Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G10900 Striga asiatica HOM05D000168 ORTHO05D013722 1.8e-69 266.2 173 100.0
SGA_v2.0_scaffold25G10893 Striga asiatica HOM05D000166 ORTHO05D013722 1.2e-20 104.0 115 54.8
SGA_v2.0_scaffold35G14102 Striga asiatica HOM05D000168 ORTHO05D001118 1.3e-14 84.0 106 51.9
Manes.02G199300 Manihot esculenta HOM05D000029 ORTHO05D006810 2.1e-09 66.6 83 42.2
Nn5g27436 Nelumbo nucifera HOM05D000029 ORTHO05D006810 8.0e-09 64.7 82 43.9
Nn5g31447 Nelumbo nucifera HOM05D000029 ORTHO05D006810 8.0e-09 64.7 82 43.9
Hund11553 Selenicereus undatus HOM05D001042 ORTHO05D006654 1.0e-08 64.3 102 42.2
CAN.G329.4 Capsicum annuum HOM05D000029 ORTHO05D008567 1.4e-08 63.9 74 41.9
FAN24G3254 Fragaria x ananassa HOM05D000168 ORTHO05D001118 1.8e-08 63.5 79 44.3
TPR.G1903 Trifolium pratense HOM05D000029 ORTHO05D006810 3.0e-08 62.8 81 44.4
A07p30320 Brassica napus HOM05D000029 ORTHO05D006810 4.0e-08 62.4 98 39.8
Glyma.01G243200 Glycine max HOM05D000168 ORTHO05D001118 4.0e-08 62.4 100 41.0
Lsat_1_v5_gn_8_79160 Lactuca sativa HOM05D000029 ORTHO05D008567 4.0e-08 62.4 97 33.0
CARHR065040 Cardamine hirsuta HOM05D000029 ORTHO05D006810 5.2e-08 62.0 99 42.4
Glyma.12G002500 Glycine max HOM05D000029 ORTHO05D006810 5.2e-08 62.0 99 41.4
Medtr4g035200 Medicago truncatula HOM05D000029 ORTHO05D006810 5.2e-08 62.0 80 41.2
Psat7g145280 Pisum sativum HOM05D000029 ORTHO05D006810 5.2e-08 62.0 99 40.4
Nitab4.5_0003018g0110 Nicotiana tabacum HOM05D000570 ORTHO05D002740 6.8e-08 61.6 56 48.2
Nitab4.5_0014079g0010 Nicotiana tabacum HOM05D000570 ORTHO05D002740 6.8e-08 61.6 56 48.2
C06p35070 Brassica napus HOM05D000029 ORTHO05D006810 1.2e-07 60.8 76 44.7
BolC6t38611H Brassica oleracea HOM05D000029 ORTHO05D006810 1.2e-07 60.8 76 44.7
BraA07t30669Z Brassica rapa HOM05D000029 ORTHO05D006810 1.2e-07 60.8 98 38.8
Glyma.04G174700 Glycine max HOM05D000094 ORTHO05D002063 1.2e-07 60.8 98 36.7
MBI06_g37371_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D006810 1.2e-07 60.8 103 35.9
MBI15_g33458_MAGBIO Magnolia biondii HOM05D000166 ORTHO05D000812 1.2e-07 60.8 56 48.2
Gohir.A05G251900 Gossypium hirsutum HOM05D000029 ORTHO05D006810 1.5e-07 60.5 95 38.9
Gohir.D05G274500 Gossypium hirsutum HOM05D000029 ORTHO05D006810 1.5e-07 60.5 74 41.9
Peaxi162Scf00268g00911 Petunia axillaris HOM05D000029 ORTHO05D006810 1.5e-07 60.5 98 38.8
A07p38300 Brassica napus HOM05D000029 ORTHO05D006810 2.0e-07 60.1 102 37.3
FvH4_2g17150 Fragaria vesca HOM05D000168 ORTHO05D025414 2.0e-07 60.1 79 43.0
