Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 9.8e-101 370.2 190 100.0
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 6.8e-94 347.4 190 93.2
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 2.9e-84 315.5 188 83.0
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 3.7e-84 315.1 190 82.6
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 8.1e-79 297.4 184 79.9
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 2.9e-76 288.9 186 76.9
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 2.9e-76 288.9 185 75.7
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 4.9e-76 288.1 185 76.2
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 3.2e-75 285.4 185 74.6
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 3.2e-75 285.4 185 74.6
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 3.2e-75 285.4 185 74.6
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 5.4e-75 284.6 185 75.7
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 5.4e-75 284.6 188 74.5
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 9.2e-75 283.9 187 73.8
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 7.8e-74 280.8 200 72.0
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 6.6e-73 277.7 186 73.1
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 1.1e-72 276.9 186 72.6
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 1.1e-72 276.9 186 72.6
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.9e-72 276.2 185 71.9
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.9e-72 276.2 185 71.9
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 4.3e-72 275.0 187 71.7
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 4.3e-72 275.0 187 71.7
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 4.3e-72 275.0 186 73.7
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 5.6e-72 274.6 184 69.6
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 1.2e-71 273.5 190 72.1
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 1.6e-71 273.1 185 73.0
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 2.8e-71 272.3 175 74.9
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 8.1e-71 270.8 185 70.8
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 8.1e-71 270.8 205 66.3
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 2.3e-70 269.2 185 69.7
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 2.3e-70 269.2 186 71.0
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 3.1e-70 268.9 186 71.5
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 3.1e-70 268.9 188 68.6
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 4.0e-70 268.5 183 72.1
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 1.2e-69 266.9 185 71.4
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 1.5e-69 266.5 190 67.4
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 2.6e-69 265.8 185 69.7
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 3.4e-69 265.4 182 71.4
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 3.4e-69 265.4 185 71.4
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 3.4e-69 265.4 185 70.3
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 5.8e-69 264.6 190 68.9
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 9.9e-69 263.8 185 70.3
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 1.7e-68 263.1 184 70.7
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 2.9e-68 262.3 188 66.0
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 2.9e-68 262.3 188 68.1
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 3.7e-68 261.9 186 69.4
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 1.1e-67 260.4 183 68.9
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 1.1e-67 260.4 183 68.9
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 1.9e-67 259.6 185 68.6
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.9e-67 259.6 188 69.7
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 1.9e-67 259.6 188 69.7
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 4.1e-67 258.5 189 67.2
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 9.2e-67 257.3 182 68.1
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 1.2e-66 256.9 185 67.0
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 3.5e-66 255.4 186 68.3
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 3.5e-66 255.4 188 68.6
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 4.6e-66 255.0 188 66.0
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 4.6e-66 255.0 182 67.0
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 4.6e-66 255.0 178 70.8
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 6.0e-66 254.6 185 68.1
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 7.8e-66 254.2 191 68.1
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 1.3e-65 253.4 191 67.5
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 1.3e-65 253.4 185 65.9
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 1.7e-65 253.1 183 68.3
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 8.6e-65 250.8 178 69.7
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 1.1e-64 250.4 204 62.7
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 1.5e-64 250.0 184 66.8
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 1.9e-64 249.6 184 66.3
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 1.9e-64 249.6 185 65.9
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.5e-64 249.2 189 67.2
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 3.3e-64 248.8 174 70.1
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 3.3e-64 248.8 182 66.5
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 5.6e-64 248.1 184 65.8
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 7.3e-64 247.7 189 66.1
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 7.3e-64 247.7 185 64.3
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 1.2e-63 246.9 185 65.4
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 2.1e-63 246.1 178 68.0
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 2.1e-63 246.1 182 67.0
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 2.1e-63 246.1 177 65.5
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 3.6e-63 245.4 177 67.8
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 4.7e-63 245.0 189 66.1
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 1.4e-62 243.4 189 63.5
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 1.8e-62 243.0 188 63.8
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 1.8e-62 243.0 204 60.3
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 4.0e-62 241.9 182 64.8
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 5.2e-62 241.5 187 65.8
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 5.2e-62 241.5 152 75.7
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 6.8e-62 241.1 185 63.2
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 1.2e-61 240.4 177 62.7
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 1.3e-60 236.9 273 49.5
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 6.4e-60 234.6 177 64.4
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 1.4e-59 233.4 184 63.0
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 1.4e-59 233.4 185 64.3
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 2.4e-59 232.6 177 65.5
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 1.6e-58 229.9 157 72.0
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 3.5e-58 228.8 188 60.1
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.3e-55 220.3 178 59.0
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 1.4e-54 216.9 153 70.6
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 3.1e-54 215.7 186 59.1
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 5.8e-53 211.5 161 65.8
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 8.4e-52 207.6 189 54.0
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 4.2e-51 205.3 185 54.1
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 2.1e-50 203.0 189 52.9
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 7.9e-50 201.1 189 52.9
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 1.7e-49 199.9 189 52.9
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 6.6e-49 198.0 189 52.9
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 1.3e-47 193.7 189 51.9
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 3.6e-47 192.2 207 51.2
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 8.1e-47 191.0 189 51.3
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 1.5e-45 186.8 185 55.7
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 7.6e-45 184.5 189 51.3
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 6.4e-44 181.4 189 51.3
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 4.2e-43 178.7 189 50.3
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 9.3e-43 177.6 183 54.6
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 1.2e-42 177.2 189 49.7
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 1.2e-42 177.2 189 49.7
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 1.2e-42 177.2 189 49.7
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 3.9e-41 172.2 189 48.7
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 5.6e-40 168.3 189 47.6
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 5.6e-40 168.3 189 47.6
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 2.0e-37 159.8 148 54.7
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 2.0e-37 159.8 106 75.5
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.6e-34 150.2 155 55.5
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 3.5e-34 149.1 189 45.5
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 1.4e-27 127.1 78 75.6
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 1.6e-26 123.6 109 58.7
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 7.4e-24 114.8 86 68.6
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 4.5e-21 105.5 155 38.7
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 1.3e-20 104.0 167 33.5
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 1.3e-20 104.0 82 67.1
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 1.3e-20 104.0 85 64.7
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 5.0e-20 102.1 151 39.7
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 5.0e-20 102.1 73 63.0
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.9e-19 100.1 87 54.0
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.5e-16 90.5 76 53.9
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 2.0e-16 90.1 73 60.3
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.0e-16 90.1 81 53.1
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.0e-16 90.1 76 53.9
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 2.5e-16 89.7 119 36.1
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 2.4e-14 83.2 83 56.6
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 6.5e-12 75.1 66 62.1
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 3.2e-11 72.8 91 49.5
Zm00001eb076020 Zea mays HOM05D005262 ORTHO05D444176 1.4e-06 57.4 45 60.0


User provided reference genes

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