Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 6.4e-79 297.4 150 100.0
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 2.1e-66 255.8 150 83.3
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 4.7e-66 254.6 161 81.4
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 1.3e-63 246.5 150 80.7
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 1.9e-62 242.7 150 82.0
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 6.2e-58 227.6 150 73.3
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 1.4e-57 226.5 149 75.2
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 1.8e-57 226.1 148 74.3
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 2.9e-55 218.8 150 72.0
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 8.4e-55 217.2 149 69.8
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 1.1e-54 216.9 150 70.0
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 2.4e-54 215.7 150 69.3
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 5.4e-54 214.5 150 68.7
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 2.3e-52 209.1 150 68.7
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 3.0e-52 208.8 150 67.3
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 3.9e-52 208.4 150 66.0
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 3.9e-52 208.4 148 66.9
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 3.9e-52 208.4 150 65.3
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 3.9e-52 208.4 150 65.3
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 5.1e-52 208.0 150 66.7
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 8.6e-52 207.2 150 68.0
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 8.6e-52 207.2 150 65.3
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 1.1e-51 206.8 151 64.9
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 1.1e-51 206.8 150 67.3
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 1.1e-51 206.8 150 67.3
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.5e-51 206.5 150 67.3
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.9e-51 206.1 150 65.3
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 1.9e-51 206.1 150 67.3
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 2.5e-51 205.7 150 67.3
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 1.6e-50 203.0 147 66.7
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 2.1e-50 202.6 150 64.7
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 2.8e-50 202.2 150 64.0
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 3.6e-50 201.8 150 66.0
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 4.7e-50 201.4 147 65.3
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 4.7e-50 201.4 147 65.3
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 4.7e-50 201.4 147 65.3
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 4.7e-50 201.4 147 66.7
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 6.2e-50 201.1 150 64.7
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 8.1e-50 200.7 149 64.4
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 1.1e-49 200.3 150 64.7
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 1.1e-49 200.3 147 65.3
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 1.8e-49 199.5 150 64.7
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 2.4e-49 199.1 150 64.0
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 6.9e-49 197.6 150 63.3
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 6.9e-49 197.6 148 63.5
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 9.0e-49 197.2 147 63.9
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 9.0e-49 197.2 150 63.3
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 1.2e-48 196.8 150 64.0
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 1.2e-48 196.8 150 62.0
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 1.5e-48 196.4 147 62.6
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 2.0e-48 196.1 149 63.1
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 2.0e-48 196.1 148 63.5
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 2.6e-48 195.7 146 63.0
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 2.6e-48 195.7 150 64.0
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 3.4e-48 195.3 150 66.7
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 7.6e-48 194.1 148 63.5
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 9.9e-48 193.7 149 61.1
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 9.9e-48 193.7 222 48.6
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 2.9e-47 192.2 146 61.6
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 3.8e-47 191.8 150 59.3
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.8e-47 191.8 150 60.0
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 3.8e-47 191.8 150 60.0
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 3.8e-47 191.8 150 59.3
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 3.8e-47 191.8 147 62.6
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 4.9e-47 191.4 150 59.3
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 4.9e-47 191.4 150 62.0
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 6.4e-47 191.0 147 62.6
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 6.4e-47 191.0 171 59.6
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 8.4e-47 190.7 150 59.3
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 8.4e-47 190.7 150 58.7
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 8.4e-47 190.7 150 58.7
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 8.4e-47 190.7 150 58.7
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 8.4e-47 190.7 150 60.0
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 1.1e-46 190.3 150 58.7
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.1e-46 190.3 150 60.0
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 1.9e-46 189.5 150 58.7
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 1.9e-46 189.5 143 64.3
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 1.9e-46 189.5 149 62.4
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 2.4e-46 189.1 150 58.7
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 2.4e-46 189.1 146 61.6
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 3.2e-46 188.7 149 61.7
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 4.2e-46 188.3 150 59.3
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 4.2e-46 188.3 147 60.5
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 9.3e-46 187.2 150 59.3
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 9.3e-46 187.2 147 62.6
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 1.6e-45 186.4 149 61.1
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 2.7e-45 185.7 150 57.3
