Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G10745 Striga asiatica HOM05D007893 ORTHO05D010042 2.5e-158 563.5 780 100.0
MSTRG.23210 Avicennia marina HOM05D007893 ORTHO05D010042 2.1e-85 321.2 258 62.8
Migut.O00264 Erythranthe guttata HOM05D007893 ORTHO05D010042 6.0e-80 303.1 256 59.4
Oeu023344.1 Olea europaea HOM05D007893 ORTHO05D010042 8.2e-61 239.6 221 53.4
Oeu023345.1 Olea europaea HOM05D007893 ORTHO05D010042 8.2e-61 239.6 221 53.4
Gorai.004G065800 Gossypium raimondii HOM05D007893 ORTHO05D010042 4.5e-59 233.8 214 54.7
Glyma.01G016100 Glycine max HOM05D007893 ORTHO05D010042 1.0e-55 222.6 214 52.8
Cfa012483 Carpinus fangiana HOM05D007893 ORTHO05D010042 2.3e-55 221.5 215 53.5
TAR374G1349 Trochodendron aralioides HOM05D007893 ORTHO05D010042 3.9e-55 220.7 259 45.9
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.1e-54 219.2 222 53.2
Thecc.03G306900 Theobroma cacao HOM05D007893 ORTHO05D010042 4.3e-54 217.2 258 45.7
VMungo1215G2510 Vigna mungo HOM05D007893 ORTHO05D010042 1.7e-53 215.3 212 51.9
Lalb_Chr08g0231971 Lupinus albus HOM05D007893 ORTHO05D010042 2.2e-53 214.9 215 49.3
COL.COLO4_16973 Corchorus olitorius HOM05D000070 ORTHO05D007358 2.8e-53 214.5 258 45.3
Nitab4.5_0000256g0090 Nicotiana tabacum HOM05D007893 ORTHO05D010042 2.8e-53 214.5 260 45.4
TWI60G0064 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 4.8e-53 213.8 262 45.8
arahy.Tifrunner.gnm1.ann1.AUE0A3 Arachis hypogaea HOM05D007893 ORTHO05D010042 1.4e-52 212.2 217 50.7
Phvul.002G138600 Phaseolus vulgaris HOM05D007893 ORTHO05D010042 1.4e-52 212.2 214 50.0
arahy.Tifrunner.gnm1.ann1.7C2XF6 Arachis hypogaea HOM05D007893 ORTHO05D010042 1.8e-52 211.8 217 50.7
Nitab4.5_0002310g0060 Nicotiana tabacum HOM05D007893 ORTHO05D010042 1.8e-52 211.8 259 45.9
SalBow6G7259 Salvia bowleyana HOM05D007893 ORTHO05D010042 6.9e-52 209.9 166 62.0
Sc22g0001680 Simmondsia chinensis HOM05D007893 ORTHO05D010042 1.2e-51 209.1 259 43.2
arahy.Tifrunner.gnm1.ann1.40GBPJ Arachis hypogaea HOM05D007893 ORTHO05D010042 1.5e-51 208.8 217 49.8
MD14G1081200 Malus domestica HOM05D007893 ORTHO05D010042 2.6e-51 208.0 215 50.2
Psat2g137760 Pisum sativum HOM05D007893 ORTHO05D010042 3.8e-50 204.1 209 49.8
Lj7A473T51 Lonicera japonica HOM05D007893 ORTHO05D010042 5.0e-50 203.8 215 50.7
GSVIVG01013113001 Vitis vinifera HOM05D007893 ORTHO05D010042 8.5e-50 203.0 185 56.2
Ca_08153_v3 Cicer arietinum L. HOM05D007893 ORTHO05D010042 2.5e-49 201.4 213 47.9
Haze_08182 Corylus avellana HOM05D007893 ORTHO05D010042 2.5e-49 201.4 215 50.2
Nn7g37761 Nelumbo nucifera HOM05D007893 ORTHO05D010042 4.2e-49 200.7 234 44.4
CiPaw.12G066600 Carya illinoinensis HOM05D007893 ORTHO05D010042 1.2e-48 199.1 215 47.0
TPR.G8086 Trifolium pratense HOM05D007893 ORTHO05D010042 3.6e-48 197.6 214 46.7
RcHm_v2.0_Chr3g0484571 Rosa chinensis HOM05D007893 ORTHO05D010042 4.7e-48 197.2 214 48.1
Eucgr.E00255 Eucalyptus grandis HOM05D007893 ORTHO05D010042 7.9e-48 196.4 221 46.6
Sed0014013 Sechium edule HOM05D007893 ORTHO05D010042 1.4e-47 195.7 213 46.9
ClCG10G008950 Citrullus lanatus HOM05D007893 ORTHO05D010042 1.1e-46 192.6 189 50.8
Cpa.g.sc159.24 Carica papaya HOM05D007893 ORTHO05D010042 4.4e-46 190.7 215 45.6
QL05p025350 Quercus lobata HOM05D007893 ORTHO05D010042 7.4e-46 189.9 254 44.5
TPR.G6545 Trifolium pratense HOM05D007893 ORTHO05D010042 1.3e-45 189.1 209 46.9
