Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G10938 Striga asiatica HOM05D004089 ORTHO05D004687 2.0e-173 612.5 332 100.0
MSTRG.11370 Avicennia marina HOM05D004089 ORTHO05D004687 1.3e-60 237.7 305 49.5
MSTRG.4442 Avicennia marina HOM05D004089 ORTHO05D004687 9.8e-56 221.5 309 45.0
Oeu046997.1 Olea europaea HOM05D004089 ORTHO05D004687 2.5e-51 206.8 301 43.5
Migut.I00216 Erythranthe guttata HOM05D004089 ORTHO05D004687 4.3e-51 206.1 319 45.5
Oeu052462.1 Olea europaea HOM05D004089 ORTHO05D004687 3.6e-50 203.0 304 45.1
Dinv10661 Davidia involucrata HOM05D004089 ORTHO05D004687 1.8e-49 200.7 290 44.5
CSS0014968 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 2.3e-49 200.3 306 42.8
unitig_26.g9653 Utricularia gibba HOM05D004089 ORTHO05D004687 2.6e-48 196.8 324 41.4
Rhsim08G0151100 Rhododendron simsii HOM05D004089 ORTHO05D004687 3.4e-48 196.4 302 42.1
Migut.D01757 Erythranthe guttata HOM05D004089 ORTHO05D004687 9.8e-48 194.9 339 40.4
Oeu047272.1 Olea europaea HOM05D004089 ORTHO05D004687 9.8e-48 194.9 299 43.5
CSS0037629 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 3.7e-47 193.0 299 42.5
FAN13G1369 Fragaria x ananassa HOM05D004089 ORTHO05D004687 1.1e-46 191.4 304 41.8
CSS0014802 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 2.4e-46 190.3 299 42.5
TAR629G0233 Trochodendron aralioides HOM05D004089 ORTHO05D004687 2.4e-46 190.3 306 42.5
FAN08G0374 Fragaria x ananassa HOM05D004089 ORTHO05D004687 3.2e-46 189.9 304 41.8
RcHm_v2.0_Chr7g0182161 Rosa chinensis HOM05D004089 ORTHO05D004687 3.2e-46 189.9 306 41.8
Ciclev10020945m.g Citrus clementina HOM05D004089 ORTHO05D004687 5.4e-46 189.1 307 43.0
FvH4_5g14500 Fragaria vesca HOM05D004089 ORTHO05D004687 1.2e-45 188.0 304 41.1
FAN18G2014 Fragaria x ananassa HOM05D004089 ORTHO05D004687 1.2e-45 188.0 304 41.1
Hma1.2p1_0060F.1_g033460 Hydrangea macrophylla HOM05D004089 ORTHO05D004687 2.1e-45 187.2 299 43.1
Thecc.03G094700 Theobroma cacao HOM05D004089 ORTHO05D004687 4.6e-45 186.0 299 41.1
MBI19_g43436_MAGBIO Magnolia biondii HOM05D004089 ORTHO05D004687 6.0e-45 185.7 306 42.5
SalBow7G3788 Salvia bowleyana HOM05D004089 ORTHO05D004687 6.0e-45 185.7 290 42.8
Gohir.D07G074900 Gossypium hirsutum HOM05D004089 ORTHO05D004687 1.7e-44 184.1 309 42.1
COL.COLO4_00682 Corchorus olitorius HOM05D004089 ORTHO05D004687 2.3e-44 183.7 311 39.9
Cc04_g14350 Coffea canephora HOM05D004089 ORTHO05D004687 3.9e-44 183.0 303 41.3
Gorai.001G079000 Gossypium raimondii HOM05D004089 ORTHO05D004687 3.9e-44 183.0 309 41.7
Haze_07654 Corylus avellana HOM05D004089 ORTHO05D004687 6.6e-44 182.2 309 41.1
Gohir.A07G070400 Gossypium hirsutum HOM05D004089 ORTHO05D004687 6.6e-44 182.2 309 41.7
Duzib068G1131 Durio zibethinus HOM05D004089 ORTHO05D004687 8.6e-44 181.8 306 40.5
Duzib205G1783 Durio zibethinus HOM05D004089 ORTHO05D004687 1.1e-43 181.4 306 41.2
EL10Ac5g11067 Beta vulgaris HOM05D004089 ORTHO05D004687 1.5e-43 181.0 311 41.2
