Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G10913 Striga asiatica HOM05D006541 ORTHO05D008471 1.5e-209 732.6 379 100.0
MSTRG.11386 Avicennia marina HOM05D006541 ORTHO05D008471 4.0e-154 548.5 389 75.3
Oeu006508.1 Olea europaea HOM05D006541 ORTHO05D008471 8.3e-152 540.8 389 74.0
Migut.I00173 Erythranthe guttata HOM05D006541 ORTHO05D008471 8.6e-149 530.8 382 75.9
Cc04_g16740 Coffea canephora HOM05D006541 ORTHO05D008471 5.1e-141 505.0 384 70.3
Lj5A111T86 Lonicera japonica HOM05D006541 ORTHO05D008471 4.0e-138 495.4 388 68.6
Dinv38701 Davidia involucrata HOM05D006541 ORTHO05D008471 1.7e-136 490.0 387 69.3
Nitab4.5_0000842g0050 Nicotiana tabacum HOM05D006541 ORTHO05D008471 1.2e-134 483.8 405 65.9
Duzib205G0457 Durio zibethinus HOM05D006541 ORTHO05D008471 1.0e-133 480.7 399 67.7
Nitab4.5_0012137g0020 Nicotiana tabacum HOM05D006541 ORTHO05D008471 1.3e-133 480.3 405 65.4
CAN.G837.10 Capsicum annuum HOM05D006541 ORTHO05D008471 3.9e-133 478.8 399 65.7
Peaxi162Scf00274g00732 Petunia axillaris HOM05D006541 ORTHO05D008471 3.9e-133 478.8 404 64.6
Thecc.03G085100 Theobroma cacao HOM05D006541 ORTHO05D008471 4.0e-130 468.8 401 66.3
unitig_0.g2528 Utricularia gibba HOM05D006541 ORTHO05D008471 4.0e-130 468.8 381 66.9
Hma1.2p1_0104F.1_g049970 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 5.3e-130 468.4 380 67.4
Solyc03g116140.3 Solanum lycopersicum HOM05D006541 ORTHO05D008471 6.9e-130 468.0 399 65.7
Gorai.003G096900 Gossypium raimondii HOM05D006541 ORTHO05D008471 1.5e-129 466.8 426 62.7
Atru.chr9.2260 Acer truncatum HOM05D006541 ORTHO05D008471 2.0e-129 466.5 402 64.2
DCAR_016545 Daucus carota HOM05D006541 ORTHO05D008471 5.8e-129 464.9 387 65.9
Gohir.A03G066400 Gossypium hirsutum HOM05D006541 ORTHO05D008471 5.8e-129 464.9 399 65.7
Sopen03g035110 Solanum pennellii HOM05D006541 ORTHO05D008471 1.3e-128 463.8 399 64.4
PGSC0003DMG400019513 Solanum tuberosum HOM05D006541 ORTHO05D008471 1.3e-128 463.8 399 64.7
Gohir.D03G093000 Gossypium hirsutum HOM05D006541 ORTHO05D008471 1.7e-128 463.4 389 66.6
Cfa018953 Carpinus fangiana HOM05D006541 ORTHO05D008471 2.9e-128 462.6 400 64.0
HanXRQChr02g0041061 Helianthus annuus HOM05D006541 ORTHO05D008471 3.8e-128 462.2 381 65.6
Lsat_1_v5_gn_1_13281 Lactuca sativa HOM05D006541 ORTHO05D008471 3.8e-128 462.2 388 64.4
QL10p016702 Quercus lobata HOM05D006541 ORTHO05D008471 4.6e-126 455.3 399 62.4
Lj4g0004556 Lotus japonicus HOM05D006541 ORTHO05D008471 1.3e-125 453.8 398 63.3
Eucgr.B00491 Eucalyptus grandis HOM05D006541 ORTHO05D008471 5.1e-125 451.8 387 64.1
TAR629G1448 Trochodendron aralioides HOM05D006541 ORTHO05D008471 5.1e-125 451.8 383 64.0
