Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G10960 Striga asiatica HOM05D003672 ORTHO05D004121 0.0e+00 1145.2 597 100.0
MSTRG.22965 Avicennia marina HOM05D003672 ORTHO05D004121 2.5e-118 430.3 684 45.2
Migut.D01656 Erythranthe guttata HOM05D003672 ORTHO05D004121 1.6e-101 374.4 679 43.4
Oeu061164.2 Olea europaea HOM05D003672 ORTHO05D004121 1.4e-92 344.7 711 39.0
Oeu044870.1 Olea europaea HOM05D003672 ORTHO05D004121 3.1e-92 343.6 681 40.7
Nitab4.5_0009401g0050 Nicotiana tabacum HOM05D003672 ORTHO05D004121 3.8e-90 336.7 657 40.2
SalBow7G3172 Salvia bowleyana HOM05D003672 ORTHO05D004121 2.4e-89 334.0 700 39.7
Cc00_g14840 Coffea canephora HOM05D003672 ORTHO05D004121 2.5e-86 323.9 666 38.4
Nitab4.5_0001485g0140 Nicotiana tabacum HOM05D003672 ORTHO05D004121 7.3e-86 322.4 646 38.9
Dinv22781 Davidia involucrata HOM05D003672 ORTHO05D004121 3.4e-83 313.5 717 36.8
Peaxi162Scf00201g00329 Petunia axillaris HOM05D003672 ORTHO05D004121 2.9e-82 310.5 655 38.9
Lj5C102T25 Lonicera japonica HOM05D003672 ORTHO05D004121 1.9e-81 307.8 664 37.0
Actinidia35037 Actinidia chinensis HOM05D003672 ORTHO05D004121 2.4e-81 307.4 684 38.3
Actinidia18990 Actinidia chinensis HOM05D003672 ORTHO05D004121 6.0e-80 302.8 689 37.6
Sopen03g034170 Solanum pennellii HOM05D003672 ORTHO05D004121 6.0e-80 302.8 657 36.5
Solyc03g115100.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 1.3e-79 301.6 656 36.0
Prupe.5G205200 Prunus persica HOM05D003672 ORTHO05D004121 6.9e-76 289.3 719 35.6
Rhsim12G0148200 Rhododendron simsii HOM05D003672 ORTHO05D004121 2.9e-74 283.9 675 36.3
Hma1.2p1_0060F.1_g033090 Hydrangea macrophylla HOM05D003672 ORTHO05D004121 4.2e-73 280.0 713 34.8
PGSC0003DMG400024637 Solanum tuberosum HOM05D003672 ORTHO05D004121 1.0e-71 275.4 658 34.8
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 2.1e-69 267.7 675 34.4
DCAR_023172 Daucus carota HOM05D003672 ORTHO05D004121 6.2e-69 266.2 695 34.4
Atru.chr9.577 Acer truncatum HOM05D003672 ORTHO05D004121 8.2e-69 265.8 692 35.4
Nn4g23428 Nelumbo nucifera HOM05D003672 ORTHO05D004121 5.3e-68 263.1 724 33.1
FAN18G3332 Fragaria x ananassa HOM05D003672 ORTHO05D004121 1.5e-67 261.5 739 33.0
QL10p019524 Quercus lobata HOM05D003672 ORTHO05D004121 1.5e-67 261.5 713 34.2
FvH4_5g13830 Fragaria vesca HOM05D003672 ORTHO05D004121 2.6e-67 260.8 739 32.9
TAR629G1848 Trochodendron aralioides HOM05D003672 ORTHO05D004121 2.6e-67 260.8 726 32.8
Thecc.03G101900 Theobroma cacao HOM05D003672 ORTHO05D004121 4.5e-67 260.0 720 33.3
FAN13G1740 Fragaria x ananassa HOM05D003672 ORTHO05D004121 1.4e-65 255.0 742 31.9
Ah.02g114040 Amaranthus hybridus HOM05D003672 ORTHO05D004121 3.2e-65 253.8 663 33.8
Nn3g17451 Nelumbo nucifera HOM05D003672 ORTHO05D004121 7.1e-65 252.7 742 33.3
FAN08G3423 Fragaria x ananassa HOM05D003672 ORTHO05D004121 2.7e-64 250.8 753 32.1
Potri.015G057600 Populus trichocarpa HOM05D003672 ORTHO05D004121 2.7e-64 250.8 701 32.2
TAR629G0952 Trochodendron aralioides HOM05D003672 ORTHO05D004121 4.6e-64 250.0 616 34.7
Hund02585 Selenicereus undatus HOM05D003672 ORTHO05D004121 6.0e-64 249.6 683 34.0
RcHm_v2.0_Chr7g0183101 Rosa chinensis HOM05D003672 ORTHO05D004121 1.8e-63 248.1 705 32.5