Medtr5g005170 Medicago truncatula HOM05D000168 ORTHO05D001118 2.0e-07 60.1 102 37.3
TPR.G29234 Trifolium pratense HOM05D000168 ORTHO05D000811 2.0e-07 60.1 107 36.4
Lalb_Chr12g0196681 Lupinus albus HOM05D000094 ORTHO05D002063 2.6e-07 59.7 84 41.7
Manes.18G107100 Manihot esculenta HOM05D000029 ORTHO05D006810 2.6e-07 59.7 76 43.4
Nitab4.5_0000452g0160 Nicotiana tabacum HOM05D000029 ORTHO05D008567 2.6e-07 59.7 74 41.9
Thecc.08G194700 Theobroma cacao HOM05D000029 ORTHO05D006810 2.6e-07 59.7 100 36.0
GSVIVG01013787001 Vitis vinifera HOM05D000168 ORTHO05D000811 2.6e-07 59.7 97 38.1
BcaB03g14962 Brassica carinata HOM05D000029 ORTHO05D006810 3.4e-07 59.3 76 43.4
CAN.G1647.7 Capsicum annuum HOM05D000029 ORTHO05D006810 3.4e-07 59.3 103 35.0
Cpa.g.sc177.22 Carica papaya HOM05D000029 ORTHO05D001548 3.4e-07 59.3 77 41.6
DCAR_007071 Daucus carota HOM05D000168 ORTHO05D000811 3.4e-07 59.3 96 35.4
Gohir.A05G272300 Gossypium hirsutum HOM05D000029 ORTHO05D006810 3.4e-07 59.3 78 39.7
Nitab4.5_0000603g0020 Nicotiana tabacum HOM05D000029 ORTHO05D008567 3.4e-07 59.3 74 40.5
Phvul.002G251400 Phaseolus vulgaris HOM05D000021 ORTHO05D000010 3.4e-07 59.3 80 40.0
TPR.G15940 Trifolium pratense HOM05D000168 ORTHO05D000811 3.4e-07 59.3 101 35.6
Carub.0002s1899 Capsella rubella HOM05D000029 ORTHO05D006810 4.4e-07 58.9 76 43.4
Ca_19671_v3 Cicer arietinum L. HOM05D000029 ORTHO05D006810 4.4e-07 58.9 77 45.5
Haze_06199 Corylus avellana HOM05D000168 ORTHO05D009282 4.4e-07 58.9 101 31.7
Eucgr.K03279 Eucalyptus grandis HOM05D001592 ORTHO05D001533 4.4e-07 58.9 99 32.3
FAN21G1233 Fragaria x ananassa HOM05D000168 ORTHO05D029487 4.4e-07 58.9 96 36.5
Gorai.009G287800 Gossypium raimondii HOM05D000029 ORTHO05D006810 4.4e-07 58.9 74 40.5
Pp3c5_8630 Physcomitrium patens HOM05D001042 ORTHO05D006654 4.4e-07 58.9 100 36.0
Pp3c6_14960 Physcomitrium patens HOM05D001042 ORTHO05D006654 4.4e-07 58.9 73 43.8
RcHm_v2.0_Chr7g0226871 Rosa chinensis HOM05D000029 ORTHO05D006810 4.4e-07 58.9 80 40.0
Sed0010641 Sechium edule HOM05D000570 ORTHO05D002740 4.4e-07 58.9 56 42.9
Lj1A1173T34 Lonicera japonica HOM05D000168 ORTHO05D009282 5.7e-07 58.5 106 32.1
Lj3g0025903 Lotus japonicus HOM05D000029 ORTHO05D006810 5.7e-07 58.5 93 38.7
Potri.017G108000 Populus trichocarpa HOM05D000168 ORTHO05D000811 5.7e-07 58.5 103 35.0
Potri.019G078400 Populus trichocarpa HOM05D000029 ORTHO05D006810 5.7e-07 58.5 83 37.3
Sabra19G0089400 Salix brachista HOM05D000029 ORTHO05D006810 5.7e-07 58.5 101 34.7
BcaC08g46665 Brassica carinata HOM05D000029 ORTHO05D006810 7.5e-07 58.2 76 42.1