Nn4g23149 Nelumbo nucifera HOM05D006541 ORTHO05D008471 8.7e-125 451.1 388 63.4
GSVIVG01008019001 Vitis vinifera HOM05D006541 ORTHO05D008471 8.7e-125 451.1 387 63.8
PGR083G1696 Punica granatum HOM05D006541 ORTHO05D008471 3.3e-124 449.1 384 62.2
CiPaw.11G043400 Carya illinoinensis HOM05D006541 ORTHO05D008471 5.6e-124 448.4 389 64.0
Psat4g051480 Pisum sativum HOM05D006541 ORTHO05D008471 1.3e-123 447.2 409 62.3
THA.LOC104821445 Tarenaya hassleriana HOM05D006541 ORTHO05D008471 1.6e-123 446.8 401 60.8
Ciclev10020397m.g Citrus clementina HOM05D006541 ORTHO05D008471 3.7e-123 445.7 409 61.9
Rhsim08G0155500 Rhododendron simsii HOM05D006541 ORTHO05D008471 3.7e-123 445.7 353 68.0
TWI60G0844 Tripterygium wilfordii HOM05D006541 ORTHO05D008471 3.7e-123 445.7 404 60.9
Actinidia37633 Actinidia chinensis HOM05D006541 ORTHO05D008471 1.1e-122 444.1 376 65.4
MBI05_g08285_MAGBIO Magnolia biondii HOM05D006541 ORTHO05D008471 3.1e-122 442.6 387 62.0
Lalb_Chr07g0178001 Lupinus albus HOM05D006541 ORTHO05D008471 6.9e-122 441.4 396 62.6
AUR62021701 Chenopodium quinoa HOM05D006541 ORTHO05D008471 5.8e-121 438.3 382 62.6
VMungo1215G1397 Vigna mungo HOM05D006541 ORTHO05D008471 7.6e-121 438.0 398 62.1
Ca_21826_v3 Cicer arietinum L. HOM05D006541 ORTHO05D008471 9.9e-121 437.6 411 60.6
Phvul.003G190700 Phaseolus vulgaris HOM05D006541 ORTHO05D008471 1.3e-120 437.2 398 62.1
Prupe.5G192200 Prunus persica HOM05D006541 ORTHO05D008471 1.3e-120 437.2 390 62.6
Hund02657 Selenicereus undatus HOM05D006541 ORTHO05D008471 1.3e-120 437.2 382 62.8
TAR371G1054 Trochodendron aralioides HOM05D006541 ORTHO05D008471 1.7e-120 436.8 383 61.9
AUR62008395 Chenopodium quinoa HOM05D006541 ORTHO05D008471 4.9e-120 435.3 382 62.0
FAN04G2599 Fragaria x ananassa HOM05D006541 ORTHO05D008471 8.4e-120 434.5 395 60.5
Glyma.17G099300 Glycine max HOM05D006541 ORTHO05D008471 3.2e-119 432.6 398 62.1
PSO063G0566 Papaver somniferum HOM05D006541 ORTHO05D008471 3.2e-119 432.6 387 59.7
TPR.G34732 Trifolium pratense HOM05D006541 ORTHO05D008471 3.2e-119 432.6 411 60.1
ECA247G0129 Erigeron canadensis HOM05D006541 ORTHO05D008471 5.5e-119 431.8 385 61.8
Medtr4g108590 Medicago truncatula HOM05D006541 ORTHO05D008471 5.5e-119 431.8 407 60.4
Aqoxy3G03367 Aquilegia oxysepala HOM05D006541 ORTHO05D008471 7.1e-119 431.4 387 60.7
FAN18G0374 Fragaria x ananassa HOM05D006541 ORTHO05D008471 7.1e-119 431.4 398 60.3
MD14G1199100 Malus domestica HOM05D006541 ORTHO05D008471 7.1e-119 431.4 390 60.8
AL5G26900 Arabidopsis lyrata HOM05D006541 ORTHO05D008471 1.2e-118 430.6 381 61.7
BcaB01g00902 Brassica carinata HOM05D006541 ORTHO05D008471 1.6e-118 430.3 383 62.4
RcHm_v2.0_Chr7g0181151 Rosa chinensis HOM05D006541 ORTHO05D008471 2.7e-118 429.5 392 61.2