Prupe.5G198800 Prunus persica HOM05D004089 ORTHO05D004687 1.5e-43 181.0 304 43.4
QL10p017912 Quercus lobata HOM05D004089 ORTHO05D004687 1.5e-43 181.0 321 41.1
SGA_v2.0_scaffold7G04046 Striga asiatica HOM05D004089 ORTHO05D004687 1.9e-43 180.6 316 42.1
DCAR_026035 Daucus carota HOM05D004089 ORTHO05D004687 2.5e-43 180.3 294 41.5
Sabra15G0086100 Salix brachista HOM05D004089 ORTHO05D004687 2.5e-43 180.3 318 39.9
Lj5P107T92 Lonicera japonica HOM05D004089 ORTHO05D004687 3.3e-43 179.9 308 40.9
Phvul.003G187900 Phaseolus vulgaris HOM05D004089 ORTHO05D004687 5.6e-43 179.1 300 38.7
CiPaw.12G011700 Carya illinoinensis HOM05D004089 ORTHO05D004687 7.3e-43 178.7 325 39.1
Cfa019278 Carpinus fangiana HOM05D004089 ORTHO05D004687 1.2e-42 177.9 309 41.7
MD06G1197900 Malus domestica HOM05D004089 ORTHO05D004687 2.1e-42 177.2 310 41.3
VMungo1215G0778 Vigna mungo HOM05D004089 ORTHO05D004687 2.8e-42 176.8 301 38.2
arahy.Tifrunner.gnm1.ann1.JX1FK0 Arachis hypogaea HOM05D004089 ORTHO05D004687 4.7e-42 176.0 298 39.6
Glyma.04G165800 Glycine max HOM05D004089 ORTHO05D004687 6.2e-42 175.6 301 39.5
Glyma.05G024600 Glycine max HOM05D004089 ORTHO05D004687 8.1e-42 175.3 300 39.0
Phvul.009G184900 Phaseolus vulgaris HOM05D004089 ORTHO05D004687 8.1e-42 175.3 301 40.5
AT5G61340 Arabidopsis thaliana HOM05D004089 ORTHO05D004687 2.3e-41 173.7 308 42.2
DCAR_021516 Daucus carota HOM05D004089 ORTHO05D004687 2.3e-41 173.7 295 38.0
Aqoxy3G03505 Aquilegia oxysepala HOM05D004089 ORTHO05D004687 4.0e-41 172.9 297 37.7
Manes.14G082100 Manihot esculenta HOM05D004089 ORTHO05D004687 4.0e-41 172.9 302 42.4
Gohir.D11G035700 Gossypium hirsutum HOM05D004089 ORTHO05D004687 5.2e-41 172.6 309 37.9
VMungo1309G2967 Vigna mungo HOM05D004089 ORTHO05D004687 5.2e-41 172.6 305 40.3
DCAR_016583 Daucus carota HOM05D004089 ORTHO05D004687 8.9e-41 171.8 301 38.9
Potri.015G060900 Populus trichocarpa HOM05D004089 ORTHO05D004687 8.9e-41 171.8 315 38.4
AL8G38000 Arabidopsis lyrata HOM05D004089 ORTHO05D004687 1.5e-40 171.0 308 41.6
MD14G1205500 Malus domestica HOM05D004089 ORTHO05D004687 2.0e-40 170.6 297 39.4
Manes.06G089200 Manihot esculenta HOM05D004089 ORTHO05D004687 2.0e-40 170.6 301 39.2
Glyma.17G102700 Glycine max HOM05D004089 ORTHO05D004687 2.6e-40 170.2 308 38.3
unitig_749.g13440 Utricularia gibba HOM05D004089 ORTHO05D004687 2.6e-40 170.2 322 40.1
Gorai.007G038500 Gossypium raimondii HOM05D004089 ORTHO05D004687 3.4e-40 169.9 309 37.9
TWI81G0628 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 4.4e-40 169.5 306 41.5
Carub.0008s2201 Capsella rubella HOM05D004089 ORTHO05D004687 7.5e-40 168.7 310 41.9
Rhsim08G0151200 Rhododendron simsii HOM05D004089 ORTHO05D004687 9.9e-40 168.3 300 37.0
Gohir.A11G032400 Gossypium hirsutum HOM05D004089 ORTHO05D004687 1.3e-39 167.9 309 37.5
Solyc06g069680.1 Solanum lycopersicum HOM05D004089 ORTHO05D004687 1.7e-39 167.5 296 36.8
Lsat_1_v5_gn_4_109001 Lactuca sativa HOM05D004089 ORTHO05D004687 3.7e-39 166.4 308 39.0
