Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G10991 Striga asiatica HOM05D004512 ORTHO05D005355 4.0e-59 231.1 106 100.0
SGA_v2.0_scaffold19G08815 Striga asiatica HOM05D004512 ORTHO05D005355 1.6e-55 219.2 107 95.3
MSTRG.22945 Avicennia marina HOM05D004512 ORTHO05D005355 3.2e-53 211.5 106 92.5
SalBow5G1005 Salvia bowleyana HOM05D004512 ORTHO05D005355 4.0e-51 204.5 106 85.8
Migut.I00347 Erythranthe guttata HOM05D004512 ORTHO05D005355 3.7e-49 198.0 105 84.8
Oeu046994.1 Olea europaea HOM05D004512 ORTHO05D005355 1.1e-48 196.4 105 85.7
Cc04_g07140 Coffea canephora HOM05D004512 ORTHO05D005355 4.5e-47 191.0 102 88.2
unitig_26.g9674 Utricularia gibba HOM05D004512 ORTHO05D005355 1.7e-46 189.1 101 86.1
unitig_749.g13425 Utricularia gibba HOM05D004512 ORTHO05D005355 2.2e-46 188.7 101 86.1
Potri.015G054700 Populus trichocarpa HOM05D004512 ORTHO05D005355 1.1e-45 186.4 105 81.0
Prupe.5G221100 Prunus persica HOM05D004512 ORTHO05D005355 1.5e-45 186.0 102 79.4
Manes.05G137500 Manihot esculenta HOM05D004512 ORTHO05D005355 1.9e-45 185.7 102 81.4
CSS0004107 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 4.2e-45 184.5 102 81.4
Cfa019782 Carpinus fangiana HOM05D004512 ORTHO05D005355 4.2e-45 184.5 102 83.3
Haze_18669 Corylus avellana HOM05D004512 ORTHO05D005355 4.2e-45 184.5 102 83.3
Potri.012G056900 Populus trichocarpa HOM05D004512 ORTHO05D005355 5.5e-45 184.1 105 78.1
Manes.01G011800 Manihot esculenta HOM05D004512 ORTHO05D005355 2.8e-44 181.8 102 79.4
Sabra12G0040400 Salix brachista HOM05D004512 ORTHO05D005355 2.8e-44 181.8 105 78.1
MD06G1215900 Malus domestica HOM05D004512 ORTHO05D005355 3.6e-44 181.4 98 81.6
MD14G1226500 Malus domestica HOM05D004512 ORTHO05D005355 3.6e-44 181.4 98 81.6
AUR62029861 Chenopodium quinoa HOM05D004512 ORTHO05D005355 1.8e-43 179.1 102 79.4
THA.LOC104821841 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 1.8e-43 179.1 102 81.4
vmacro12793 Vaccinium macrocarpon HOM05D004512 ORTHO05D005355 1.8e-43 179.1 102 80.4
AL1G56000 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 2.3e-43 178.7 105 78.1
Gohir.A09G047600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 2.3e-43 178.7 104 79.8
Gohir.D09G048700 Gossypium hirsutum HOM05D004512 ORTHO05D005355 2.3e-43 178.7 104 79.8
THA.LOC104820396 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 3.0e-43 178.3 102 80.4
TAR374G1478 Trochodendron aralioides HOM05D004512 ORTHO05D005355 4.0e-43 177.9 102 78.4
AT1G49140 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 5.2e-43 177.6 105 78.1
AT3G18410 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 5.2e-43 177.6 102 79.4
Carub.0001s3830 Capsella rubella HOM05D004512 ORTHO05D005355 5.2e-43 177.6 105 78.1