Cc08_g03180 Coffea canephora HOM05D007893 ORTHO05D010042 1.1e-44 186.0 258 39.9
PGSC0003DMG400002555 Solanum tuberosum HOM05D007893 ORTHO05D010042 3.1e-44 184.5 219 40.2
Potri.001G139300 Populus trichocarpa HOM05D007893 ORTHO05D010042 1.7e-42 178.7 258 41.1
DCAR_012172 Daucus carota HOM05D007893 ORTHO05D010042 2.9e-42 177.9 216 42.6
Medtr5g029690 Medicago truncatula HOM05D007893 ORTHO05D010042 3.2e-41 174.5 209 45.0
Sabra01G0108300 Salix brachista HOM05D007893 ORTHO05D010042 2.1e-40 171.8 257 40.1
Lj3g0001800 Lotus japonicus HOM05D007893 ORTHO05D010042 1.4e-39 169.1 214 45.8
Lj3g0011187 Lotus japonicus HOM05D007893 ORTHO05D010042 1.4e-39 169.1 214 45.8
Nitab4.5_0009549g0020 Nicotiana tabacum HOM05D007893 ORTHO05D010042 1.8e-39 168.7 259 40.5
Atru.chr2.2027 Acer truncatum HOM05D007893 ORTHO05D010042 4.4e-38 164.1 262 38.2
Atru.chr2.2039 Acer truncatum HOM05D007893 ORTHO05D010042 4.4e-38 164.1 262 38.2
PGR042G3148 Punica granatum HOM05D007893 ORTHO05D010042 1.7e-37 162.2 260 40.0
Duzib068G1049 Durio zibethinus HOM05D007893 ORTHO05D010042 5.3e-36 157.1 165 49.7
Manes.04G148100 Manihot esculenta HOM05D007893 ORTHO05D010042 5.3e-36 157.1 256 38.3
TWI75G0531 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 7.0e-36 156.8 182 46.7
TWI75G0860 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 7.0e-36 156.8 182 46.7
TWI75G1402 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 7.0e-36 156.8 182 46.7
Gohir.D08G063700 Gossypium hirsutum HOM05D007893 ORTHO05D010042 9.1e-36 156.4 166 50.6
MBI18_g42841_MAGBIO Magnolia biondii HOM05D007893 ORTHO05D010042 2.6e-35 154.8 189 43.4
TWI75G0965 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.5e-35 154.5 182 46.2
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.5e-35 154.5 182 46.2
Nn6g33361 Nelumbo nucifera HOM05D007893 ORTHO05D010042 2.1e-32 145.2 216 37.0
vmacro00309 Vaccinium macrocarpon HOM05D007893 ORTHO05D010042 2.1e-32 145.2 216 38.0
Peaxi162Scf00265g00033 Petunia axillaris HOM05D007893 ORTHO05D010042 2.7e-32 144.8 164 48.2
Aqoxy4G00051 Aquilegia oxysepala HOM05D007893 ORTHO05D010042 6.1e-32 143.7 166 44.6
Nitab4.5_0005203g0030 Nicotiana tabacum HOM05D007893 ORTHO05D010042 2.4e-28 131.7 168 42.9
Hma1.2p1_2831F.1_g329220 Hydrangea macrophylla HOM05D007893 ORTHO05D010042 5.4e-28 130.6 138 50.7
Zm00001eb109140 Zea mays HOM05D007893 ORTHO05D010042 1.2e-27 129.4 232 31.9
SGA_v2.0_scaffold141G35594 Striga asiatica HOM05D017480 ORTHO05D026194 1.9e-25 122.1 63 95.2
Sopen00g012250 Solanum pennellii HOM05D007893 ORTHO05D010042 1.2e-24 119.4 155 39.4
HPP92_022591 Vanilla planifolia HOM05D007893 ORTHO05D010042 1.2e-24 119.4 210 33.8
SGA_v2.0_scaffold484G52360 Striga asiatica HOM05D017480 ORTHO05D026194 2.7e-24 118.2 63 93.7
Dinv25240 Davidia involucrata HOM05D007893 ORTHO05D010042 4.4e-22 110.9 169 40.8
SalBow6G6080 Salvia bowleyana HOM05D007893 ORTHO05D010042 1.1e-20 106.3 169 42.6
ATR0680G090 Amborella trichopoda HOM05D007893 ORTHO05D010042 7.7e-19 100.1 144 34.7
Solyc03g120460.4 Solanum lycopersicum HOM05D000001 ORTHO05D009971 2.3e-18 98.6 99 47.5
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 3.3e-17 94.7 209 33.5
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 1.1e-12 79.7 234 24.4
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 1.4e-12 79.3 202 25.2
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 5.4e-12 77.4 195 28.7