Glyma.06G196700 Glycine max HOM05D004089 ORTHO05D004687 4.9e-39 166.0 302 39.1
HanXRQChr16g0502591 Helianthus annuus HOM05D004089 ORTHO05D004687 4.9e-39 166.0 307 37.8
Lj4g0011676 Lotus japonicus HOM05D004089 ORTHO05D004687 4.9e-39 166.0 289 39.4
HanXRQChr09g0270961 Helianthus annuus HOM05D004089 ORTHO05D004687 6.4e-39 165.6 310 37.4
Sopen06g026980 Solanum pennellii HOM05D004089 ORTHO05D004687 6.4e-39 165.6 296 36.5
PGSC0003DMG400024664 Solanum tuberosum HOM05D004089 ORTHO05D004687 1.1e-38 164.9 304 38.8
TPR.G2017 Trifolium pratense HOM05D004089 ORTHO05D004687 1.1e-38 164.9 307 37.1
Peaxi162Scf00274g10024 Petunia axillaris HOM05D004089 ORTHO05D004687 1.4e-38 164.5 320 38.1
TAR371G1138 Trochodendron aralioides HOM05D004089 ORTHO05D004687 1.4e-38 164.5 278 41.7
A03p46950 Brassica napus HOM05D004089 ORTHO05D004687 1.9e-38 164.1 313 39.6
Medtr4g109020 Medicago truncatula HOM05D004089 ORTHO05D004687 1.9e-38 164.1 307 36.2
PGR044G2522 Punica granatum HOM05D004089 ORTHO05D004687 2.4e-38 163.7 301 40.9
Nn3g17343 Nelumbo nucifera HOM05D004089 ORTHO05D004687 3.2e-38 163.3 300 39.0
C07p44990 Brassica napus HOM05D004089 ORTHO05D004687 7.1e-38 162.2 308 40.6
BraA03t13814Z Brassica rapa HOM05D004089 ORTHO05D004687 7.1e-38 162.2 313 39.6
THA.LOC104801435 Tarenaya hassleriana HOM05D004089 ORTHO05D004687 9.2e-38 161.8 302 40.7
unitig_749.g14136 Utricularia gibba HOM05D004089 ORTHO05D004687 9.2e-38 161.8 328 38.4
CARHR275100 Cardamine hirsuta HOM05D004089 ORTHO05D004687 2.1e-37 160.6 302 40.1
PSO478G2558 Papaver somniferum HOM05D004089 ORTHO05D004687 2.1e-37 160.6 309 36.6
Psat5g199240 Pisum sativum HOM05D004089 ORTHO05D004687 2.7e-37 160.2 298 38.6
BolC7t45022H Brassica oleracea HOM05D004089 ORTHO05D004687 6.0e-37 159.1 308 39.6
Sc04g0002900 Simmondsia chinensis HOM05D004089 ORTHO05D004687 6.0e-37 159.1 315 40.0
TWI60G1703 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 7.8e-37 158.7 303 40.6
Atru.chr9.325 Acer truncatum HOM05D004089 ORTHO05D004687 1.0e-36 158.3 303 38.3
BcaB04g19907 Brassica carinata HOM05D004089 ORTHO05D004687 1.0e-36 158.3 301 40.2
PSO017G6425 Papaver somniferum HOM05D004089 ORTHO05D004687 1.3e-36 157.9 309 35.6
Medtr3g037110 Medicago truncatula HOM05D004089 ORTHO05D004687 1.7e-36 157.5 298 37.6
A09p07290 Brassica napus HOM05D004089 ORTHO05D004687 2.3e-36 157.1 301 39.2
Gohir.D12G182200 Gossypium hirsutum HOM05D004089 ORTHO05D004687 3.9e-36 156.4 306 38.2
Solyc03g115690.1 Solanum lycopersicum HOM05D004089 ORTHO05D004687 3.9e-36 156.4 304 38.8
Gorai.008G195500 Gossypium raimondii HOM05D004089 ORTHO05D004687 5.1e-36 156.0 306 37.9
Psat4g049120 Pisum sativum HOM05D004089 ORTHO05D004687 5.1e-36 156.0 292 37.0
C09p08150 Brassica napus HOM05D004089 ORTHO05D004687 1.1e-35 154.8 296 39.2
CANSAT80G2067 Cannabis sativa HOM05D004089 ORTHO05D004687 1.5e-35 154.5 326 35.3
TWI15G0089 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 1.9e-35 154.1 307 39.4
CiPaw.11G047700 Carya illinoinensis HOM05D004089 ORTHO05D004687 3.3e-35 153.3 260 41.9
