Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 0.0e+00 1297.0 688 100.0
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 8.0e-262 907.1 689 72.3
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 1.1e-239 833.6 574 73.9
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 7.8e-233 810.8 674 63.8
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 2.5e-231 805.8 682 63.5
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 1.8e-229 799.7 662 64.0
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 1.8e-229 799.7 670 63.6
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 2.0e-228 796.2 664 63.3
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 3.9e-224 781.9 672 61.6
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 1.9e-223 779.6 665 62.0
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 4.8e-222 775.0 575 68.7
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 4.0e-221 771.9 670 64.3
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 8.4e-219 764.2 671 64.1
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 2.1e-217 759.6 669 62.9
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 2.5e-215 752.7 543 71.3
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 4.3e-215 751.9 544 73.3
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 2.1e-214 749.6 731 56.4
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 2.4e-213 746.1 537 70.4
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 1.2e-212 743.8 695 58.3
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 1.2e-212 743.8 565 66.9
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 4.9e-211 738.4 673 61.2
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 4.6e-209 731.9 677 57.8
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 5.1e-208 728.4 583 63.6
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 1.3e-206 723.8 678 59.9
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 2.2e-206 723.0 574 64.3
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 2.8e-206 722.6 675 60.6
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 1.4e-205 720.3 718 56.1
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 1.4e-205 720.3 581 63.3
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 4.1e-205 718.8 668 59.7
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 4.1e-205 718.8 666 61.1
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 2.0e-204 716.5 665 60.5
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.3e-203 713.8 662 60.9
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 2.9e-203 712.6 667 60.3
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 1.9e-202 709.9 660 58.0
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 3.2e-202 709.1 589 62.5
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 1.2e-201 707.2 661 57.3
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 8.8e-200 701.0 669 56.7
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 8.8e-200 701.0 669 56.7
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 1.1e-199 700.7 693 56.9
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 1.1e-199 700.7 674 59.9
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 1.9e-199 699.9 678 58.7
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 7.4e-199 698.0 676 59.0
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 7.4e-199 698.0 660 56.1
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 9.7e-199 697.6 678 58.7
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 9.7e-199 697.6 678 58.7
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 1.3e-198 697.2 661 56.0
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 1.7e-198 696.8 680 57.1
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 2.2e-198 696.4 673 56.9
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 4.8e-198 695.3 596 61.4
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 2.0e-196 689.9 578 64.2
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 2.9e-195 686.0 669 58.9
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 6.5e-195 684.9 595 62.9
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 8.5e-195 684.5 578 63.3
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 1.4e-194 683.7 668 57.9
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 3.2e-194 682.6 651 57.0
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 1.2e-193 680.6 625 58.1
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 1.6e-193 680.2 663 58.2
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 7.9e-193 677.9 579 63.4
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 1.8e-192 676.8 577 63.6
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 6.7e-192 674.9 677 56.7
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 1.1e-191 674.1 671 56.3
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 1.3e-190 670.6 608 58.9
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 4.1e-189 665.6 648 55.9
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 7.0e-189 664.8 579 63.2
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 2.0e-188 663.3 660 56.5
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 5.9e-188 661.8 596 62.9
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 2.2e-187 659.8 648 55.1
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 2.9e-187 659.4 615 57.7
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.4e-186 657.1 578 61.9
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 2.6e-183 646.4 683 53.3
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 3.3e-183 646.0 685 54.3
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 5.7e-183 645.2 524 63.4
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 2.6e-180 636.3 679 54.6
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 3.5e-180 636.0 660 55.9
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 5.9e-180 635.2 667 52.2
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 3.8e-179 632.5 680 56.5
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 4.7e-177 625.5 677 53.0
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 1.2e-175 620.9 660 55.2
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 7.5e-175 618.2 660 55.0
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 2.2e-174 616.7 665 53.7
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 1.1e-173 614.4 598 58.0
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 2.7e-172 609.8 647 55.6
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 5.9e-172 608.6 659 54.2
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 1.7e-171 607.1 659 54.5
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 1.5e-170 604.0 686 52.2
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 8.8e-168 594.7 656 50.2
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 8.3e-166 588.2 500 63.4
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 5.4e-165 585.5 507 62.1
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 5.4e-165 585.5 648 49.8
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 3.6e-153 546.2 648 49.7
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 2.0e-148 530.4 496 58.1
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 1.2e-145 521.2 415 63.9
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 6.4e-142 508.8 520 59.6
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.6e-140 502.7 558 52.7
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 4.0e-136 489.6 655 43.7
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 2.6e-135 486.9 571 48.9
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 6.6e-131 472.2 660 43.0
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 3.3e-130 469.9 679 43.2
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 1.1e-125 454.9 316 72.5
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 1.9e-122 444.1 653 45.2
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.9e-122 444.1 332 66.9
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.8e-118 429.9 440 56.6
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 3.2e-117 426.8 364 63.2
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 2.1e-116 424.1 365 57.8
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 4.6e-116 422.9 424 56.1
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.2e-85 319.3 557 38.1
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 4.2e-77 293.5 262 61.5
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.3e-75 287.7 200 68.5
VMungo1309G0829 Vigna mungo HOM05D005390 ORTHO05D007086 3.0e-75 287.3 289 58.8
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.1e-68 264.6 200 64.0
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.7e-65 253.8 194 62.4
MBI11_g46351_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 6.5e-62 243.0 225 60.9
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.1e-60 238.0 191 61.8
CDE06G0744 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 1.0e-54 219.2 175 63.4
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 8.5e-54 216.1 349 37.8
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 1.9e-53 214.9 207 59.4
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.7e-49 201.8 169 61.5
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.0e-43 181.0 130 66.2
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 3.4e-42 177.6 160 64.4
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 3.4e-42 177.6 160 64.4
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 1.7e-41 175.3 164 62.8
Hma1.2p1_2683F.1_g326890 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 4.5e-39 167.2 153 60.8
CsaV3_3G015410 Cucumis sativus L. HOM05D005390 ORTHO05D007086 2.1e-36 158.3 174 56.9
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 7.5e-34 149.8 171 55.0
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.3e-29 134.4 92 66.3
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.7e-28 130.6 105 57.1
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 8.0e-28 129.8 97 61.9
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 1.8e-27 128.6 309 34.3
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 9.2e-24 116.3 80 67.5
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 2.1e-23 115.2 71 74.6
CDE06G2390 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 6.0e-23 113.6 109 54.1
CARHR043650 Cardamine hirsuta HOM05D005390 ORTHO05D007086 1.5e-18 99.0 198 39.4
Psat7g117320 Pisum sativum HOM05D005390 ORTHO05D004709 2.0e-18 98.6 81 60.5
Nn1g06248 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.1e-16 90.1 72 62.5
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 1.6e-15 89.0 92 54.3
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 1.6e-15 89.0 58 67.2
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 4.6e-15 87.4 78 52.6
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 8.6e-14 83.2 59 67.8
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 7.3e-13 80.1 46 73.9
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 7.3e-13 80.1 46 73.9
CAN.G254.1 Capsicum annuum HOM05D003813 ORTHO05D004557 9.9e-10 69.7 39 71.8
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 2.9e-09 68.2 47 66.0


User provided reference genes

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