380 Solanum pennellii HOM05D001214 ORTHO05D001029 4.9e-06 56.2 207 23.7
vmacro14939 Vaccinium macrocarpon HOM05D001214 ORTHO05D001029 4.9e-06 56.2 207 24.2
THA.LOC104808665 Tarenaya hassleriana HOM05D001214 ORTHO05D001029 6.4e-06 55.8 201 24.9
RcHm_v2.0_Chr6g0291631 Rosa chinensis HOM05D001214 ORTHO05D001029 8.3e-06 55.5 207 24.2


User provided reference genes

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