C06p46360 Brassica napus HOM05D000029 ORTHO05D006810 7.5e-07 58.2 76 42.1
BolC6t39682H Brassica oleracea HOM05D000029 ORTHO05D006810 7.5e-07 58.2 76 42.1
CAN.G996.11 Capsicum annuum HOM05D000570 ORTHO05D002740 7.5e-07 58.2 56 42.9
CDE07G1309 Ceratophyllum demersum HOM05D000510 ORTHO05D001548 7.5e-07 58.2 102 38.2
Ca_20749_v3 Cicer arietinum L. HOM05D000168 ORTHO05D000811 7.5e-07 58.2 104 36.5
Haze_03799 Corylus avellana HOM05D002919 ORTHO05D003327 7.5e-07 58.2 99 35.4
Glyma.13G050200 Glycine max HOM05D000168 ORTHO05D000811 7.5e-07 58.2 104 35.6
Hund27129 Selenicereus undatus HOM05D000029 ORTHO05D006810 7.5e-07 58.2 82 39.0
Sopen07g028440 Solanum pennellii HOM05D000570 ORTHO05D002740 7.5e-07 58.2 56 42.9
THA.LOC104809579 Tarenaya hassleriana HOM05D000168 ORTHO05D000811 7.5e-07 58.2 96 34.4
Actinidia37660 Actinidia chinensis HOM05D000094 ORTHO05D002063 9.8e-07 57.8 107 35.5
Ah.12g058000 Amaranthus hybridus HOM05D001042 ORTHO05D006654 9.8e-07 57.8 74 44.6
CSS0022711 Camellia sinensis var. sinensis HOM05D000168 ORTHO05D000811 9.8e-07 57.8 102 34.3
Eucgr.B03306 Eucalyptus grandis HOM05D000168 ORTHO05D000811 9.8e-07 57.8 98 35.7
Phvul.011G003200 Phaseolus vulgaris HOM05D000029 ORTHO05D006810 9.8e-07 57.8 77 44.2
Solyc07g054500.4 Solanum lycopersicum HOM05D000570 ORTHO05D002740 9.8e-07 57.8 56 42.9
Aa31LG2G9820 Aethionema arabicum HOM05D000168 ORTHO05D000811 1.3e-06 57.4 101 35.6
Thhalv10023342m.g Eutrema salsugineum HOM05D000168 ORTHO05D000811 1.3e-06 57.4 98 34.7
Lalb_Chr19g0140451 Lupinus albus HOM05D000029 ORTHO05D006810 1.3e-06 57.4 75 44.0
Prupe.1G447000 Prunus persica HOM05D000029 ORTHO05D008509 1.3e-06 57.4 75 37.3
Thecc.02G254900 Theobroma cacao HOM05D000168 ORTHO05D000811 1.3e-06 57.4 103 34.0
TPR.G28974 Trifolium pratense HOM05D000021 ORTHO05D008832 1.3e-06 57.4 78 39.7
arahy.Tifrunner.gnm1.ann1.D508T1 Arachis hypogaea HOM05D000168 ORTHO05D000811 1.7e-06 57.0 97 38.1
arahy.Tifrunner.gnm1.ann1.WXE6ZC Arachis hypogaea HOM05D000168 ORTHO05D000811 1.7e-06 57.0 97 38.1
BraA07t31394Z Brassica rapa HOM05D000029 ORTHO05D006810 1.7e-06 57.0 76 40.8
Carub.0002s0453 Capsella rubella HOM05D000168 ORTHO05D000811 1.7e-06 57.0 96 34.4
AUR62004589 Chenopodium quinoa HOM05D000029 ORTHO05D006810 1.7e-06 57.0 82 39.0
FvH4_5g31430 Fragaria vesca HOM05D000029 ORTHO05D006810 1.7e-06 57.0 77 39.0
Gohir.A10G035800 Gossypium hirsutum HOM05D000168 ORTHO05D009282 1.7e-06 57.0 80 37.5
Gohir.D05G253700 Gossypium hirsutum HOM05D000029 ORTHO05D006810 1.7e-06 57.0 95 37.9
Gorai.009G265300 Gossypium raimondii HOM05D000029 ORTHO05D006810 1.7e-06 57.0 95 37.9
