Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G10893 Striga asiatica HOM05D000166 ORTHO05D013722 2.2e-93 345.9 207 100.0
SGA_v2.0_scaffold25G10900 Striga asiatica HOM05D000168 ORTHO05D013722 6.4e-21 105.1 115 54.8
SGA_v2.0_scaffold35G14102 Striga asiatica HOM05D000168 ORTHO05D001118 7.6e-14 81.6 137 43.8
Rhsim04G0119200 Rhododendron simsii HOM05D000166 ORTHO05D000812 1.2e-08 64.3 91 38.5
Cpa.g.sc31.101 Carica papaya HOM05D000166 ORTHO05D000812 4.7e-08 62.4 73 46.6
CAN.G1018.5 Capsicum annuum HOM05D000166 ORTHO05D000812 8.1e-08 61.6 106 35.8
Cc03_g15230 Coffea canephora HOM05D000166 ORTHO05D000812 8.1e-08 61.6 106 34.9
Oeu034719.1 Olea europaea HOM05D000166 ORTHO05D000812 8.1e-08 61.6 77 42.9
CSS0016627 Camellia sinensis var. sinensis HOM05D000166 ORTHO05D000812 1.4e-07 60.8 73 43.8
CSS0033200 Camellia sinensis var. sinensis HOM05D000166 ORTHO05D000812 1.4e-07 60.8 73 43.8
MD12G1196600 Malus domestica HOM05D000166 ORTHO05D000812 2.4e-07 60.1 106 32.1
vmacro08966 Vaccinium macrocarpon HOM05D000166 ORTHO05D000812 2.4e-07 60.1 73 42.5
arahy.Tifrunner.gnm1.ann1.IFP09X Arachis hypogaea HOM05D000166 ORTHO05D000812 3.1e-07 59.7 89 36.0
Dinv25392 Davidia involucrata HOM05D000166 ORTHO05D000812 3.1e-07 59.7 93 35.5
Glyma.08G266100 Glycine max HOM05D000166 ORTHO05D000812 3.1e-07 59.7 109 32.1
Gohir.D02G103000 Gossypium hirsutum HOM05D000166 ORTHO05D000812 3.1e-07 59.7 73 43.8
MBI15_g33458_MAGBIO Magnolia biondii HOM05D000166 ORTHO05D000812 3.1e-07 59.7 81 38.3
Solyc10g085670.2 Solanum lycopersicum HOM05D000166 ORTHO05D000812 3.1e-07 59.7 74 43.2
Sopen10g035090 Solanum pennellii HOM05D000166 ORTHO05D000812 3.1e-07 59.7 74 43.2
PGSC0003DMG400008403 Solanum tuberosum HOM05D000166 ORTHO05D000812 3.1e-07 59.7 74 43.2
Ah.09g233780 Amaranthus hybridus HOM05D000166 ORTHO05D000812 4.0e-07 59.3 55 49.1
Dinv25390 Davidia involucrata HOM05D000166 ORTHO05D000812 4.0e-07 59.3 93 35.5
Glyma.16G101800 Glycine max HOM05D000166 ORTHO05D000812 4.0e-07 59.3 109 32.1
Oeu001225.1 Olea europaea HOM05D000166 ORTHO05D000812 4.0e-07 59.3 77 41.6
CiPaw.16G077700 Carya illinoinensis HOM05D000166 ORTHO05D000812 5.3e-07 58.9 73 42.5
Gorai.005G116800 Gossypium raimondii HOM05D000166 ORTHO05D000812 5.3e-07 58.9 73 42.5
Lalb_Chr16g0391991 Lupinus albus HOM05D000166 ORTHO05D000812 5.3e-07 58.9 109 33.0
Thecc.08G166400 Theobroma cacao HOM05D000166 ORTHO05D000812 5.3e-07 58.9 73 42.5
arahy.Tifrunner.gnm1.ann1.UZD152 Arachis hypogaea HOM05D000166 ORTHO05D000812 6.9e-07 58.5 89 34.8
BolC7t42961H Brassica oleracea HOM05D001855 ORTHO05D002493 6.9e-07 58.5 114 33.3
Phvul.003G273700 Phaseolus vulgaris HOM05D000166 ORTHO05D000812 6.9e-07 58.5 109 31.2
BcaC06g34811 Brassica carinata HOM05D000033 ORTHO05D002493 9.0e-07 58.2 114 33.3
C07p24400 Brassica napus HOM05D001855 ORTHO05D002493 9.0e-07 58.2 114 33.3
Psat4g111440 Pisum sativum HOM05D000166 ORTHO05D000812 9.0e-07 58.2 109 32.1
Gohir.A02G087900 Gossypium hirsutum HOM05D000166 ORTHO05D000812 1.2e-06 57.8 73 42.5
VMungo0251G0955 Vigna mungo HOM05D000166 ORTHO05D000812 1.2e-06 57.8 109 31.2
CiPaw.16G077900 Carya illinoinensis HOM05D000166 ORTHO05D000812 1.5e-06 57.4 55 50.9
CiPaw.16G078200 Carya illinoinensis HOM05D000166 ORTHO05D000812 2.0e-06 57.0 73 43.8
