Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 8.1e-227 790.0 390 100.0
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 3.6e-174 615.1 394 78.7
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 1.3e-171 606.7 389 79.4
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 3.8e-168 595.1 393 77.4
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 6.1e-166 587.8 389 75.8
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 1.0e-165 587.0 371 77.6
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 1.4e-165 586.6 350 82.3
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 5.2e-165 584.7 371 77.1
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 2.0e-164 582.8 350 82.9
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 2.6e-164 582.4 389 74.6
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 4.4e-164 581.6 350 82.0
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 9.8e-164 580.5 353 79.9
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 6.3e-163 577.8 350 80.0
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 6.3e-163 577.8 354 80.2
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 1.1e-162 577.0 389 74.6
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 1.1e-162 577.0 386 73.6
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 1.4e-162 576.6 372 77.2
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 1.8e-162 576.2 389 73.5
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 3.1e-162 575.5 353 79.9
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 5.4e-162 574.7 386 74.9
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 5.4e-162 574.7 386 74.9
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 5.4e-162 574.7 390 74.9
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 1.2e-161 573.5 389 73.8
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 1.2e-161 573.5 389 73.8
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 2.0e-161 572.8 390 72.8
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 2.0e-161 572.8 384 75.0
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 2.0e-161 572.8 390 73.6
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 3.5e-161 572.0 390 73.3
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 5.9e-161 571.2 367 77.1
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 1.0e-160 570.5 390 72.8
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 1.3e-160 570.1 350 79.1
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 1.7e-160 569.7 350 79.1
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 2.3e-160 569.3 353 77.6
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 2.3e-160 569.3 350 78.6
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 2.9e-160 568.9 391 72.4
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 2.9e-160 568.9 353 78.2
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 6.6e-160 567.8 387 72.6
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 6.6e-160 567.8 350 78.9
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 1.1e-159 567.0 391 72.1
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 1.5e-159 566.6 350 78.6
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 1.9e-159 566.2 390 72.3
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 1.9e-159 566.2 365 75.9
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 1.9e-159 566.2 389 72.5
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 1.9e-159 566.2 352 79.0
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 3.3e-159 565.5 350 80.0
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 4.2e-159 565.1 392 73.0
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 4.2e-159 565.1 375 74.4
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 5.5e-159 564.7 386 72.8
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 5.5e-159 564.7 358 78.2
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 7.2e-159 564.3 389 73.5
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 9.5e-159 563.9 352 77.3
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 1.2e-158 563.5 385 73.5
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 2.1e-158 562.8 378 74.1
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 2.1e-158 562.8 350 78.0
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 2.1e-158 562.8 365 75.3
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 2.8e-158 562.4 387 71.6
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 2.8e-158 562.4 393 71.2
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 4.7e-158 561.6 373 74.3
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 6.1e-158 561.2 369 74.5
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 1.0e-157 560.5 386 72.0
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 1.8e-157 559.7 350 77.1
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 3.0e-157 558.9 361 74.8
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 4.0e-157 558.5 350 76.3
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 5.2e-157 558.1 353 77.3
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 5.2e-157 558.1 350 76.9
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 5.2e-157 558.1 369 74.3
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 8.9e-157 557.4 376 72.3
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 1.2e-156 557.0 387 71.6
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 1.5e-156 556.6 350 77.1
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 2.6e-156 555.8 353 77.1
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.6e-156 555.8 393 71.0
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 3.4e-156 555.4 354 76.8
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 3.4e-156 555.4 350 76.9
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 3.4e-156 555.4 350 79.7