Lsat_1_v5_gn_6_42540 Lactuca sativa HOM05D000071 ORTHO05D000029 1.7e-06 57.0 111 35.1
MD07G1141200 Malus domestica HOM05D000071 ORTHO05D000029 1.7e-06 57.0 81 38.3
Mapoly0006s0308 Marchantia polymorpha HOM05D000029 ORTHO05D006280 1.7e-06 57.0 101 34.7
VMungo0251G0023 Vigna mungo HOM05D000021 ORTHO05D000010 1.7e-06 57.0 78 42.3
Zm00001eb360180 Zea mays HOM05D000761 ORTHO05D001062 1.7e-06 57.0 79 40.5
Atru.chr11.2073 Acer truncatum HOM05D000168 ORTHO05D000811 2.2e-06 56.6 103 34.0
Actinidia09613 Actinidia chinensis HOM05D000168 ORTHO05D001118 2.2e-06 56.6 106 36.8
Aqoxy3G01122 Aquilegia oxysepala HOM05D000168 ORTHO05D000811 2.2e-06 56.6 97 35.1
EL10Ac1g00147 Beta vulgaris HOM05D000029 ORTHO05D006810 2.2e-06 56.6 74 41.9
Cfa006953 Carpinus fangiana HOM05D002919 ORTHO05D003327 2.2e-06 56.6 94 36.2
CiPaw.16G077900 Carya illinoinensis HOM05D000166 ORTHO05D000812 2.2e-06 56.6 58 41.4
Eucgr.B00412 Eucalyptus grandis HOM05D000094 ORTHO05D002063 2.2e-06 56.6 77 44.2
MBI16_g05470_MAGBIO Magnolia biondii HOM05D000168 ORTHO05D000811 2.2e-06 56.6 95 36.8
Medtr1g110280 Medicago truncatula HOM05D000033 ORTHO05D004067 2.2e-06 56.6 100 37.0
Phvul.002G064400 Phaseolus vulgaris HOM05D000168 ORTHO05D000811 2.2e-06 56.6 103 35.0
Sed0016135 Sechium edule HOM05D000570 ORTHO05D002740 2.2e-06 56.6 56 41.1
TAR627G0044 Trochodendron aralioides HOM05D000168 ORTHO05D009282 2.2e-06 56.6 108 30.6
BcaC06g31821 Brassica carinata HOM05D000168 ORTHO05D000811 2.8e-06 56.2 95 33.7
ECA240G4311 Erigeron canadensis HOM05D000021 ORTHO05D000010 2.8e-06 56.2 95 34.7
FvH4_3g18100 Fragaria vesca HOM05D000168 ORTHO05D013722 2.8e-06 56.2 96 38.5
FAN16G0773 Fragaria x ananassa HOM05D000168 ORTHO05D013722 2.8e-06 56.2 96 38.5
Glyma.05G170600 Glycine max HOM05D000021 ORTHO05D000010 2.8e-06 56.2 80 40.0
Phvul.004G046800 Phaseolus vulgaris HOM05D000168 ORTHO05D000811 2.8e-06 56.2 90 38.9
Sabra17G0090500 Salix brachista HOM05D000168 ORTHO05D000811 2.8e-06 56.2 102 35.3
SalBow8G5009 Salvia bowleyana HOM05D000033 ORTHO05D004067 2.8e-06 56.2 93 33.3
Sed0015355 Sechium edule HOM05D000168 ORTHO05D001351 2.8e-06 56.2 98 35.7
PGSC0003DMG400018367 Solanum tuberosum HOM05D000570 ORTHO05D002740 2.8e-06 56.2 56 42.9
AUR62019157 Chenopodium quinoa HOM05D002919 ORTHO05D003327 3.7e-06 55.8 70 44.3
ECA240G4601 Erigeron canadensis HOM05D000004 ORTHO05D000002 3.7e-06 55.8 77 42.9
Eucgr.E02764 Eucalyptus grandis HOM05D000168 ORTHO05D009282 3.7e-06 55.8 103 31.1
FAN18G2054 Fragaria x ananassa HOM05D000029 ORTHO05D006810 3.7e-06 55.8 78 38.5
