Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G10883 Striga asiatica HOM05D006327 ORTHO05D007952 1.2e-140 503.4 302 100.0
SGA_v2.0_scaffold56G20076 Striga asiatica HOM05D006327 ORTHO05D007952 1.3e-78 297.4 364 57.7
Migut.I00102 Erythranthe guttata HOM05D006327 ORTHO05D007952 1.2e-57 227.6 358 46.4
CSS0041426 Camellia sinensis var. sinensis HOM05D006327 ORTHO05D007952 7.6e-39 165.2 381 39.4
Actinidia34971 Actinidia chinensis HOM05D006327 ORTHO05D007952 2.2e-38 163.7 371 40.7
vmacro16576 Vaccinium macrocarpon HOM05D006327 ORTHO05D007952 7.1e-37 158.7 357 40.6
Gohir.A13G087700 Gossypium hirsutum HOM05D006327 ORTHO05D007952 9.3e-37 158.3 356 38.8
Thecc.K0000500 Theobroma cacao HOM05D006327 ORTHO05D007952 1.2e-36 157.9 352 40.6
Gohir.D13G092100 Gossypium hirsutum HOM05D006327 ORTHO05D007952 1.6e-36 157.5 356 38.8
Gorai.010G139000 Gossypium raimondii HOM05D006327 ORTHO05D007952 4.6e-36 156.0 356 38.5
Ciclev10020740m.g Citrus clementina HOM05D006327 ORTHO05D007952 1.3e-35 154.5 364 36.3
Peaxi162Scf00689g00562 Petunia axillaris HOM05D006327 ORTHO05D007952 1.5e-34 151.0 365 38.1
DCAR_021548 Daucus carota HOM05D006327 ORTHO05D007952 4.3e-34 149.4 348 36.5
Nitab4.5_0000003g0110 Nicotiana tabacum HOM05D006327 ORTHO05D007952 4.3e-34 149.4 354 41.2
Cfa019028 Carpinus fangiana HOM05D006327 ORTHO05D007952 5.6e-34 149.1 362 36.2
DCAR_016525 Daucus carota HOM05D006327 ORTHO05D007952 2.1e-33 147.1 344 37.5
Nitab4.5_0000758g0030 Nicotiana tabacum HOM05D006327 ORTHO05D007952 2.1e-33 147.1 350 42.3
Lj9A456G27 Lonicera japonica HOM05D006327 ORTHO05D007952 4.8e-33 146.0 370 36.2
Prupe.5G183400 Prunus persica HOM05D006327 ORTHO05D007952 8.1e-33 145.2 370 35.7
TAR629G2492 Trochodendron aralioides HOM05D006327 ORTHO05D007952 1.4e-32 144.4 383 39.2
Haze_07403 Corylus avellana HOM05D006327 ORTHO05D007952 1.8e-32 144.1 365 38.9
Duzib205G1023 Durio zibethinus HOM05D006327 ORTHO05D007952 4.0e-32 142.9 356 39.6
FAN08G2893 Fragaria x ananassa HOM05D006327 ORTHO05D007952 5.3e-32 142.5 370 35.7
Glyma.06G188300 Glycine max HOM05D006327 ORTHO05D007952 5.3e-32 142.5 354 35.0
MD06G1184600 Malus domestica HOM05D006327 ORTHO05D007952 5.3e-32 142.5 369 35.0
FvH4_5g15910 Fragaria vesca HOM05D006327 ORTHO05D007952 6.9e-32 142.1 360 37.8
FAN04G1419 Fragaria x ananassa HOM05D006327 ORTHO05D007952 6.9e-32 142.1 360 35.0
RcHm_v2.0_Chr7g0180141 Rosa chinensis HOM05D006327 ORTHO05D007952 2.0e-31 140.6 377 34.2
FAN13G1795 Fragaria x ananassa HOM05D006327 ORTHO05D007952 2.6e-31 140.2 375 34.7
Hma1.2p1_0572F.1_g181140 Hydrangea macrophylla HOM05D006327 ORTHO05D007952 2.6e-31 140.2 363 38.3
Phvul.009G183700 Phaseolus vulgaris HOM05D006327 ORTHO05D007952 5.8e-31 139.0 369 35.8
TPR.G11929 Trifolium pratense HOM05D006327 ORTHO05D007952 5.8e-31 139.0 355 39.2
GSVIVG01008091001 Vitis vinifera HOM05D006327 ORTHO05D007952 9.9e-31 138.3 367 35.7
QL10p014464 Quercus lobata HOM05D006327 ORTHO05D007952 2.2e-30 137.1 359 34.3
VMungo1309G2881 Vigna mungo HOM05D006327 ORTHO05D007952 2.9e-30 136.7 366 34.4
Glyma.04G176800 Glycine max HOM05D006327 ORTHO05D007952 4.9e-30 136.0 364 38.7
Lalb_Chr11g0071521 Lupinus albus HOM05D006327 ORTHO05D007952 4.9e-30 136.0 357 36.1
COL.COLO4_21256 Corchorus olitorius HOM05D006327 ORTHO05D007952 6.4e-30 135.6 378 38.1
Sed0003639 Sechium edule HOM05D006327 ORTHO05D007952 6.4e-30 135.6 356 39.6