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.5e-45 185.3 147 57.8
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 6.0e-45 184.5 147 59.2
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 1.3e-44 183.3 143 61.5
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.3e-44 183.3 143 61.5
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.3e-44 183.3 143 61.5
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.3e-44 183.3 143 61.5
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 1.3e-44 183.3 149 60.4
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 1.7e-44 183.0 149 59.7
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.3e-44 182.6 145 60.7
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.3e-44 182.6 145 60.7
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 3.0e-44 182.2 157 56.1
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 3.9e-44 181.8 147 61.2
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.9e-44 181.8 143 60.8
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 3.9e-44 181.8 149 57.7
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 3.9e-44 181.8 149 60.4
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 5.1e-44 181.4 162 54.3
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 6.6e-44 181.0 149 58.4
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.5e-43 179.9 147 55.8
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 1.5e-43 179.9 135 63.7
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 1.5e-43 179.9 149 57.7
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 1.9e-43 179.5 140 59.3
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 3.3e-43 178.7 152 57.2
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 4.3e-43 178.3 149 57.7
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 5.6e-43 177.9 160 53.8
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 2.8e-42 175.6 149 57.0
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 3.6e-42 175.3 150 54.7
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 4.8e-42 174.9 161 53.4
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 8.1e-42 174.1 147 61.2
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 1.1e-41 173.7 149 56.4
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 2.4e-41 172.6 149 57.0
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 4.0e-41 171.8 139 56.8
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 5.3e-41 171.4 139 59.0
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 9.0e-41 170.6 181 49.2
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 7.6e-40 167.5 143 56.6
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 1.7e-39 166.4 193 48.7
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 1.7e-39 166.4 147 56.5
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.9e-39 165.6 144 53.5
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.1e-38 163.7 144 53.5
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.1e-38 163.7 144 54.2
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 2.4e-38 162.5 144 52.8
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 3.5e-37 158.7 150 50.7
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 3.5e-37 158.7 150 50.7
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 4.6e-37 158.3 143 52.4
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 4.6e-37 158.3 143 52.4
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 4.6e-37 158.3 143 52.4
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 1.8e-36 156.4 143 51.7
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 1.1e-35 153.7 142 54.2
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 1.5e-35 153.3 144 50.7
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.5e-35 153.3 143 51.0
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 1.5e-35 153.3 108 67.6
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 1.5e-35 153.3 108 67.6
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 1.3e-34 150.2 149 52.3
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 7.6e-32 141.0 89 76.4
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 1.3e-31 140.2 128 57.8
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 1.3e-31 140.2 128 57.8
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.7e-31 139.8 89 70.8
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 2.2e-31 139.4 149 50.3
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 6.4e-31 137.9 133 54.9
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 8.4e-31 137.5 89 73.0
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 4.2e-30 135.2 151 49.0
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 7.1e-30 134.4 122 51.6
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 1.2e-29 133.7 89 67.4
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 2.7e-29 132.5 107 54.2
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 1.1e-27 127.1 89 65.2
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 2.4e-25 119.4 106 52.8
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 4.0e-25 118.6 145 42.8
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 2.2e-23 112.8 84 58.3
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 3.8e-23 112.1 149 45.0
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 1.1e-22 110.5 149 38.9
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 4.2e-22 108.6 137 40.1
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 7.1e-22 107.8 82 59.8
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 1.8e-20 103.2 135 33.3
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 8.2e-18 94.4 138 31.9
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 4.1e-17 92.0 103 43.7
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 6.9e-17 91.3 85 48.2
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 2.2e-15 86.3 149 30.2
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 1.1e-14 84.0 72 59.7
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.6e-13 80.1 107 32.7
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 2.1e-13 79.7 149 32.9
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 3.9e-12 75.5 87 46.0
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 3.9e-12 75.5 52 65.4
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 4.3e-11 72.0 133 27.8
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 1.1e-09 67.4 101 35.6
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 2.4e-09 66.2 138 25.4
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 4.1e-09 65.5 44 63.6
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 4.5e-08 62.0 81 43.2
Cre12.g551900 Chlamydomonas reinhardtii HOM05D003922 ORTHO05D004492 8.5e-07 57.8 132 23.5


User provided reference genes

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