Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 1.1e-153 546.6 285 100.0
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 6.7e-61 238.4 256 54.7
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 4.3e-52 209.1 226 54.0
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 1.4e-50 204.1 256 48.4
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 3.1e-50 203.0 242 50.0
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 1.0e-48 198.0 242 49.2
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 1.7e-48 197.2 215 51.6
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 3.8e-48 196.1 224 48.7
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 1.1e-47 194.5 245 47.8
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 1.4e-47 194.1 223 50.7
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 3.2e-47 193.0 221 50.7
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 1.8e-45 187.2 247 47.0
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 1.9e-44 183.7 214 50.0
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 7.4e-44 181.8 227 46.7
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 9.7e-44 181.4 219 48.9
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 1.6e-43 180.6 223 47.1
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 2.2e-43 180.3 220 48.6
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 3.7e-43 179.5 213 48.4
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.4e-42 177.6 208 48.1
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 2.4e-42 176.8 214 48.1
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 2.4e-42 176.8 208 48.1
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.1e-42 176.4 208 48.1
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 4.1e-42 176.0 215 46.0
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 5.3e-42 175.6 213 47.9
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 6.9e-42 175.3 228 46.5
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 1.2e-41 174.5 245 44.5
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 2.6e-41 173.3 247 42.5
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 4.5e-41 172.6 217 46.5
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 5.9e-41 172.2 231 44.2
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 7.7e-41 171.8 208 46.6
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 7.7e-41 171.8 257 43.2
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 1.0e-40 171.4 213 46.5
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 2.9e-40 169.9 248 44.4
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 3.8e-40 169.5 277 41.9
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 5.0e-40 169.1 242 42.6
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 8.5e-40 168.3 242 43.0
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 1.1e-39 167.9 243 43.6
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 4.2e-39 166.0 231 42.9
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 5.5e-39 165.6 208 46.6
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 5.5e-39 165.6 202 46.0
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 9.4e-39 164.9 242 42.6
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 2.7e-38 163.3 212 46.7
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 3.6e-38 162.9 194 46.9
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 7.9e-38 161.8 210 43.8
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 3.0e-37 159.8 226 42.0
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 3.3e-36 156.4 264 40.2
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 4.8e-35 152.5 221 42.1
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 2.4e-34 150.2 205 42.0
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 4.1e-34 149.4 205 41.5
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 9.1e-34 148.3 209 44.5
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 1.5e-33 147.5 233 40.8
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 7.7e-33 145.2 232 41.4
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 1.3e-32 144.4 215 40.9
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 5.0e-32 142.5 243 39.5
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 7.2e-31 138.7 209 39.7
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.6e-30 136.3 234 39.7
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 7.9e-30 135.2 248 38.7
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 1.8e-29 134.0 182 42.9
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 3.9e-29 132.9 260 35.0
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.5e-28 131.0 215 37.7
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 3.3e-28 129.8 188 45.2
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 1.7e-27 127.5 283 33.9
Oeu021569.1 Olea europaea HOM05D003796 ORTHO05D004486 1.8e-26 124.0 123 56.1
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 5.3e-26 122.5 218 39.4
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 9.1e-26 121.7 206 38.8
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 1.2e-25 121.3 80 72.5
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 3.5e-25 119.8 80 73.8
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 2.2e-24 117.1 222 34.2
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 1.4e-23 114.4 215 33.5
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 1.9e-23 114.0 168 40.5
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 9.4e-23 111.7 216 34.7
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 2.1e-22 110.5 171 38.6
Sabra13G0104400 Salix brachista HOM05D003796 ORTHO05D004486 2.7e-22 110.2 100 58.0
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 6.1e-22 109.0 187 38.0
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 1.0e-21 108.2 181 39.8
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 3.3e-20 103.2 201 33.3
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 4.4e-20 102.8 188 34.6
QL93p1902_0792 Quercus lobata HOM05D003796 ORTHO05D004486 1.7e-19 100.9 78 59.0
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 6.3e-19 99.0 195 34.4
QL10p054570 Quercus lobata HOM05D003796 ORTHO05D004486 3.1e-18 96.7 78 56.4
QL10p054574 Quercus lobata HOM05D003796 ORTHO05D004486 2.0e-17 94.0 71 67.6
QL93p1902_0789 Quercus lobata HOM05D003796 ORTHO05D004486 2.0e-17 94.0 71 67.6
ClCG06G001080 Citrullus lanatus HOM05D003796 ORTHO05D004486 1.3e-16 91.3 201 32.3