Duzib084G0362 Durio zibethinus HOM05D003672 ORTHO05D004121 2.3e-63 247.7 702 33.3
AUR62021559 Chenopodium quinoa HOM05D003672 ORTHO05D004121 3.0e-63 247.3 648 35.5
HanXRQChr09g0270231 Helianthus annuus HOM05D003672 ORTHO05D004121 6.7e-63 246.1 606 34.3
Manes.14G085800 Manihot esculenta HOM05D003672 ORTHO05D004121 8.7e-63 245.7 695 32.9
AUR62008531 Chenopodium quinoa HOM05D003672 ORTHO05D004121 1.1e-62 245.4 657 35.0
Dinv34068 Davidia involucrata HOM05D003672 ORTHO05D004121 1.1e-62 245.4 721 34.1
ECA232G2426 Erigeron canadensis HOM05D003672 ORTHO05D004121 1.9e-62 244.6 621 34.6
COL.COLO4_06856 Corchorus olitorius HOM05D003672 ORTHO05D004121 2.5e-62 244.2 725 32.6
vmacro16495 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 2.5e-62 244.2 678 34.4
EL10Ac5g11131 Beta vulgaris HOM05D003672 ORTHO05D004121 3.3e-62 243.8 676 33.7
Manes.06G084700 Manihot esculenta HOM05D003672 ORTHO05D004121 4.3e-62 243.4 675 34.1
Cpa.g.sc94.57 Carica papaya HOM05D003672 ORTHO05D004121 5.7e-62 243.0 708 33.5
Gorai.001G077200 Gossypium raimondii HOM05D003672 ORTHO05D004121 5.7e-62 243.0 671 34.9
MD14G1212000 Malus domestica HOM05D003672 ORTHO05D004121 1.3e-61 241.9 602 34.9
Lj1g0027425 Lotus japonicus HOM05D003672 ORTHO05D004121 1.6e-61 241.5 701 32.0
Ciclev10019089m.g Citrus clementina HOM05D003672 ORTHO05D004121 3.7e-61 240.4 721 32.5
Gohir.D07G073000 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.1e-60 238.8 673 34.2
Sed0002350 Sechium edule HOM05D003672 ORTHO05D004121 1.1e-60 238.8 693 32.8
Glyma.04G162600 Glycine max HOM05D003672 ORTHO05D004121 1.8e-60 238.0 690 33.3
Gohir.A07G068500 Gossypium hirsutum HOM05D003672 ORTHO05D004121 5.3e-60 236.5 672 34.5
TWI60G1197 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 4.5e-59 233.4 714 31.4
Glyma.06G203700 Glycine max HOM05D003672 ORTHO05D004121 2.2e-58 231.1 685 32.0
CANSAT80G1081 Cannabis sativa HOM05D003672 ORTHO05D004121 8.5e-58 229.2 715 31.7
arahy.Tifrunner.gnm1.ann1.SKH1UB Arachis hypogaea HOM05D003672 ORTHO05D004121 2.5e-57 227.6 704 31.7
PGR083G2392 Punica granatum HOM05D003672 ORTHO05D004121 2.5e-57 227.6 667 31.6
arahy.Tifrunner.gnm1.ann1.N0JE3Z Arachis hypogaea HOM05D003672 ORTHO05D004121 4.2e-57 226.9 704 31.4
Eucgr.B00592 Eucalyptus grandis HOM05D003672 ORTHO05D004121 7.2e-57 226.1 712 31.7
HanXRQChr16g0502451 Helianthus annuus HOM05D003672 ORTHO05D004121 7.2e-57 226.1 610 33.3
VMungo0331G1159 Vigna mungo HOM05D003672 ORTHO05D004121 2.7e-56 224.2 664 33.1
Duzib205G1655 Durio zibethinus HOM05D003672 ORTHO05D004121 4.6e-56 223.4 725 32.6
Lalb_Chr13g0302861 Lupinus albus HOM05D003672 ORTHO05D004121 4.6e-56 223.4 698 30.9
Hund09914 Selenicereus undatus HOM05D003672 ORTHO05D004121 3.9e-55 220.3 689 32.9
Sabra15G0083600 Salix brachista HOM05D003672 ORTHO05D004121 1.1e-54 218.8 710 30.7
Ca_14345_v3 Cicer arietinum L. HOM05D003672 ORTHO05D004121 1.7e-53 214.9 746 30.6
Gohir.A12G182700 Gossypium hirsutum HOM05D003672 ORTHO05D004121 4.8e-53 213.4 694 31.7
Gorai.008G199200 Gossypium raimondii HOM05D003672 ORTHO05D004121 4.8e-53 213.4 698 31.5