Haze_14490 Corylus avellana HOM05D004089 ORTHO05D004687 4.3e-35 152.9 313 36.7
Sopen03g034670 Solanum pennellii HOM05D004089 ORTHO05D004687 4.3e-35 152.9 304 38.8
CsaV3_1G002580 Cucumis sativus L. HOM05D004089 ORTHO05D004687 5.6e-35 152.5 314 36.9
Sed0015191 Sechium edule HOM05D004089 ORTHO05D004687 1.2e-34 151.4 303 38.9
MELO3C017194.2 Cucumis melo HOM05D004089 ORTHO05D004687 1.6e-34 151.0 304 36.2
ClCG04G012070 Citrullus lanatus HOM05D004089 ORTHO05D004687 3.6e-34 149.8 301 37.5
Sed0006516 Sechium edule HOM05D004089 ORTHO05D004687 3.6e-34 149.8 299 38.1
Lsat_1_v5_gn_1_13901 Lactuca sativa HOM05D004089 ORTHO05D004687 4.7e-34 149.4 309 37.2
Lj1g0017851 Lotus japonicus HOM05D004089 ORTHO05D004687 4.7e-34 149.4 304 37.8
Thhalv10005448m.g Eutrema salsugineum HOM05D004089 ORTHO05D004687 1.1e-33 148.3 301 37.9
HanXRQChr04g0107211 Helianthus annuus HOM05D004089 ORTHO05D004687 1.1e-33 148.3 303 37.0
Sp2g24550 Schrenkiella parvula HOM05D004089 ORTHO05D004687 1.2e-32 144.8 308 39.0
MELO3C002001.2 Cucumis melo HOM05D004089 ORTHO05D004687 2.0e-32 144.1 301 37.5
Eucgr.B00548 Eucalyptus grandis HOM05D004089 ORTHO05D004687 2.0e-32 144.1 305 38.0
BcaC03g18095 Brassica carinata HOM05D004089 ORTHO05D004687 3.4e-32 143.3 317 38.5
ClCG06G015980 Citrullus lanatus HOM05D004089 ORTHO05D004687 3.4e-32 143.3 315 34.9
CsaV3_1G005700 Cucumis sativus L. HOM05D004089 ORTHO05D004687 1.7e-31 141.0 301 36.2
Gohir.A11G032333 Gossypium hirsutum HOM05D004089 ORTHO05D004687 4.9e-31 139.4 269 37.5
Ca_21804_v3 Cicer arietinum L. HOM05D004089 ORTHO05D004687 1.9e-30 137.5 294 36.4
Dinv11500 Davidia involucrata HOM05D001066 ORTHO05D000891 2.4e-30 137.1 296 36.5
QL02p084965 Quercus lobata HOM05D004089 ORTHO05D004687 9.2e-30 135.2 303 35.0
Aa31LG11G2070 Aethionema arabicum HOM05D004089 ORTHO05D004687 1.6e-29 134.4 304 36.8
Eucgr.K02492 Eucalyptus grandis HOM05D004089 ORTHO05D004687 1.6e-29 134.4 282 39.0
BcaC04g23456 Brassica carinata HOM05D004089 ORTHO05D004687 3.5e-29 133.3 296 35.1
PSO063G0630 Papaver somniferum HOM05D004089 ORTHO05D004687 7.8e-29 132.1 297 34.0
Potri.012G068000 Populus trichocarpa HOM05D004089 ORTHO05D004687 7.8e-29 132.1 262 38.2
ATR0730G119 Amborella trichopoda HOM05D004089 ORTHO05D004687 3.0e-28 130.2 303 35.6
Lalb_Chr13g0303071 Lupinus albus HOM05D004089 ORTHO05D004687 1.1e-27 128.3 317 32.8
GSVIVG01011469001 Vitis vinifera HOM05D004089 ORTHO05D004687 1.1e-27 128.3 298 36.2
Dinv38750 Davidia involucrata HOM05D004089 ORTHO05D004687 1.9e-27 127.5 273 37.7
Os12g0577200 Oryza sativa ssp. japonica HOM05D004089 ORTHO05D004687 9.6e-27 125.2 311 33.8
Sed0010910 Sechium edule HOM05D004089 ORTHO05D004687 1.6e-26 124.4 310 33.9
Zm00001eb136250 Zea mays HOM05D004089 ORTHO05D004687 2.1e-26 124.0 307 35.5
PGR083G0705 Punica granatum HOM05D004089 ORTHO05D004687 2.8e-26 123.6 301 34.9
BcaB07g29822 Brassica carinata HOM05D004089 ORTHO05D004687 4.7e-26 122.9 309 36.2