AUR62008321 Chenopodium quinoa HOM05D006327 ORTHO05D007952 5.5e-29 132.5 347 37.2
CsaV3_1G001980 Cucumis sativus L. HOM05D006327 ORTHO05D007952 5.5e-29 132.5 374 33.4
Manes.14G072700 Manihot esculenta HOM05D006327 ORTHO05D007952 9.3e-29 131.7 374 35.6
Hund09383 Selenicereus undatus HOM05D006327 ORTHO05D007952 9.3e-29 131.7 354 35.9
ClCG06G016530 Citrullus lanatus HOM05D006327 ORTHO05D007952 2.7e-28 130.2 375 36.5
Ah.02g112960 Amaranthus hybridus HOM05D006327 ORTHO05D007952 3.5e-28 129.8 357 37.3
Medtr0168s0110 Medicago truncatula HOM05D006327 ORTHO05D007952 6.0e-28 129.0 355 39.2
TWI81G1080 Tripterygium wilfordii HOM05D006327 ORTHO05D007952 6.0e-28 129.0 348 35.6
MD14G1190500 Malus domestica HOM05D006327 ORTHO05D007952 7.9e-28 128.6 383 34.2
FAN18G0307 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.0e-27 128.3 360 33.9
Lj1g0017631 Lotus japonicus HOM05D006327 ORTHO05D007952 3.9e-27 126.3 354 36.2
Nn4g22987 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.9e-27 126.3 413 31.2
Lsat_1_v5_gn_5_17580 Lactuca sativa HOM05D006327 ORTHO05D007952 6.7e-27 125.6 371 34.0
EL10Ac5g10880 Beta vulgaris HOM05D006327 ORTHO05D007952 1.9e-26 124.0 359 35.7
Solyc06g071170.4 Solanum lycopersicum HOM05D006327 ORTHO05D007952 5.6e-26 122.5 348 33.0
HanXRQChr02g0045371 Helianthus annuus HOM05D006327 ORTHO05D007952 7.4e-26 122.1 344 35.5
Sopen06g027480 Solanum pennellii HOM05D006327 ORTHO05D007952 7.4e-26 122.1 348 33.0
PGSC0003DMG400033064 Solanum tuberosum HOM05D006327 ORTHO05D007952 7.4e-26 122.1 348 33.0
Potri.012G072600 Populus trichocarpa HOM05D006327 ORTHO05D007952 1.6e-25 120.9 368 32.6
unitig_61.g26481 Utricularia gibba HOM05D006327 ORTHO05D007952 1.6e-25 120.9 336 36.6
arahy.Tifrunner.gnm1.ann1.RDR8CP Arachis hypogaea HOM05D006327 ORTHO05D007952 4.8e-25 119.4 382 33.5
Eucgr.B00389 Eucalyptus grandis HOM05D006327 ORTHO05D007952 8.1e-25 118.6 370 35.4
arahy.Tifrunner.gnm1.ann1.Y9A7HY Arachis hypogaea HOM05D006327 ORTHO05D007952 5.3e-24 115.9 366 38.0
AUR62021775 Chenopodium quinoa HOM05D006327 ORTHO05D007952 5.3e-24 115.9 358 34.6
THA.LOC104818247 Tarenaya hassleriana HOM05D006327 ORTHO05D007952 5.3e-24 115.9 342 33.0
Carub.0005s1399 Capsella rubella HOM05D006327 ORTHO05D007952 3.8e-22 109.8 356 32.3
AL5G27170 Arabidopsis lyrata HOM05D006327 ORTHO05D007952 1.9e-21 107.5 346 32.7
AT3G47850 Arabidopsis thaliana HOM05D006327 ORTHO05D007952 5.5e-21 105.9 349 33.2
MELO3C017142.2 Cucumis melo HOM05D006327 ORTHO05D007952 5.5e-21 105.9 427 30.4
Cc04_g16010 Coffea canephora HOM05D006327 ORTHO05D007952 1.2e-20 104.8 397 34.0
Rhsim12G0160300 Rhododendron simsii HOM05D006327 ORTHO05D007952 3.5e-20 103.2 299 35.1
SGA_v2.0_scaffold1G00727 Striga asiatica HOM05D006327 ORTHO05D016198 3.5e-20 103.2 103 55.3
BcaC01g01770 Brassica carinata HOM05D006327 ORTHO05D007952 7.9e-20 102.1 355 32.4
BolC3t19506H Brassica oleracea HOM05D006327 ORTHO05D007952 7.9e-20 102.1 355 32.4
SGA_v2.0_scaffold44G16909 Striga asiatica HOM05D003199 ORTHO05D003528 1.0e-19 101.7 99 58.6
C03p72080 Brassica napus HOM05D006327 ORTHO05D007952 3.0e-19 100.1 353 32.0
Sp5g14110 Schrenkiella parvula HOM05D006327 ORTHO05D007952 5.1e-19 99.4 352 31.8
BcaB01g00870 Brassica carinata HOM05D006327 ORTHO05D007952 1.1e-18 98.2 363 31.1
PGR083G2875 Punica granatum HOM05D006327 ORTHO05D007952 3.3e-18 96.7 288 34.7
A06p19780 Brassica napus HOM05D006327 ORTHO05D007952 5.7e-18 95.9 352 32.1