Glyma.06G190000 Glycine max HOM05D000094 ORTHO05D002063 3.7e-06 55.8 97 36.1
MD15G1058800 Malus domestica HOM05D000033 ORTHO05D004067 3.7e-06 55.8 74 43.2
Nitab4.5_0000303g0230 Nicotiana tabacum HOM05D000029 ORTHO05D006810 3.7e-06 55.8 77 39.0
PSO170G3814 Papaver somniferum HOM05D002919 ORTHO05D003327 3.7e-06 55.8 73 42.5
SEGI_39446 Sequoiadendron giganteum HOM05D000166 ORTHO05D000812 3.7e-06 55.8 90 33.3
Sc18g0004430 Simmondsia chinensis HOM05D000166 ORTHO05D000812 3.7e-06 55.8 61 39.3
TAR633G0185 Trochodendron aralioides HOM05D000029 ORTHO05D008567 3.7e-06 55.8 77 37.7
AagrBONN_evm.TU.Sc2ySwM_228.5156 Anthoceros agrestis HOM05D000166 ORTHO05D000812 4.9e-06 55.5 76 35.5
BcaC08g45722 Brassica carinata HOM05D000029 ORTHO05D006810 4.9e-06 55.5 76 42.1
Duzib251G0448 Durio zibethinus HOM05D000168 ORTHO05D000811 4.9e-06 55.5 103 34.0
Eucgr.H02547 Eucalyptus grandis HOM05D000168 ORTHO05D000811 4.9e-06 55.5 101 33.7
Lj8A733T35 Lonicera japonica HOM05D000168 ORTHO05D001118 4.9e-06 55.5 73 43.8
Lalb_Chr17g0342171 Lupinus albus HOM05D000033 ORTHO05D004067 4.9e-06 55.5 68 45.6
MBI15_g18194_MAGBIO Magnolia biondii HOM05D000168 ORTHO05D000811 4.9e-06 55.5 95 35.8
Medtr6g016495 Medicago truncatula HOM05D000168 ORTHO05D000811 4.9e-06 55.5 104 33.7
Peaxi162Scf00128g01747 Petunia axillaris HOM05D000168 ORTHO05D001118 4.9e-06 55.5 103 35.9
Pp3c11_18980 Physcomitrium patens HOM05D002919 ORTHO05D003327 4.9e-06 55.5 101 35.6
SalBow8G3462 Salvia bowleyana HOM05D000033 ORTHO05D004067 4.9e-06 55.5 68 39.7
SalBow8G4516 Salvia bowleyana HOM05D000033 ORTHO05D004067 4.9e-06 55.5 68 39.7
SGA_v2.0_scaffold38G14963 Striga asiatica HOM05D000033 ORTHO05D004067 4.9e-06 55.5 95 29.5
TAR628G1096 Trochodendron aralioides HOM05D000029 ORTHO05D006810 4.9e-06 55.5 104 34.6
HPP92_007855 Vanilla planifolia HOM05D000168 ORTHO05D001118 4.9e-06 55.5 100 36.0
GSVIVG01037864001 Vitis vinifera HOM05D000168 ORTHO05D001118 4.9e-06 55.5 74 43.2
ClCG08G008670 Citrullus lanatus HOM05D000029 ORTHO05D006810 6.3e-06 55.1 81 40.7
COL.COLO4_05719 Corchorus olitorius HOM05D000021 ORTHO05D000010 6.3e-06 55.1 101 35.6
MELO3C017153.2 Cucumis melo HOM05D000094 ORTHO05D002063 6.3e-06 55.1 78 41.0
Dinv37812 Davidia involucrata HOM05D000570 ORTHO05D001174 6.3e-06 55.1 57 49.1
ECA232G2023 Erigeron canadensis HOM05D000029 ORTHO05D002544 6.3e-06 55.1 82 32.9
FAN04G0349 Fragaria x ananassa HOM05D000029 ORTHO05D006810 6.3e-06 55.1 77 37.7
FAN13G2135 Fragaria x ananassa HOM05D000029 ORTHO05D006810 6.3e-06 55.1 77 37.7