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 5.7e-156 554.7 351 78.1
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 5.7e-156 554.7 356 75.6
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 5.7e-156 554.7 403 69.2
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 7.5e-156 554.3 389 70.2
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 9.8e-156 553.9 358 76.5
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 1.3e-155 553.5 350 75.7
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 1.3e-155 553.5 384 70.8
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 1.7e-155 553.1 350 76.3
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 2.8e-155 552.4 350 75.7
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 2.8e-155 552.4 369 74.3
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 3.7e-155 552.0 367 75.2
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 3.7e-155 552.0 349 76.5
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 4.9e-155 551.6 350 75.7
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 6.3e-155 551.2 349 77.1
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 1.1e-154 550.4 350 75.7
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 1.1e-154 550.4 353 75.4
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 2.4e-154 549.3 350 75.1
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 7.0e-154 547.7 352 75.3
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 4.6e-153 545.0 350 76.3
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 1.0e-152 543.9 359 74.4
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 4.7e-150 535.0 354 73.7
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 4.9e-147 525.0 327 78.9
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 6.4e-147 524.6 443 62.3
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 5.4e-146 521.5 355 73.0
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 3.6e-142 508.8 367 69.8
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 1.8e-141 506.5 374 68.2
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 6.8e-141 504.6 453 59.4
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 2.9e-139 499.2 398 64.1
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 3.5e-137 492.3 354 66.9
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 3.9e-136 488.8 387 63.8
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 5.1e-136 488.4 354 66.4
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 5.6e-135 485.0 313 76.4
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 2.1e-134 483.0 357 68.1
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 1.0e-128 464.2 353 67.1
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 3.1e-125 452.6 279 80.6
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 8.4e-123 444.5 387 60.2
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 2.3e-120 436.4 351 62.1
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 4.9e-115 418.7 256 78.9
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 8.4e-115 417.9 257 77.8
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 6.0e-113 411.8 313 67.7
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 3.0e-112 409.5 313 67.1
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 5.1e-112 408.7 350 57.7
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 5.8e-108 395.2 394 56.1
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 3.2e-106 389.4 230 79.6
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 1.6e-105 387.1 237 79.7
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 7.4e-103 378.3 350 53.4
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 3.4e-100 369.4 315 61.6
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 2.7e-97 359.8 251 69.3
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 5.7e-95 352.1 373 53.4
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 3.7e-94 349.4 371 50.1
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 9.3e-90 334.7 354 49.7
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 2.8e-86 323.2 263 64.3
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 1.8e-85 320.5 199 80.4
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 6.9e-85 318.5 234 70.9
Actinidia11084 Actinidia chinensis HOM05D005273 ORTHO05D006195 6.1e-73 278.9 170 80.0
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 2.6e-68 263.5 219 63.9
SEGI_10566 Sequoiadendron giganteum HOM05D005273 ORTHO05D006195 4.5e-60 236.1 161 71.4
Peaxi162Scf00112g00113 Petunia axillaris HOM05D005273 ORTHO05D006195 5.0e-59 232.6 179 69.3
Oeu007130.1 Olea europaea HOM05D005273 ORTHO05D006195 1.0e-48 198.4 345 38.0
Peaxi162Scf00112g00110 Petunia axillaris HOM05D005273 ORTHO05D006195 5.0e-43 179.5 112 75.0
Lj1A718G26 Lonicera japonica HOM05D005273 ORTHO05D006195 1.9e-42 177.6 112 75.9
TPR.G7356 Trifolium pratense HOM05D005273 ORTHO05D006195 6.8e-40 169.1 94 81.9
EL10Ac9g21222 Beta vulgaris HOM05D005273 ORTHO05D006195 1.2e-39 168.3 236 47.9
Atru.chr6.2976 Acer truncatum HOM05D005273 ORTHO05D006195 5.9e-36 156.0 108 72.2
Cfa022577 Carpinus fangiana HOM05D005273 ORTHO05D006195 5.0e-35 152.9 366 32.0
Lj3g0005703 Lotus japonicus HOM05D002777 ORTHO05D001516 4.4e-23 113.2 81 71.6
AUR62036776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 3.2e-21 107.1 181 40.3
AUR62041872 Chenopodium quinoa HOM05D005273 ORTHO05D006195 6.6e-19 99.4 89 53.9
BcaNung01011 Brassica carinata HOM05D005273 ORTHO05D006195 3.3e-18 97.1 260 31.2
Lalb_Chr09g0333161 Lupinus albus HOM05D005273 ORTHO05D006195 1.8e-16 91.3 87 52.9
TPR.G31736 Trifolium pratense HOM05D005273 ORTHO05D006195 4.1e-13 80.1 45 82.2
Lj5A796T26 Lonicera japonica HOM05D005273 ORTHO05D006195 9.6e-10 68.9 45 66.7


User provided reference genes

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