BraA06t25057Z Brassica rapa HOM05D006327 ORTHO05D007952 5.7e-18 95.9 352 32.1
PSO591G0157 Papaver somniferum HOM05D006327 ORTHO05D007952 7.4e-18 95.5 405 29.4
CDE06G0071 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 2.1e-17 94.0 355 30.1
BolC1t03192H Brassica oleracea HOM05D006327 ORTHO05D007952 6.3e-17 92.4 343 30.3
PSO832G2780 Papaver somniferum HOM05D006327 ORTHO05D007952 6.3e-17 92.4 411 28.2
CARHR156550 Cardamine hirsuta HOM05D006327 ORTHO05D007952 4.1e-16 89.7 360 29.4
ECA247G1897 Erigeron canadensis HOM05D006327 ORTHO05D007881 2.0e-15 87.4 319 30.7
CiPaw.12G020800 Carya illinoinensis HOM05D006327 ORTHO05D007952 3.4e-15 86.7 303 32.7
Sabra12G0051800 Salix brachista HOM05D006327 ORTHO05D007952 1.7e-14 84.3 292 30.5
Aqoxy3G03193 Aquilegia oxysepala HOM05D006327 ORTHO05D007952 3.8e-14 83.2 418 30.4
CANSAT80G2449 Cannabis sativa HOM05D006327 ORTHO05D007952 3.8e-14 83.2 455 30.1
Thhalv10010485m.g Eutrema salsugineum HOM05D006327 ORTHO05D007952 1.1e-13 81.6 204 37.3
Hund02693 Selenicereus undatus HOM05D006327 ORTHO05D007952 4.2e-13 79.7 350 30.3
Sed0027580 Sechium edule HOM05D006327 ORTHO05D007952 7.2e-13 79.0 284 30.6
Dinv19897 Davidia involucrata HOM05D006327 ORTHO05D007952 1.2e-12 78.2 300 30.0
Psat5g181760 Pisum sativum HOM05D006327 ORTHO05D007952 1.0e-11 75.1 276 30.1
Zm00001eb053670 Zea mays HOM05D006327 ORTHO05D007952 1.0e-11 75.1 347 29.1
Sc12g0005950 Simmondsia chinensis HOM05D006327 ORTHO05D007952 1.8e-11 74.3 372 27.2
HPP92_015918 Vanilla planifolia HOM05D006327 ORTHO05D007952 1.5e-10 71.2 364 28.3
HPP92_015937 Vanilla planifolia HOM05D006327 ORTHO05D007952 2.5e-10 70.5 372 28.2
BcaB05g23082 Brassica carinata HOM05D006327 ORTHO05D007952 1.6e-09 67.8 310 30.6
Nn5g29700 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.6e-09 67.8 51 60.8
Nn5g29803 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.6e-09 67.8 51 60.8
Nn4g25043 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.2e-09 67.4 51 60.8
Nn1g07420 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.8e-09 67.0 51 58.8
Nn6g34101 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.8e-09 67.0 51 62.7
Nn5g29485 Nelumbo nucifera HOM05D006327 ORTHO05D007952 4.8e-09 66.2 51 58.8
SGA_v2.0_scaffold163G38002 Striga asiatica HOM05D001488 ORTHO05D016198 4.8e-09 66.2 44 75.0
Nn2g11504 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.4e-08 64.7 51 58.8
Nn2g11507 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.4e-08 64.7 51 58.8
Cpa.g.c28309.3 Carica papaya HOM05D006327 ORTHO05D007952 2.4e-08 63.9 49 63.3
Nn1g09464 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.1e-08 63.5 51 58.8
Sc12g0005960 Simmondsia chinensis HOM05D006327 ORTHO05D007952 3.1e-08 63.5 48 62.5
Actinidia19065 Actinidia chinensis HOM05D006327 ORTHO05D007952 5.3e-08 62.8 282 29.8
Cpa.g.sc939.1 Carica papaya HOM05D006327 ORTHO05D007952 1.5e-07 61.2 66 51.5
CDE08G0244 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 5.9e-07 59.3 261 28.7
Oeu035426.1 Olea europaea HOM05D006327 ORTHO05D007952 1.0e-06 58.5 150 34.7
SEGI_36963 Sequoiadendron giganteum HOM05D006327 ORTHO05D007952 1.7e-06 57.8 227 29.1
SGA_v2.0_scaffold157G37391 Striga asiatica HOM05D017365 ORTHO05D016198 3.8e-06 56.6 44 68.2
Os05g0220900 Oryza sativa ssp. japonica HOM05D006327 ORTHO05D007952 6.5e-06 55.8 350 25.4


User provided reference genes

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