Gohir.D05G307400 Gossypium hirsutum HOM05D000168 ORTHO05D000811 6.3e-06 55.1 105 35.2
Gorai.009G340400 Gossypium raimondii HOM05D000021 ORTHO05D000010 6.3e-06 55.1 78 43.6
Lj5g0007057 Lotus japonicus HOM05D000033 ORTHO05D001688 6.3e-06 55.1 99 31.3
Nitab4.5_0001105g0230 Nicotiana tabacum HOM05D000168 ORTHO05D001118 6.3e-06 55.1 74 44.6
Nitab4.5_0004685g0080 Nicotiana tabacum HOM05D000168 ORTHO05D001118 6.3e-06 55.1 74 44.6
Oeu001726.1 Olea europaea HOM05D000168 ORTHO05D000811 6.3e-06 55.1 105 35.2
Os01g0171000 Oryza sativa ssp. japonica HOM05D000168 ORTHO05D000811 6.3e-06 55.1 100 33.0
PSO541G4230 Papaver somniferum HOM05D000168 ORTHO05D001118 6.3e-06 55.1 74 43.2
SEGI_08682 Sequoiadendron giganteum HOM05D000168 ORTHO05D001351 6.3e-06 55.1 74 45.9
Zm00001eb336730 Zea mays HOM05D000168 ORTHO05D000811 6.3e-06 55.1 89 38.2
Ah.11g048770 Amaranthus hybridus HOM05D000094 ORTHO05D002063 8.3e-06 54.7 97 39.2
AT1G72180 Arabidopsis thaliana HOM05D000029 ORTHO05D006810 8.3e-06 54.7 76 43.4
CANSAT25G0280 Cannabis sativa HOM05D000029 ORTHO05D006810 8.3e-06 54.7 77 41.6
CDE05G1633 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 8.3e-06 54.7 64 37.5
DCAR_014393 Daucus carota HOM05D000029 ORTHO05D006810 8.3e-06 54.7 76 39.5
DCAR_023965 Daucus carota HOM05D000166 ORTHO05D001348 8.3e-06 54.7 76 40.8
DCAR_026532 Daucus carota HOM05D000168 ORTHO05D000811 8.3e-06 54.7 109 33.0
Glyma.08G128900 Glycine max HOM05D000021 ORTHO05D000010 8.3e-06 54.7 80 38.8
HanXRQChr05g0132251 Helianthus annuus HOM05D000029 ORTHO05D008567 8.3e-06 54.7 78 34.6
HanXRQChr09g0260581 Helianthus annuus HOM05D002919 ORTHO05D003327 8.3e-06 54.7 104 36.5
Lj5g0020877 Lotus japonicus HOM05D000033 ORTHO05D001688 8.3e-06 54.7 97 34.0
MBI10_g27993_MAGBIO Magnolia biondii HOM05D000168 ORTHO05D000811 8.3e-06 54.7 103 31.1
Mapoly0077s0067 Marchantia polymorpha HOM05D000166 ORTHO05D001348 8.3e-06 54.7 110 34.5
Nn1g04488 Nelumbo nucifera HOM05D000168 ORTHO05D009282 8.3e-06 54.7 82 37.8
Nitab4.5_0000338g0050 Nicotiana tabacum HOM05D000168 ORTHO05D000811 8.3e-06 54.7 105 34.3
Oeu035597.1 Olea europaea HOM05D000033 ORTHO05D004067 8.3e-06 54.7 69 39.1
Phvul.009G046600 Phaseolus vulgaris HOM05D000021 ORTHO05D000010 8.3e-06 54.7 77 40.3
Prupe.1G411300 Prunus persica HOM05D000033 ORTHO05D004067 8.3e-06 54.7 75 42.7
SGA_v2.0_scaffold295G47540 Striga asiatica HOM05D000071 ORTHO05D000029 8.3e-06 54.7 102 32.4
vmacro19429 Vaccinium macrocarpon HOM05D000094 ORTHO05D002063 8.3e-06 54.7 97 36.1


User provided reference genes

Program Settings