Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 8.3e-109 397.1 211 100.0
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 4.9e-93 344.7 205 88.8
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 6.8e-79 297.7 209 73.2
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 5.6e-73 278.1 208 69.7
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 1.7e-66 256.5 189 69.8
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 3.0e-66 255.8 205 65.4
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 1.5e-65 253.4 205 64.9
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 2.5e-65 252.7 193 69.4
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.3e-65 252.3 195 68.7
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 4.3e-65 251.9 197 68.0
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 5.6e-65 251.5 195 68.7
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 5.6e-65 251.5 201 67.2
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 2.8e-64 249.2 199 66.8
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 2.8e-64 249.2 196 65.8
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 1.4e-63 246.9 194 66.5
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 1.8e-63 246.5 190 66.3
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 4.0e-63 245.4 196 67.3
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 4.0e-63 245.4 193 69.4
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 9.0e-63 244.2 185 68.6
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 1.2e-62 243.8 185 67.6
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 1.5e-62 243.4 198 64.6
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 2.0e-62 243.0 185 67.6
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 2.0e-62 243.0 189 69.3
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 2.0e-62 243.0 197 65.5
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 3.4e-62 242.3 192 67.2
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 3.4e-62 242.3 197 65.5
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 3.4e-62 242.3 189 67.2
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 4.5e-62 241.9 189 66.1
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 5.8e-62 241.5 198 64.6
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 5.8e-62 241.5 191 66.5
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 7.6e-62 241.1 203 64.5
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 7.6e-62 241.1 196 65.8
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 7.6e-62 241.1 193 65.8
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 9.9e-62 240.7 196 65.8
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 9.9e-62 240.7 207 61.8
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 1.7e-61 240.0 196 65.3
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 3.8e-61 238.8 198 64.1
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 3.8e-61 238.8 208 61.5
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 6.4e-61 238.0 187 67.4
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 6.4e-61 238.0 187 67.4
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 1.1e-60 237.3 197 64.5
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 1.4e-60 236.9 184 68.5
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 1.9e-60 236.5 194 63.9
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 2.4e-60 236.1 199 64.3
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 2.4e-60 236.1 188 66.0
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 3.2e-60 235.7 189 67.2
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 4.2e-60 235.3 185 65.9
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 7.1e-60 234.6 191 64.4
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 7.1e-60 234.6 191 69.1
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 9.3e-60 234.2 196 62.8
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 9.3e-60 234.2 192 66.1
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 9.3e-60 234.2 191 66.5
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 9.3e-60 234.2 189 64.6
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 1.2e-59 233.8 186 66.7
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 1.6e-59 233.4 184 64.7
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 2.1e-59 233.0 193 62.7
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 2.1e-59 233.0 189 64.6
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 2.1e-59 233.0 187 65.2
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 2.1e-59 233.0 191 63.9
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 2.1e-59 233.0 194 62.4
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 2.1e-59 233.0 186 66.7
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 2.7e-59 232.6 194 62.9
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 2.7e-59 232.6 191 66.0
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 1.0e-58 230.7 187 67.4
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 1.3e-58 230.3 185 66.5
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 1.3e-58 230.3 185 64.3
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 1.3e-58 230.3 202 62.9
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 1.3e-58 230.3 193 63.2
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 3.9e-58 228.8 178 69.1
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 5.1e-58 228.4 189 65.1
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 6.7e-58 228.0 200 62.5
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 6.7e-58 228.0 191 62.8
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 8.7e-58 227.6 192 63.0
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 8.7e-58 227.6 215 57.2
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 8.7e-58 227.6 185 64.3
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 8.7e-58 227.6 188 67.0
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 8.7e-58 227.6 189 65.1
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 1.5e-57 226.9 193 63.7
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 1.9e-57 226.5 188 66.5
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 2.5e-57 226.1 188 66.5
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 3.3e-57 225.7 188 66.5
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 4.3e-57 225.3 191 62.8
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 4.3e-57 225.3 190 63.7
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 5.6e-57 224.9 191 62.8
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 5.6e-57 224.9 196 60.2
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 5.6e-57 224.9 188 66.0
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 3.7e-56 222.2 192 63.0
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 4.8e-56 221.9 187 65.8
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 6.2e-56 221.5 192 66.1
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 8.1e-56 221.1 195 61.0
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 2.4e-55 219.5 200 60.5
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 2.4e-55 219.5 193 63.7
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 3.1e-55 219.2 191 63.9
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 9.0e-55 217.6 191 60.7
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 1.5e-54 216.9 186 62.4
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 2.6e-54 216.1 200 62.5
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 1.3e-53 213.8 192 62.5
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 2.2e-53 213.0 191 60.7
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 2.9e-53 212.6 194 58.8
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 3.8e-53 212.2 198 58.6
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 4.9e-53 211.8 197 64.5
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 4.9e-53 211.8 188 58.5
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 6.5e-53 211.5 186 61.3
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 6.5e-53 211.5 187 64.7
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.2e-52 209.1 185 61.6
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 4.2e-52 208.8 192 62.0
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.7e-51 206.1 191 60.7
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 3.9e-50 202.2 186 60.2
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 1.1e-49 200.7 194 60.3
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 5.7e-49 198.4 185 58.9
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 7.4e-49 198.0 184 59.2
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 1.3e-48 197.2 144 68.8
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 2.1e-48 196.4 167 64.1
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 2.8e-48 196.1 208 57.7
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 4.8e-48 195.3 116 81.9
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 6.9e-47 191.4 185 56.2
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 1.5e-46 190.3 201 54.7
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 2.6e-46 189.5 202 57.4
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 4.5e-46 188.7 176 58.5
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 9.3e-44 181.0 136 68.4
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 3.5e-43 179.1 197 51.8
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 7.9e-43 177.9 195 51.8
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 2.3e-42 176.4 218 56.0
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 8.7e-42 174.5 116 75.0
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 5.7e-41 171.8 186 55.4
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 7.4e-41 171.4 108 77.8
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 2.2e-40 169.9 134 67.9
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 1.5e-38 163.7 95 84.2
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 2.5e-36 156.4 192 51.0
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 3.6e-35 152.5 100 74.0
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 3.0e-34 149.4 209 46.9
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 1.5e-33 147.1 136 60.3
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 1.5e-33 147.1 209 51.2
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 2.2e-32 143.3 155 55.5
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 9.1e-31 137.9 96 75.0
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 2.9e-29 132.9 205 42.4
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 8.5e-29 131.3 150 49.3
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 1.4e-28 130.6 184 45.1
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 6.1e-27 125.2 127 56.7
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.1e-23 114.4 172 45.3
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 1.8e-23 113.6 101 57.4
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 3.1e-23 112.8 182 42.3
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 1.5e-20 104.0 115 53.9
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 7.2e-20 101.7 134 47.0
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 1.1e-17 94.4 188 36.7
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 1.5e-17 94.0 176 44.9
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 5.7e-17 92.0 92 56.5
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 1.3e-16 90.9 73 67.1
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 2.8e-16 89.7 47 83.0
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 1.2e-11 74.3 99 42.4
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 2.6e-09 66.6 115 36.5
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 2.6e-09 66.6 115 36.5
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 2.6e-09 66.6 115 36.5
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 5.9e-06 55.5 108 42.6


User provided reference genes

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