Carub.0003s1819 Capsella rubella HOM05D004512 ORTHO05D005355 5.2e-43 177.6 102 79.4
Thhalv10011884m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 5.2e-43 177.6 102 80.4
CARHR039120 Cardamine hirsuta HOM05D004512 ORTHO05D005355 6.8e-43 177.2 102 79.4
Hma1.2p1_0653F.1_g196320 Hydrangea macrophylla HOM05D004512 ORTHO05D005355 6.8e-43 177.2 106 78.3
Rhsim12G0143400 Rhododendron simsii HOM05D004512 ORTHO05D005355 6.8e-43 177.2 105 77.1
Thhalv10022379m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 8.8e-43 176.8 102 79.4
AUR62025859 Chenopodium quinoa HOM05D004512 ORTHO05D005355 1.2e-42 176.4 102 78.4
Gohir.D08G105800 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.2e-42 176.4 101 81.2
Gorai.004G113100 Gossypium raimondii HOM05D004512 ORTHO05D005355 1.2e-42 176.4 101 81.2
PGSC0003DMG400023110 Solanum tuberosum HOM05D004512 ORTHO05D005355 1.2e-42 176.4 100 82.0
Aa31LG10G4840 Aethionema arabicum HOM05D004512 ORTHO05D005355 1.5e-42 176.0 101 80.2
CiPaw.16G085900 Carya illinoinensis HOM05D004512 ORTHO05D005355 1.5e-42 176.0 102 79.4
Hund02392 Selenicereus undatus HOM05D004512 ORTHO05D005355 1.5e-42 176.0 101 81.2
Thecc.03G034700 Theobroma cacao HOM05D004512 ORTHO05D005355 1.5e-42 176.0 101 80.2
Sp3g16520 Schrenkiella parvula HOM05D004512 ORTHO05D005355 2.0e-42 175.6 104 76.0
AL3G31700 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 2.6e-42 175.3 102 78.4
Gohir.A08G094600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 2.6e-42 175.3 101 80.2
Lj2g0019547 Lotus japonicus HOM05D004512 ORTHO05D005355 2.6e-42 175.3 101 75.2
Nitab4.5_0000208g0260 Nicotiana tabacum HOM05D004512 ORTHO05D005355 2.6e-42 175.3 100 82.0
Aa31LG8G5240 Aethionema arabicum HOM05D004512 ORTHO05D005355 3.4e-42 174.9 101 78.2
CARHR093770 Cardamine hirsuta HOM05D004512 ORTHO05D005355 3.4e-42 174.9 102 78.4
Nitab4.5_0006638g0020 Nicotiana tabacum HOM05D004512 ORTHO05D005355 3.4e-42 174.9 100 81.0
BcaB04g20765 Brassica carinata HOM05D004512 ORTHO05D005355 4.4e-42 174.5 102 77.5
BraA01t03675Z Brassica rapa HOM05D004512 ORTHO05D005355 4.4e-42 174.5 102 77.5
MELO3C002086.2 Cucumis melo HOM05D004512 ORTHO05D005355 4.4e-42 174.5 101 80.2
CsaV3_1G006620 Cucumis sativus L. HOM05D004512 ORTHO05D005355 4.4e-42 174.5 101 80.2
Sopen12g018390 Solanum pennellii HOM05D004512 ORTHO05D005355 4.4e-42 174.5 100 81.0
BcaC01g03699 Brassica carinata HOM05D004512 ORTHO05D005355 5.7e-42 174.1 102 78.4
BcaC05g28630 Brassica carinata HOM05D004512 ORTHO05D005355 5.7e-42 174.1 104 77.9
BcaC09g48802 Brassica carinata HOM05D004512 ORTHO05D005355 5.7e-42 174.1 102 77.5
C01p45770 Brassica napus HOM05D004512 ORTHO05D005355 5.7e-42 174.1 102 77.5