FAN22G2021 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.3e-16 91.3 97 52.6
Nitab4.5_0000856g0240 Nicotiana tabacum HOM05D003796 ORTHO05D004486 2.2e-16 90.5 156 39.1
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 4.2e-15 86.3 178 33.7
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 5.5e-15 85.9 184 31.5
FAN07G1083 Fragaria x ananassa HOM05D003796 ORTHO05D004486 7.2e-15 85.5 97 50.5
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 2.7e-14 83.6 178 31.5
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 2.7e-14 83.6 184 31.0
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 2.7e-14 83.6 184 31.0
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 3.6e-14 83.2 210 29.5
FAN12G2909 Fragaria x ananassa HOM05D003796 ORTHO05D004486 4.7e-14 82.8 89 50.6
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 6.1e-14 82.4 179 29.1
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 6.1e-14 82.4 209 29.2
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 8.0e-14 82.0 179 29.6
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 1.8e-13 80.9 185 29.7
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 1.8e-13 80.9 206 27.2
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 1.8e-13 80.9 77 51.9
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 2.3e-13 80.5 183 31.7
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 4.0e-13 79.7 186 29.6
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 4.0e-13 79.7 266 28.2
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 4.0e-13 79.7 204 29.9
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 5.2e-13 79.3 204 28.4
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 6.8e-13 79.0 179 30.7
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 8.8e-13 78.6 179 29.1
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 8.8e-13 78.6 195 28.2
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 8.8e-13 78.6 175 30.3
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 8.8e-13 78.6 180 30.0
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 1.2e-12 78.2 256 25.8
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 2.6e-12 77.0 178 29.8
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 2.6e-12 77.0 180 29.4
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 2.6e-12 77.0 177 29.4
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 2.6e-12 77.0 174 27.0
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 4.4e-12 76.3 208 29.3
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 4.4e-12 76.3 212 28.3
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 4.4e-12 76.3 212 28.3
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 4.4e-12 76.3 207 30.4
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 5.7e-12 75.9 226 27.9
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 5.7e-12 75.9 207 29.5
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 7.5e-12 75.5 230 26.5
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 1.3e-11 74.7 195 27.7
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 1.3e-11 74.7 231 27.7
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 1.3e-11 74.7 205 26.8
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 1.7e-11 74.3 221 30.3
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 1.7e-11 74.3 209 28.2
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 1.7e-11 74.3 215 29.3
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 2.8e-11 73.6 225 26.7
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 2.8e-11 73.6 171 29.8
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 3.7e-11 73.2 206 29.1
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 3.7e-11 73.2 176 29.0
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 4.8e-11 72.8 185 30.8
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 6.3e-11 72.4 254 28.3
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 6.3e-11 72.4 196 27.6
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 8.3e-11 72.0 197 26.9
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 8.3e-11 72.0 177 28.8
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 1.1e-10 71.6 209 26.8
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 1.1e-10 71.6 223 26.0
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 1.1e-10 71.6 232 26.7
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 1.4e-10 71.2 174 27.0
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 1.4e-10 71.2 233 25.3
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.8e-10 70.9 258 29.5
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 1.8e-10 70.9 193 28.0
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 2.4e-10 70.5 209 27.3
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 2.4e-10 70.5 180 26.7
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 3.1e-10 70.1 184 27.2
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 4.1e-10 69.7 198 27.8
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 5.3e-10 69.3 209 26.8
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 9.1e-10 68.6 180 27.8
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 1.6e-09 67.8 225 26.2
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 2.0e-09 67.4 203 28.1
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 2.0e-09 67.4 243 25.9
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 3.5e-09 66.6 172 26.7
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 3.5e-09 66.6 173 26.6
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 4.5e-09 66.2 210 29.5
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 4.5e-09 66.2 186 27.4
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 2.2e-08 63.9 74 47.3
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 2.9e-08 63.5 159 25.8
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 5.0e-08 62.8 260 26.5
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 6.5e-08 62.4 171 27.5
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 6.5e-08 62.4 87 39.1
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.1e-07 61.6 213 23.9
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 1.1e-07 61.6 184 27.2
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 1.9e-07 60.8 75 41.3
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 5.5e-07 59.3 182 26.4
SGA_v2.0_scaffold39G15361 Striga asiatica HOM05D003796 ORTHO05D004486 3.6e-06 56.6 37 70.3


User provided reference genes

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