PSO478G1233 Papaver somniferum HOM05D003672 ORTHO05D004121 8.2e-53 212.6 651 32.0
Lalb_Chr07g0178301 Lupinus albus HOM05D003672 ORTHO05D004121 4.1e-52 210.3 592 31.9
GSVIVG01012221001 Vitis vinifera HOM05D003672 ORTHO05D004121 4.1e-52 210.3 673 31.9
MELO3C017225.2 Cucumis melo HOM05D003672 ORTHO05D004121 5.3e-52 209.9 738 30.4
ClCG06G015630 Citrullus lanatus HOM05D003672 ORTHO05D004121 1.2e-51 208.8 597 32.7
Psat2g037720 Pisum sativum HOM05D003672 ORTHO05D004121 1.2e-51 208.8 668 30.5
THA.LOC104819401 Tarenaya hassleriana HOM05D003672 ORTHO05D004121 1.2e-51 208.8 687 30.0
Aqoxy1G00151 Aquilegia oxysepala HOM05D003672 ORTHO05D004121 2.0e-51 208.0 535 33.5
Medtr3g025870 Medicago truncatula HOM05D003672 ORTHO05D004121 2.6e-51 207.6 693 30.3
Gohir.D12G185800 Gossypium hirsutum HOM05D003672 ORTHO05D004121 4.5e-51 206.8 586 33.3
Phvul.010G007200 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 1.3e-50 205.3 683 30.6
arahy.Tifrunner.gnm1.ann1.R6LVKU Arachis hypogaea HOM05D003672 ORTHO05D004121 1.7e-50 204.9 718 30.8
Cfa019341 Carpinus fangiana HOM05D003672 ORTHO05D004121 3.8e-50 203.8 698 30.7
Dinv17414 Davidia involucrata HOM05D003672 ORTHO05D004121 3.8e-50 203.8 685 30.9
PSO017G3206 Papaver somniferum HOM05D003672 ORTHO05D004121 3.8e-50 203.8 642 32.2
arahy.Tifrunner.gnm1.ann1.03S8MC Arachis hypogaea HOM05D003672 ORTHO05D004121 6.5e-50 203.0 717 30.7
Actinidia31938 Actinidia chinensis HOM05D003672 ORTHO05D004121 1.9e-49 201.4 627 31.9
TPR.G12189 Trifolium pratense HOM05D003672 ORTHO05D004121 1.6e-48 198.4 715 28.4
GSVIVG01007866001 Vitis vinifera HOM05D003672 ORTHO05D004121 4.7e-48 196.8 714 28.9
Lsat_1_v5_gn_4_111040 Lactuca sativa HOM05D003672 ORTHO05D004121 6.1e-48 196.4 612 31.9
CsaV3_1G002930 Cucumis sativus L. HOM05D003672 ORTHO05D004121 1.0e-47 195.7 702 29.8
Carub.0008s2173 Capsella rubella HOM05D003672 ORTHO05D004121 1.4e-47 195.3 668 29.3
Haze_07732 Corylus avellana HOM05D003672 ORTHO05D004121 1.4e-47 195.3 810 29.1
Ah.11g047770 Amaranthus hybridus HOM05D003672 ORTHO05D004121 1.1e-46 192.2 687 30.9
CiPaw.12G008500 Carya illinoinensis HOM05D003672 ORTHO05D004121 5.7e-46 189.9 717 30.1
CAN.G1228.26 Capsicum annuum HOM05D003672 ORTHO05D004121 7.4e-46 189.5 429 37.3
CAN.G3169.1 Capsicum annuum HOM05D002946 ORTHO05D003299 9.7e-46 189.1 392 39.5
CAN.G1228.24 Capsicum annuum HOM05D003672 ORTHO05D004121 1.7e-45 188.3 342 41.8
AL8G37700 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 2.8e-45 187.6 671 29.1
TWI81G0716 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 1.1e-44 185.7 695 27.2
AT5G61040 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 3.1e-44 184.1 669 28.8
CARHR274750 Cardamine hirsuta HOM05D003672 ORTHO05D004121 4.1e-44 183.7 634 27.4
Thhalv10003875m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 7.0e-44 183.0 684 28.4
Lj5A435T21 Lonicera japonica HOM05D003672 ORTHO05D004121 9.1e-44 182.6 689 31.1
BraA03t13796Z Brassica rapa HOM05D003672 ORTHO05D004121 1.3e-42 178.7 680 28.5
TWI15G0151 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 5.5e-41 173.3 706 27.2
MBI16_g38067_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 7.2e-41 172.9 730 27.7