BraA02t09111Z Brassica rapa HOM05D004089 ORTHO05D004687 3.1e-25 120.2 315 34.6
BolC2t12218H Brassica oleracea HOM05D002313 ORTHO05D003747 5.3e-25 119.4 300 36.3
CiPaw.03G021500 Carya illinoinensis HOM05D004089 ORTHO05D004687 1.2e-24 118.2 298 34.2
C02p61630 Brassica napus HOM05D002313 ORTHO05D003747 2.6e-24 117.1 315 34.3
Oeu006382.1 Olea europaea HOM05D000714 ORTHO05D000544 4.4e-24 116.3 166 42.8
Lalb_Chr07g0178191 Lupinus albus HOM05D004089 ORTHO05D004687 1.7e-23 114.4 222 36.9
Potri.004G102800 Populus trichocarpa HOM05D004089 ORTHO05D004687 6.4e-23 112.5 308 34.7
A02p41700 Brassica napus HOM05D002313 ORTHO05D004687 8.4e-23 112.1 298 35.2
THA.LOC104818514 Tarenaya hassleriana HOM05D004089 ORTHO05D004687 8.4e-23 112.1 285 36.1
Duzib264G0571 Durio zibethinus HOM05D004089 ORTHO05D004687 1.1e-22 111.7 302 33.1
Zm00001eb029590 Zea mays HOM05D004089 ORTHO05D004687 1.9e-22 110.9 308 34.4
Sabra04G0077800 Salix brachista HOM05D004089 ORTHO05D004687 2.1e-21 107.5 313 32.6
Rhsim08G0150900 Rhododendron simsii HOM05D004089 ORTHO05D004687 1.7e-20 104.4 155 41.9
Thecc.04G088100 Theobroma cacao HOM05D004089 ORTHO05D004687 1.7e-20 104.4 298 32.2
Gohir.A12G179600 Gossypium hirsutum HOM05D004089 ORTHO05D004687 8.7e-20 102.1 183 38.3
Manes.02G049400 Manihot esculenta HOM05D004089 ORTHO05D004687 1.1e-19 101.7 318 32.7
Zm00001eb264770 Zea mays HOM05D004089 ORTHO05D004687 1.5e-19 101.3 321 31.2
Manes.01G100800 Manihot esculenta HOM05D004089 ORTHO05D004687 1.8e-17 94.4 325 30.5
Os12g0507400 Oryza sativa ssp. japonica HOM05D004089 ORTHO05D004687 1.8e-17 94.4 314 29.3
Ca_13877_v3 Cicer arietinum L. HOM05D004089 ORTHO05D004687 9.0e-17 92.0 173 37.6
TAR369G0101 Trochodendron aralioides HOM05D004089 ORTHO05D004687 4.5e-16 89.7 121 43.8
Cpa.g.sc13.300 Carica papaya HOM05D004089 ORTHO05D004687 5.8e-16 89.4 117 44.4
TAR626G1449 Trochodendron aralioides HOM05D004089 ORTHO05D004687 7.6e-16 89.0 121 43.0
Lj9A467G76 Lonicera japonica HOM05D004089 ORTHO05D004687 4.9e-15 86.3 116 42.2
CDE07G1350 Ceratophyllum demersum HOM05D004089 ORTHO05D004687 8.4e-15 85.5 154 35.1
Atru.chr8.335 Acer truncatum HOM05D004089 ORTHO05D004687 1.9e-14 84.3 301 29.2
TPR.G12274 Trifolium pratense HOM05D000041 ORTHO05D006140 3.5e-13 80.1 129 38.0
CSS0047924 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 1.0e-12 78.6 157 36.9
CDE04G1821 Ceratophyllum demersum HOM05D004089 ORTHO05D004687 1.0e-12 78.6 122 37.7
Duzib147G1274 Durio zibethinus HOM05D004089 ORTHO05D004687 3.0e-12 77.0 226 32.3
SEGI_21937 Sequoiadendron giganteum HOM05D003669 ORTHO05D005046 5.6e-11 72.8 290 29.3
AUR62008468 Chenopodium quinoa HOM05D000001 ORTHO05D011953 1.3e-07 61.6 165 34.5
COL.COLO4_12233 Corchorus olitorius HOM05D004089 ORTHO05D004687 1.7e-07 61.2 101 37.6
PSO063G7677 Papaver somniferum HOM05D004089 ORTHO05D004687 8.4e-07 58.9 97 37.1
SEGI_22214 Sequoiadendron giganteum HOM05D003669 ORTHO05D005046 7.1e-06 55.8 223 26.0


User provided reference genes

Program Settings