arahy.Tifrunner.gnm1.ann1.ZY6HCY Arachis hypogaea HOM05D006541 ORTHO05D008471 6.0e-118 428.3 397 59.2
CSS0042048 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 6.0e-118 428.3 392 60.7
arahy.Tifrunner.gnm1.ann1.84ES4F Arachis hypogaea HOM05D006541 ORTHO05D008471 1.0e-117 427.6 397 58.7
AT3G47610 Arabidopsis thaliana HOM05D006541 ORTHO05D008471 1.8e-117 426.8 381 61.2
CARHR156290 Cardamine hirsuta HOM05D006541 ORTHO05D008471 5.1e-117 425.2 381 60.6
FAN08G2919 Fragaria x ananassa HOM05D006541 ORTHO05D008471 6.7e-117 424.9 395 60.0
CSS0004518 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 1.1e-116 424.1 386 60.6
Sp5g14300 Schrenkiella parvula HOM05D006541 ORTHO05D008471 1.9e-116 423.3 382 61.3
A06p20010 Brassica napus HOM05D006541 ORTHO05D008471 5.6e-116 421.8 383 61.4
BraA06t25087Z Brassica rapa HOM05D006541 ORTHO05D008471 5.6e-116 421.8 383 61.4
BolC3t19470H Brassica oleracea HOM05D006541 ORTHO05D008471 7.4e-116 421.4 384 60.7
Carub.0005s1374 Capsella rubella HOM05D006541 ORTHO05D008471 1.6e-115 420.2 381 60.1
MD06G1192400 Malus domestica HOM05D006541 ORTHO05D008471 3.7e-115 419.1 416 57.9
FvH4_5g15050 Fragaria vesca HOM05D006541 ORTHO05D008471 4.8e-115 418.7 398 60.3
Thhalv10010423m.g Eutrema salsugineum HOM05D006541 ORTHO05D008471 1.1e-114 417.5 385 59.7
BcaC01g01798 Brassica carinata HOM05D006541 ORTHO05D008471 1.4e-114 417.2 384 60.4
C03p71820 Brassica napus HOM05D006541 ORTHO05D008471 1.4e-114 417.2 384 60.4
EL10Ac5g10987 Beta vulgaris HOM05D006541 ORTHO05D008471 1.2e-113 414.1 382 59.2
HPP92_016797 Vanilla planifolia HOM05D006541 ORTHO05D008471 5.8e-113 411.8 384 60.9
HPP92_016827 Vanilla planifolia HOM05D006541 ORTHO05D008471 2.9e-112 409.5 384 60.7
CANSAT25G3319 Cannabis sativa HOM05D006541 ORTHO05D008471 1.9e-111 406.8 403 56.3
Ah.11g048540 Amaranthus hybridus HOM05D006541 ORTHO05D008471 9.3e-111 404.4 382 59.9
Sc12g0006320 Simmondsia chinensis HOM05D006541 ORTHO05D008471 3.9e-109 399.1 383 60.6
CDE06G2127 Ceratophyllum demersum HOM05D006541 ORTHO05D008471 8.7e-109 397.9 396 56.3
Haze_07335 Corylus avellana HOM05D006541 ORTHO05D008471 2.5e-108 396.4 350 64.3
COL.COLO4_24520 Corchorus olitorius HOM05D000087 ORTHO05D008471 9.7e-108 394.4 393 60.6
Potri.012G068900 Populus trichocarpa HOM05D006541 ORTHO05D008471 1.3e-107 394.0 395 58.5
Sabra12G0049100 Salix brachista HOM05D006541 ORTHO05D008471 2.8e-107 392.9 460 53.5
BcaB05g23063 Brassica carinata HOM05D006541 ORTHO05D008471 1.7e-104 383.6 359 59.1
ClCG04G012330 Citrullus lanatus HOM05D006541 ORTHO05D008471 1.1e-103 380.9 355 61.1
ATR0598G034 Amborella trichopoda HOM05D006541 ORTHO05D008471 4.6e-102 375.6 382 55.0