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 1.6e-11 75.9 119 32.8
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 1.6e-11 75.9 123 30.9
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 2.3e-10 72.0 122 33.6
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 2.9e-10 71.6 259 24.3
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 2.9e-10 71.6 259 24.3
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 3.9e-10 71.2 259 23.9
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 5.0e-10 70.9 123 30.1
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 6.6e-10 70.5 212 24.1
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 8.6e-10 70.1 119 31.9
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 8.6e-10 70.1 119 31.9
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 8.6e-10 70.1 232 24.1
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 2.5e-09 68.6 121 32.2
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 7.3e-09 67.0 135 25.2
CDE02G0175 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 2.1e-08 65.5 96 36.5
Gohir.A08G054000 Gossypium hirsutum HOM05D007893 ORTHO05D010042 2.8e-08 65.1 68 47.1
HPP92_026390 Vanilla planifolia HOM05D004824 ORTHO05D003903 2.8e-08 65.1 139 24.5
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 4.7e-08 64.3 242 24.0
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 6.2e-08 63.9 209 23.4
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 8.0e-08 63.5 131 28.2
COL.COLO4_22110 Corchorus olitorius HOM05D000891 ORTHO05D000761 8.0e-08 63.5 123 31.7
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 8.0e-08 63.5 198 24.2
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 8.0e-08 63.5 171 25.7
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 8.0e-08 63.5 192 24.0
Gohir.D11G205366 Gossypium hirsutum HOM05D007545 ORTHO05D009579 1.0e-07 63.2 130 27.7
SHI18058 Sapria himalayana HOM05D006888 ORTHO05D008371 1.4e-07 62.8 137 25.5
SGA_v2.0_scaffold24G10272 Striga asiatica HOM05D007639 ORTHO05D009509 1.4e-07 62.8 174 22.4
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 1.8e-07 62.4 105 31.4
FAN25G3383 Fragaria x ananassa HOM05D007956 ORTHO05D010152 1.8e-07 62.4 156 22.4
Os05g0275100 Oryza sativa ssp. japonica HOM05D007639 ORTHO05D009509 1.8e-07 62.4 110 29.1
Prupe.5G142900 Prunus persica HOM05D005764 ORTHO05D006600 1.8e-07 62.4 103 33.0
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 1.8e-07 62.4 195 26.2
GSVIVG01036273001 Vitis vinifera HOM05D000162 ORTHO05D000090 1.8e-07 62.4 138 31.2
C03p81990 Brassica napus HOM05D007551 ORTHO05D009424 3.1e-07 61.6 105 33.3
BolC3t20473H Brassica oleracea HOM05D007551 ORTHO05D009424 3.1e-07 61.6 105 33.3
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 5.2e-07 60.8 183 26.2
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 5.2e-07 60.8 220 23.6
Haze_15114 Corylus avellana HOM05D000891 ORTHO05D000761 6.8e-07 60.5 122 30.3
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 6.8e-07 60.5 208 24.0
TAR629G0629 Trochodendron aralioides HOM05D007956 ORTHO05D010152 6.8e-07 60.5 160 21.2
GSVIVG01030107001 Vitis vinifera HOM05D005764 ORTHO05D006600 6.8e-07 60.5 134 26.9
MD07G1081300 Malus domestica HOM05D002986 ORTHO05D018174 8.9e-07 60.1 100 28.0
Sp2g13565 Schrenkiella parvula HOM05D007496 ORTHO05D009479 8.9e-07 60.1 148 30.4