C05p47340 Brassica napus HOM05D004512 ORTHO05D005355 5.7e-42 174.1 104 77.9
BolC1t04540H Brassica oleracea HOM05D004512 ORTHO05D005355 5.7e-42 174.1 102 77.5
BolC3t17241H Brassica oleracea HOM05D004512 ORTHO05D005355 5.7e-42 174.1 102 78.4
BolC5t33461H Brassica oleracea HOM05D004512 ORTHO05D005355 5.7e-42 174.1 104 77.9
CSS0044395 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 5.7e-42 174.1 101 78.2
CANSAT80G1137 Cannabis sativa HOM05D004512 ORTHO05D005355 5.7e-42 174.1 102 79.4
Sp1g36030 Schrenkiella parvula HOM05D004512 ORTHO05D005355 5.7e-42 174.1 102 77.5
Duzib205G0602 Durio zibethinus HOM05D004512 ORTHO05D005355 7.5e-42 173.7 101 79.2
Duzib205G1322 Durio zibethinus HOM05D004512 ORTHO05D005355 7.5e-42 173.7 101 79.2
Peaxi162Scf00634g00116 Petunia axillaris HOM05D004512 ORTHO05D005355 7.5e-42 173.7 105 78.1
TPR.G27937 Trifolium pratense HOM05D004512 ORTHO05D005355 7.5e-42 173.7 101 76.2
EL10Ac5g11436 Beta vulgaris HOM05D004512 ORTHO05D005355 9.8e-42 173.3 105 74.3
CANSAT80G2616 Cannabis sativa HOM05D004512 ORTHO05D005355 9.8e-42 173.3 100 80.0
RcHm_v2.0_Chr7g0185431 Rosa chinensis HOM05D004512 ORTHO05D005355 9.8e-42 173.3 105 74.3
CiPaw.15G130400 Carya illinoinensis HOM05D004512 ORTHO05D005355 1.3e-41 172.9 102 77.5
Ca_25495_v3 Cicer arietinum L. HOM05D004512 ORTHO05D005355 1.3e-41 172.9 101 76.2
A03p40660 Brassica napus HOM05D004512 ORTHO05D005355 1.7e-41 172.6 102 77.5
A05p31210 Brassica napus HOM05D004512 ORTHO05D005355 1.7e-41 172.6 102 78.4
BraA03t13222Z Brassica rapa HOM05D004512 ORTHO05D005355 1.7e-41 172.6 102 77.5
BraA05t21962Z Brassica rapa HOM05D004512 ORTHO05D005355 1.7e-41 172.6 102 78.4
PGR142G1335 Punica granatum HOM05D004512 ORTHO05D005355 2.2e-41 172.2 101 77.2
QL10p025263 Quercus lobata HOM05D004512 ORTHO05D005355 2.2e-41 172.2 100 78.0
BcaB04g18985 Brassica carinata HOM05D004512 ORTHO05D005355 2.8e-41 171.8 102 76.5
Sed0004773 Sechium edule HOM05D004512 ORTHO05D005355 2.8e-41 171.8 102 78.4
Aqoxy3G00301 Aquilegia oxysepala HOM05D004512 ORTHO05D005355 4.9e-41 171.0 104 76.0
Duzib068G0917 Durio zibethinus HOM05D004512 ORTHO05D005355 4.9e-41 171.0 101 77.2
Eucgr.K02221 Eucalyptus grandis HOM05D004512 ORTHO05D005355 4.9e-41 171.0 102 74.5
Sc12g0007720 Simmondsia chinensis HOM05D004512 ORTHO05D005355 8.3e-41 170.2 104 76.9
Glyma.09G184500 Glycine max HOM05D004512 ORTHO05D005355 1.1e-40 169.9 101 75.2
Lalb_Chr22g0353061 Lupinus albus HOM05D004512 ORTHO05D005355 1.1e-40 169.9 102 75.5
Gorai.006G061400 Gossypium raimondii HOM05D004512 ORTHO05D005355 1.4e-40 169.5 97 80.4
TWI81G1036 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 1.4e-40 169.5 102 73.5
Atru.chr9.839 Acer truncatum HOM05D004512 ORTHO05D005355 1.8e-40 169.1 104 75.0