MELO3C001974.2 Cucumis melo HOM05D006541 ORTHO05D008471 2.5e-100 369.8 363 59.0
CsaV3_1G005390 Cucumis sativus L. HOM05D006541 ORTHO05D008471 2.2e-99 366.7 348 60.3
Cpa.g.c35819 Carica papaya HOM05D006541 ORTHO05D008471 1.8e-98 363.6 364 58.2
Sed0004898 Sechium edule HOM05D006541 ORTHO05D008471 9.1e-98 361.3 339 61.1
Hma1.2p1_0104F.1_g049980 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 7.2e-95 351.7 296 67.2
Manes.06G093400 Manihot esculenta HOM05D006541 ORTHO05D008471 4.7e-94 349.0 359 58.5
Aa31LG4G16360 Aethionema arabicum HOM05D006541 ORTHO05D008471 7.4e-92 341.7 425 49.2
vmacro17549 Vaccinium macrocarpon HOM05D006541 ORTHO05D008471 4.8e-91 339.0 397 51.6
Actinidia04898 Actinidia chinensis HOM05D006541 ORTHO05D008471 2.1e-86 323.6 249 69.1
Zm00001eb312480 Zea mays HOM05D006541 ORTHO05D008471 8.2e-83 311.6 302 55.6
Pp3c16_180 Physcomitrium patens HOM05D006541 ORTHO05D003603 5.9e-73 278.9 397 43.1
Pp3c16_188 Physcomitrium patens HOM05D006541 ORTHO05D003603 5.9e-73 278.9 397 43.1
AagrBONN_evm.TU.Sc2ySwM_228.4960 Anthoceros agrestis HOM05D006541 ORTHO05D008471 1.3e-72 277.7 391 44.5
Mapoly0060s0059 Marchantia polymorpha HOM05D006541 ORTHO05D003603 6.5e-72 275.4 403 42.9
SEGI_30902 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 9.4e-71 271.6 346 47.7
Potri.003G168100 Populus trichocarpa HOM05D006541 ORTHO05D008471 3.6e-62 243.0 163 77.9
CBR_g8828 Chara braunii HOM05D003341 ORTHO05D003603 1.7e-32 144.4 384 30.7
Actinidia04899 Actinidia chinensis HOM05D006541 ORTHO05D008471 3.6e-30 136.7 115 65.2
Cpa.g.sc111.3 Carica papaya HOM05D006541 ORTHO05D008471 9.9e-28 128.6 114 62.3
SEGI_16548 Sequoiadendron giganteum HOM05D003341 ORTHO05D003603 1.2e-25 121.7 355 30.4
Os09g0413100 Oryza sativa ssp. japonica HOM05D006541 ORTHO05D008471 3.5e-25 120.2 143 48.3
Sed0007979 Sechium edule HOM05D006541 ORTHO05D008471 6.4e-19 99.4 83 61.4
Cre09.g412350 Chlamydomonas reinhardtii HOM05D003341 ORTHO05D003603 4.3e-15 86.7 193 34.7
PRCOL_00002459 Prasinoderma coloniale HOM05D006541 ORTHO05D008471 6.2e-14 82.8 147 38.8
vmacro17551 Vaccinium macrocarpon HOM05D006541 ORTHO05D000277 1.5e-12 78.2 188 35.1
MELO3C035773.2 Cucumis melo HOM05D006541 ORTHO05D008471 2.6e-12 77.4 48 70.8
CsaV3_1G005410 Cucumis sativus L. HOM05D006541 ORTHO05D008471 2.6e-12 77.4 48 70.8
Haze_07334 Corylus avellana HOM05D006541 ORTHO05D008471 1.3e-11 75.1 52 63.5
SEGI_20393 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 3.5e-09 67.0 46 63.0
FAN09G1066 Fragaria x ananassa HOM05D007752 ORTHO05D009994 7.9e-09 65.9 136 42.6
FAN14G0637 Fragaria x ananassa HOM05D006541 ORTHO05D008471 1.5e-07 61.6 90 46.7


User provided reference genes

Program Settings