AUR62016252 Chenopodium quinoa HOM05D000166 ORTHO05D000812 2.0e-06 57.0 73 41.1
AUR62021796 Chenopodium quinoa HOM05D000166 ORTHO05D000812 2.0e-06 57.0 73 41.1
TPR.G6137 Trifolium pratense HOM05D000166 ORTHO05D000812 2.0e-06 57.0 109 32.1
TAR624G1112 Trochodendron aralioides HOM05D000166 ORTHO05D000812 2.0e-06 57.0 55 49.1
Thhalv10003700m.g Eutrema salsugineum HOM05D000033 ORTHO05D002493 2.6e-06 56.6 93 35.5
HanXRQChr02g0052741 Helianthus annuus HOM05D000166 ORTHO05D000812 2.6e-06 56.6 77 40.3
Manes.08G165600 Manihot esculenta HOM05D000166 ORTHO05D000812 2.6e-06 56.6 105 34.3
Aa31LG4G1350 Aethionema arabicum HOM05D000166 ORTHO05D000812 3.4e-06 56.2 77 37.7
CARHR276500 Cardamine hirsuta HOM05D000094 ORTHO05D002063 3.4e-06 56.2 85 35.3
Ca_12115_v3 Cicer arietinum L. HOM05D000033 ORTHO05D007591 3.4e-06 56.2 77 41.6
Ca_30152_v3 Cicer arietinum L. HOM05D000033 ORTHO05D007591 3.4e-06 56.2 77 41.6
Ciclev10024610m.g Citrus clementina HOM05D000021 ORTHO05D000010 3.4e-06 56.2 92 38.0
DCAR_001957 Daucus carota HOM05D000166 ORTHO05D000812 3.4e-06 56.2 74 39.2
Duzib116G0021 Durio zibethinus HOM05D000166 ORTHO05D000812 3.4e-06 56.2 73 41.1
Medtr8g070880 Medicago truncatula HOM05D000166 ORTHO05D000812 3.4e-06 56.2 73 41.1
QL06p053582 Quercus lobata HOM05D000166 ORTHO05D000812 3.4e-06 56.2 73 39.7
Sed0018232 Sechium edule HOM05D000166 ORTHO05D000812 3.4e-06 56.2 55 49.1
Sed0025301 Sechium edule HOM05D000166 ORTHO05D000812 3.4e-06 56.2 77 39.0
EL10As7g23813 Beta vulgaris HOM05D000166 ORTHO05D000812 4.4e-06 55.8 55 47.3
A07p16680 Brassica napus HOM05D001855 ORTHO05D002493 4.4e-06 55.8 114 31.6
FAN04G2267 Fragaria x ananassa HOM05D000071 ORTHO05D000029 4.4e-06 55.8 77 40.3
Peaxi162Scf00007g02852 Petunia axillaris HOM05D000570 ORTHO05D002740 4.4e-06 55.8 60 40.0
BraA07t29392Z Brassica rapa HOM05D001855 ORTHO05D002493 5.8e-06 55.5 114 31.6
HanXRQChr02g0052731 Helianthus annuus HOM05D000166 ORTHO05D000812 5.8e-06 55.5 73 41.1
Os05g0305900 Oryza sativa ssp. japonica HOM05D000166 ORTHO05D000812 5.8e-06 55.5 56 48.2
SalBow7G4069 Salvia bowleyana HOM05D000021 ORTHO05D000010 5.8e-06 55.5 114 29.8
Sc18g0004430 Simmondsia chinensis HOM05D000166 ORTHO05D000812 5.8e-06 55.5 74 37.8
Atru.chr8.1247 Acer truncatum HOM05D000166 ORTHO05D000812 7.6e-06 55.1 73 43.8
Cc01_g08200 Coffea canephora HOM05D000166 ORTHO05D000812 7.6e-06 55.1 55 45.5
Eucgr.D01865 Eucalyptus grandis HOM05D000761 ORTHO05D003834 7.6e-06 55.1 86 36.0
Hund22178 Selenicereus undatus HOM05D000166 ORTHO05D000812 7.6e-06 55.1 77 36.4
THA.LOC104812406 Tarenaya hassleriana HOM05D000166 ORTHO05D000812 7.6e-06 55.1 73 38.4
AL8G44050 Arabidopsis lyrata HOM05D000033 ORTHO05D002493 9.9e-06 54.7 75 40.0
CiPaw.15G109700 Carya illinoinensis HOM05D000166 ORTHO05D000812 9.9e-06 54.7 78 38.5
HanXRQChr09g0247821 Helianthus annuus HOM05D000166 ORTHO05D000812 9.9e-06 54.7 55 50.9
Nitab4.5_0003018g0110 Nicotiana tabacum HOM05D000570 ORTHO05D002740 9.9e-06 54.7 60 43.3
Nitab4.5_0014079g0010 Nicotiana tabacum HOM05D000570 ORTHO05D002740 9.9e-06 54.7 60 43.3
Potri.008G125600 Populus trichocarpa HOM05D000166 ORTHO05D000812 9.9e-06 54.7 55 47.3
TWI09G0049 Tripterygium wilfordii HOM05D000166 ORTHO05D000812 9.9e-06 54.7 55 47.3


User provided reference genes

Program Settings