VMungo0464G1721 Vigna mungo HOM05D004512 ORTHO05D005355 1.8e-40 169.1 101 75.2
FvH4_5g12140 Fragaria vesca HOM05D004512 ORTHO05D005355 2.4e-40 168.7 99 76.8
FAN04G1546 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.4e-40 168.7 99 76.8
FAN08G0397 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.4e-40 168.7 99 76.8
FAN13G2727 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.4e-40 168.7 99 76.8
FAN18G2044 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.4e-40 168.7 99 76.8
BcaB06g25886 Brassica carinata HOM05D004512 ORTHO05D005355 3.1e-40 168.3 102 76.5
CAN.G121.2 Capsicum annuum HOM05D004512 ORTHO05D005355 3.1e-40 168.3 97 80.4
CAN.G790.56 Capsicum annuum HOM05D004512 ORTHO05D005355 4.1e-40 167.9 97 79.4
Phvul.004G157200 Phaseolus vulgaris HOM05D004512 ORTHO05D005355 5.4e-40 167.5 101 73.3
arahy.Tifrunner.gnm1.ann1.HI5GUI Arachis hypogaea HOM05D004512 ORTHO05D005355 9.2e-40 166.8 97 77.3
arahy.Tifrunner.gnm1.ann1.K20T5Q Arachis hypogaea HOM05D004512 ORTHO05D005355 9.2e-40 166.8 97 77.3
A01p35940 Brassica napus HOM05D004512 ORTHO05D005355 9.2e-40 166.8 97 77.3
Cpa.g.sc3.515 Carica papaya HOM05D004512 ORTHO05D005355 9.2e-40 166.8 99 76.8
C03p49450 Brassica napus HOM05D004512 ORTHO05D005355 1.2e-39 166.4 97 78.4
FAN18G1297 Fragaria x ananassa HOM05D004512 ORTHO05D005355 1.2e-39 166.4 98 76.5
TAR371G0608 Trochodendron aralioides HOM05D004512 ORTHO05D005355 1.2e-39 166.4 96 79.2
DCAR_011353 Daucus carota HOM05D004512 ORTHO05D005355 2.0e-39 165.6 102 75.5
Glyma.07G091500 Glycine max HOM05D004512 ORTHO05D005355 2.0e-39 165.6 97 76.3
Solyc12g036790.2 Solanum lycopersicum HOM05D004512 ORTHO05D005355 3.5e-39 164.9 97 79.4
HPP92_020802 Vanilla planifolia HOM05D004512 ORTHO05D005355 3.5e-39 164.9 99 75.8
ClCG04G011140 Citrullus lanatus HOM05D004512 ORTHO05D005355 5.9e-39 164.1 104 73.1
Lalb_Chr24g0397761 Lupinus albus HOM05D004512 ORTHO05D005355 5.9e-39 164.1 102 73.5
Sed0021676 Sechium edule HOM05D004512 ORTHO05D005355 5.9e-39 164.1 97 79.4
Medtr6g084520 Medicago truncatula HOM05D004512 ORTHO05D005355 1.3e-38 162.9 97 75.3
CDE12G0498 Ceratophyllum demersum HOM05D004512 ORTHO05D005355 1.7e-38 162.5 106 72.6
ClCG00G005470 Citrullus lanatus HOM05D004512 ORTHO05D005355 1.7e-38 162.5 96 78.1
Psat1g037680 Pisum sativum HOM05D004512 ORTHO05D005355 1.7e-38 162.5 96 75.0
Ciclev10022984m.g Citrus clementina HOM05D004512 ORTHO05D005355 2.9e-38 161.8 102 72.5
DCAR_015141 Daucus carota HOM05D004512 ORTHO05D005355 3.8e-38 161.4 100 75.0
Lsat_1_v5_gn_8_144301 Lactuca sativa HOM05D004512 ORTHO05D005355 2.5e-37 158.7 99 75.8
PSO782G2824 Papaver somniferum HOM05D004512 ORTHO05D005355 2.5e-37 158.7 93 73.1