Sc12g0007260 Simmondsia chinensis HOM05D003672 ORTHO05D004121 1.6e-40 171.8 472 34.7
AL6G18360 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 3.6e-40 170.6 663 29.9
CSS0037619 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D004121 3.6e-40 170.6 603 30.3
Aa31LG3G18520 Aethionema arabicum HOM05D003672 ORTHO05D004121 4.7e-40 170.2 665 28.6
CiPaw.11G053900 Carya illinoinensis HOM05D003672 ORTHO05D004121 2.3e-39 167.9 533 31.0
BcaC06g33181 Brassica carinata HOM05D003672 ORTHO05D004121 8.8e-39 166.0 663 26.7
Sp2g24340 Schrenkiella parvula HOM05D003672 ORTHO05D004121 2.0e-38 164.9 677 27.8
C07p44780 Brassica napus HOM05D003672 ORTHO05D004121 4.4e-38 163.7 662 27.0
Lj4g0018287 Lotus japonicus HOM05D003672 ORTHO05D004121 9.7e-38 162.5 473 33.6
unitig_749.g13432 Utricularia gibba HOM05D003672 ORTHO05D004121 2.8e-37 161.0 371 37.2
Carub.0006s0690 Capsella rubella HOM05D003672 ORTHO05D004121 1.1e-36 159.1 670 28.2
QL03p074101 Quercus lobata HOM05D003672 ORTHO05D004121 1.4e-36 158.7 569 30.1
Glyma.05G021000 Glycine max HOM05D003672 ORTHO05D004121 2.4e-36 157.9 696 29.7
AT5G08010 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 5.3e-36 156.8 670 27.6
BolC7t45002H Brassica oleracea HOM05D003672 ORTHO05D004121 2.6e-35 154.5 658 26.4
A03p46740 Brassica napus HOM05D003672 ORTHO05D004121 1.0e-34 152.5 671 27.6
Haze_11907 Corylus avellana HOM05D003672 ORTHO05D004121 6.5e-34 149.8 531 31.8
Os12g0576300 Oryza sativa ssp. japonica HOM05D003672 ORTHO05D004121 1.9e-33 148.3 543 28.7
Rhsim12G0075200 Rhododendron simsii HOM05D003672 ORTHO05D004121 2.5e-33 147.9 743 28.3
VMungo1215G2632 Vigna mungo HOM05D003672 ORTHO05D004121 2.1e-32 144.8 429 32.6
Rhsim12G0074700 Rhododendron simsii HOM05D003672 ORTHO05D004121 8.0e-32 142.9 748 27.7
Zm00001eb029540 Zea mays HOM05D003672 ORTHO05D004121 1.0e-31 142.5 533 29.8
PGR102G2240 Punica granatum HOM05D003672 ORTHO05D004121 3.0e-31 141.0 535 29.9
ATR0177G058 Amborella trichopoda HOM05D003672 ORTHO05D004121 8.8e-31 139.4 512 29.9
Thhalv10013089m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 8.8e-31 139.4 676 26.2
HPP92_007830 Vanilla planifolia HOM05D003672 ORTHO05D004121 1.5e-30 138.7 377 32.1
Phvul.003G184800 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 1.7e-29 135.2 496 30.0
QL03p074186 Quercus lobata HOM05D003672 ORTHO05D004121 2.8e-29 134.4 534 29.2
BraA10t44910Z Brassica rapa HOM05D003672 ORTHO05D004121 1.1e-28 132.5 651 27.0
Eucgr.B03149 Eucalyptus grandis HOM05D003672 ORTHO05D004121 7.0e-28 129.8 572 27.4
Zm00001eb136280 Zea mays HOM05D003672 ORTHO05D004121 7.0e-28 129.8 400 32.0
CARHR205170 Cardamine hirsuta HOM05D003672 ORTHO05D004121 9.1e-28 129.4 597 27.1
CiPaw.05G125000 Carya illinoinensis HOM05D003672 ORTHO05D004121 9.1e-28 129.4 514 31.1
Aa31LG11G2260 Aethionema arabicum HOM05D003672 ORTHO05D004121 1.6e-27 128.6 644 27.2
Manes.01G028000 Manihot esculenta HOM05D003672 ORTHO05D004121 7.7e-27 126.3 500 29.2
A10p28610 Brassica napus HOM05D003672 ORTHO05D004121 1.0e-26 125.9 578 26.6
BolC9t59636H Brassica oleracea HOM05D003672 ORTHO05D004121 1.0e-26 125.9 645 26.7