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 8.9e-07 60.1 207 22.7
AT2G02150 Arabidopsis thaliana HOM05D007496 ORTHO05D009479 1.2e-06 59.7 147 27.9
CsaV3_5G006140 Cucumis sativus L. HOM05D005764 ORTHO05D006600 1.2e-06 59.7 123 31.7
FAN21G4014 Fragaria x ananassa HOM05D007956 ORTHO05D010152 1.2e-06 59.7 156 21.2
Ciclev10018367m.g Citrus clementina HOM05D007956 ORTHO05D010152 1.5e-06 59.3 139 25.2
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 1.5e-06 59.3 176 25.0
AL5G11430 Arabidopsis lyrata HOM05D007496 ORTHO05D009479 2.0e-06 58.9 147 27.2
Lalb_Chr09g0334421 Lupinus albus HOM05D007551 ORTHO05D009424 2.0e-06 58.9 106 33.0
Nitab4.5_0000628g0030 Nicotiana tabacum HOM05D000891 ORTHO05D000761 2.0e-06 58.9 122 28.7
SGA_v2.0_scaffold114G32030 Striga asiatica HOM05D007956 ORTHO05D010152 2.0e-06 58.9 156 25.6
BolC8t49189H Brassica oleracea HOM05D000032 ORTHO05D007907 2.6e-06 58.5 123 31.7
FAN04G0939 Fragaria x ananassa HOM05D007551 ORTHO05D009424 2.6e-06 58.5 110 31.8
Solyc05g013400.4 Solanum lycopersicum HOM05D006842 ORTHO05D008908 2.6e-06 58.5 145 31.0
Peaxi162Scf00008g03911 Petunia axillaris HOM05D000891 ORTHO05D000761 3.4e-06 58.2 122 29.5
GSVIVG01003980001 Vitis vinifera HOM05D006844 ORTHO05D008504 3.4e-06 58.2 181 30.4
Carub.0005s0122 Capsella rubella HOM05D007496 ORTHO05D009479 4.4e-06 57.8 148 27.7
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 4.4e-06 57.8 231 24.2
Lj2P449T26 Lonicera japonica HOM05D000891 ORTHO05D000761 4.4e-06 57.8 123 30.1
Prupe.3G018200 Prunus persica HOM05D007551 ORTHO05D009424 4.4e-06 57.8 110 31.8
SEGI_16355 Sequoiadendron giganteum HOM05D004271 ORTHO05D006011 4.4e-06 57.8 160 25.6
SEGI_21536 Sequoiadendron giganteum HOM05D007639 ORTHO05D009509 4.4e-06 57.8 152 31.6
MELO3C016242.2 Cucumis melo HOM05D007551 ORTHO05D009424 5.8e-06 57.4 109 33.0
MBI02_g38361_MAGBIO Magnolia biondii HOM05D007426 ORTHO05D009167 5.8e-06 57.4 214 21.0
Sabra05G0054900 Salix brachista HOM05D000104 ORTHO05D006071 5.8e-06 57.4 119 32.8
Sed0024715 Sechium edule HOM05D007390 ORTHO05D009114 5.8e-06 57.4 103 28.2
C08p15620 Brassica napus HOM05D000032 ORTHO05D007907 7.5e-06 57.0 123 30.9
CAN.G1503.13 Capsicum annuum HOM05D006174 ORTHO05D007987 7.5e-06 57.0 116 27.6
Cpa.g.sc3.432 Carica papaya HOM05D007551 ORTHO05D009424 7.5e-06 57.0 103 35.0
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 7.5e-06 57.0 118 27.1
FvH4_5g24430 Fragaria vesca HOM05D007551 ORTHO05D009424 7.5e-06 57.0 184 26.1
MD15G1265700 Malus domestica HOM05D000891 ORTHO05D000761 7.5e-06 57.0 122 29.5
RcHm_v2.0_Chr5g0003911 Rosa chinensis HOM05D007956 ORTHO05D010152 7.5e-06 57.0 155 20.6
Aqoxy7G03766 Aquilegia oxysepala HOM05D007439 ORTHO05D009294 9.8e-06 56.6 122 26.2
CsaV3_4G007030 Cucumis sativus L. HOM05D007551 ORTHO05D009424 9.8e-06 56.6 110 32.7
DCAR_025928 Daucus carota HOM05D000891 ORTHO05D000761 9.8e-06 56.6 122 28.7
FAN13G0867 Fragaria x ananassa HOM05D007551 ORTHO05D009424 9.8e-06 56.6 184 25.5
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 9.8e-06 56.6 162 24.1
Solyc02g062910.3 Solanum lycopersicum HOM05D000891 ORTHO05D000761 9.8e-06 56.6 122 28.7
Sopen02g013930 Solanum pennellii HOM05D000891 ORTHO05D000761 9.8e-06 56.6 122 28.7


User provided reference genes

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