ECA233G5146 Erigeron canadensis HOM05D004512 ORTHO05D005355 3.3e-37 158.3 100 74.0
TWI60G0557 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 3.6e-36 154.8 94 73.4
Nitab4.5_0007985g0060 Nicotiana tabacum HOM05D004512 ORTHO05D005355 8.0e-36 153.7 84 81.0
HanXRQChr08g0226081 Helianthus annuus HOM05D004512 ORTHO05D005355 1.4e-35 152.9 98 72.4
ATR1125G038 Amborella trichopoda HOM05D004512 ORTHO05D005355 2.3e-35 152.1 85 81.2
Zm00001eb024750 Zea mays HOM05D004512 ORTHO05D005355 5.7e-34 147.5 86 76.7
Zm00001eb224900 Zea mays HOM05D004512 ORTHO05D005355 7.5e-34 147.1 86 76.7
COL.COLO4_05967 Corchorus olitorius HOM05D004512 ORTHO05D005355 1.9e-29 132.5 72 83.3
HanXRQChr16g0517341 Helianthus annuus HOM05D004512 ORTHO05D005355 3.3e-29 131.7 85 71.8
Nn3g17841 Nelumbo nucifera HOM05D004512 ORTHO05D005355 2.3e-27 125.6 68 80.9
AagrBONN_evm.TU.Sc2ySwM_117.17 Anthoceros agrestis HOM05D004512 ORTHO05D005355 2.9e-25 118.6 92 60.9
AagrBONN_evm.TU.Sc2ySwM_228.463 Anthoceros agrestis HOM05D004512 ORTHO05D005355 3.7e-25 118.2 92 60.9
Mapoly0004s0055 Marchantia polymorpha HOM05D004512 ORTHO05D005355 1.4e-24 116.3 81 66.7
CAN.G519.12 Capsicum annuum HOM05D004512 ORTHO05D005355 5.4e-24 114.4 72 75.0
MD14G1197200 Malus domestica HOM05D004512 ORTHO05D005355 5.4e-24 114.4 75 76.0
MD15G1306200 Malus domestica HOM05D004512 ORTHO05D005355 9.2e-24 113.6 75 70.7
Pp3c9_26150 Physcomitrium patens HOM05D004512 ORTHO05D005355 1.2e-23 113.2 82 63.4
CAN.G133.16 Capsicum annuum HOM05D004512 ORTHO05D005355 1.0e-22 110.2 69 76.8
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 5.0e-22 107.8 86 59.3
Prupe.1G218000 Prunus persica HOM05D004512 ORTHO05D005355 1.1e-21 106.7 102 52.9
SMO169G0039 Selaginella moellendorffii HOM05D004512 ORTHO05D005355 9.5e-21 103.6 75 57.3
Prupe.2G045100 Prunus persica HOM05D004512 ORTHO05D005355 1.4e-19 99.8 64 71.9
BcaB02g11300 Brassica carinata HOM05D004512 ORTHO05D005355 2.2e-17 92.4 70 62.9
Os10g0576000 Oryza sativa ssp. japonica HOM05D004512 ORTHO05D005355 2.4e-16 89.0 59 69.5
MCO12G018 Micromonas commoda HOM05D004512 ORTHO05D005355 7.1e-16 87.4 93 47.3
Duzib084G0409 Durio zibethinus HOM05D004512 ORTHO05D005355 6.2e-12 74.3 54 64.8
SEGI_01620 Sequoiadendron giganteum HOM05D004512 ORTHO05D005355 6.2e-12 74.3 50 70.0
PRCOL_00001312 Prasinoderma coloniale HOM05D004512 ORTHO05D005355 2.6e-10 68.9 74 44.6
Actinidia35087 Actinidia chinensis HOM05D004512 ORTHO05D005355 2.2e-09 65.9 37 83.8
Dinv09796 Davidia involucrata HOM05D004512 ORTHO05D005355 8.4e-09 63.9 37 81.1
Nitab4.5_0001194g0030 Nicotiana tabacum HOM05D004512 ORTHO05D005355 1.1e-08 63.5 61 55.7


User provided reference genes

Program Settings