C09p68900 Brassica napus HOM05D003672 ORTHO05D004121 2.2e-26 124.8 646 27.2
Cc11_g11950 Coffea canephora HOM05D003672 ORTHO05D004121 1.5e-25 122.1 581 28.6
Sp6g34930 Schrenkiella parvula HOM05D003672 ORTHO05D004121 3.2e-25 120.9 668 26.3
BcaB08g37298 Brassica carinata HOM05D003672 ORTHO05D004121 5.5e-25 120.2 391 30.9
CsaV3_1G005970 Cucumis sativus L. HOM05D003672 ORTHO05D004121 3.6e-24 117.5 513 28.5
MELO3C002028.2 Cucumis melo HOM05D003672 ORTHO05D004121 6.8e-23 113.2 519 27.9
Sabra08G0072400 Salix brachista HOM05D003672 ORTHO05D004121 7.5e-22 109.8 252 36.1
Peaxi162Scf00175g00022 Petunia axillaris HOM05D003672 ORTHO05D004121 1.1e-20 105.9 245 34.7
SEGI_35614 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 2.4e-20 104.8 570 27.7
CANSAT39G0004 Cannabis sativa HOM05D003672 ORTHO05D004121 4.1e-20 104.0 227 37.0
ClCG04G011810 Citrullus lanatus HOM05D003672 ORTHO05D004121 7.0e-20 103.2 525 26.7
HPP92_000460 Vanilla planifolia HOM05D003672 ORTHO05D004121 2.0e-19 101.7 418 28.2
Migut.L01189 Erythranthe guttata HOM05D003672 ORTHO05D004121 2.7e-19 101.3 341 29.9
MBI16_g36263_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 4.5e-19 100.5 486 27.2
SEGI_10408 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 4.5e-19 100.5 547 25.8
SalBow2G2767 Salvia bowleyana HOM05D003672 ORTHO05D004121 5.9e-19 100.1 377 30.8
Potri.008G096100 Populus trichocarpa HOM05D003672 ORTHO05D004121 7.7e-19 99.8 499 29.7
Atru.chr11.1624 Acer truncatum HOM05D003672 ORTHO05D004121 2.3e-18 98.2 274 32.1
Oeu004585.2 Olea europaea HOM05D003672 ORTHO05D004121 5.5e-17 93.6 516 26.2
BcaB08g37300 Brassica carinata HOM05D003672 ORTHO05D004121 9.5e-17 92.8 199 36.7
CDE07G1307 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 2.1e-16 91.7 468 26.1
Sed0025785 Sechium edule HOM05D003672 ORTHO05D004121 2.8e-16 91.3 521 25.7
Lsat_1_v5_gn_8_46340 Lactuca sativa HOM05D003672 ORTHO05D004121 4.7e-16 90.5 513 26.9
vmacro01315 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 6.1e-16 90.1 689 26.3
Nitab4.5_0000231g0260 Nicotiana tabacum HOM05D003672 ORTHO05D004121 2.3e-15 88.2 233 32.6
CDE04G0191 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 5.2e-15 87.0 333 31.5
Solyc05g012230.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 6.8e-15 86.7 296 30.1
PGSC0003DMG400028369 Solanum tuberosum HOM05D003672 ORTHO05D004121 8.3e-13 79.7 301 28.2
Ciclev10033781m.g Citrus clementina HOM05D003672 ORTHO05D004121 3.2e-12 77.8 226 30.1
VMungo1215G3071 Vigna mungo HOM05D003672 ORTHO05D004121 7.0e-12 76.6 201 33.8
Nitab4.5_0009585g0010 Nicotiana tabacum HOM05D003672 ORTHO05D004121 2.7e-11 74.7 232 32.3
Sopen05g007060 Solanum pennellii HOM05D003672 ORTHO05D004121 5.0e-10 70.5 306 26.8
ECA233G1662 Erigeron canadensis HOM05D000677 ORTHO05D000727 1.2e-08 65.9 277 30.3
Actinidia19914 Actinidia chinensis HOM05D000020 ORTHO05D000156 1.6e-08 65.5 118 37.3
HanXRQChr12g0363081 Helianthus annuus HOM05D003672 ORTHO05D004121 6.1e-08 63.5 488 25.6
Glyma.06G061800 Glycine max HOM05D005497 ORTHO05D006733 6.8e-07 60.1 281 27.4


User provided reference genes

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