Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G10718 Striga asiatica HOM05D005752 ORTHO05D006959 5.8e-54 214.2 124 100.0
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 2.7e-19 99.0 110 52.7
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 1.2e-17 93.6 110 54.5
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 1.4e-15 86.7 119 42.9
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 1.8e-15 86.3 119 47.1
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 5.9e-14 81.3 90 57.8
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 5.9e-14 81.3 111 45.0
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 7.7e-14 80.9 105 47.6
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 1.3e-13 80.1 119 41.2
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 3.8e-13 78.6 111 40.5
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 6.5e-13 77.8 121 51.2
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 6.5e-13 77.8 111 46.8
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 1.1e-12 77.0 128 44.5
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 1.9e-12 76.3 121 50.4
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 1.9e-12 76.3 131 42.7
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 1.9e-12 76.3 123 41.5
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 2.5e-12 75.9 83 53.0
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 9.4e-12 73.9 123 43.9
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 2.7e-11 72.4 129 38.8
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 2.7e-11 72.4 120 43.3
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 6.1e-11 71.2 118 38.1
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 8.0e-11 70.9 120 41.7
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 1.4e-10 70.1 122 39.3
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 1.8e-10 69.7 120 38.3
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 1.8e-10 69.7 118 38.1
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 3.0e-10 68.9 112 43.8
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 4.0e-10 68.6 112 43.8
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 5.2e-10 68.2 125 42.4
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 2.6e-09 65.9 118 39.8
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 4.4e-09 65.1 129 36.4
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 5.7e-09 64.7 124 40.3
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 7.5e-09 64.3 119 41.2
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 9.8e-09 63.9 123 37.4
Cc00_g01560 Coffea canephora HOM05D005752 ORTHO05D006959 2.8e-08 62.4 85 47.1
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 3.7e-08 62.0 112 41.1
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 3.7e-08 62.0 89 46.1
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 4.9e-08 61.6 91 47.3
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 4.9e-08 61.6 109 37.6
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 4.9e-08 61.6 86 41.9
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 4.9e-08 61.6 125 39.2
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 6.3e-08 61.2 124 38.7
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 6.3e-08 61.2 144 35.4
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 8.3e-08 60.8 108 38.0
FAN13G1309 Fragaria x ananassa HOM05D005752 ORTHO05D006959 8.3e-08 60.8 120 38.3
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 1.1e-07 60.5 119 37.8
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 1.8e-07 59.7 118 34.7
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 1.8e-07 59.7 120 35.8
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 1.8e-07 59.7 115 38.3
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 2.4e-07 59.3 126 34.9
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 2.4e-07 59.3 86 44.2
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 3.1e-07 58.9 109 39.4
QL10p031508 Quercus lobata HOM05D005752 ORTHO05D006959 4.1e-07 58.5 95 42.1
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 1.2e-06 57.0 124 33.9
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 1.2e-06 57.0 92 46.7
BcaC08g45649 Brassica carinata HOM05D005752 ORTHO05D006959 1.6e-06 56.6 121 35.5
Cpa.g.sc628.6 Carica papaya HOM05D005752 ORTHO05D006959 1.6e-06 56.6 115 37.4
CsaV3_1G005260 Cucumis sativus L. HOM05D005752 ORTHO05D006959 1.6e-06 56.6 87 48.3
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 2.0e-06 56.2 110 39.1
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 2.0e-06 56.2 118 33.1
vmacro17760 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 2.0e-06 56.2 89 40.4
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 2.7e-06 55.8 119 34.5
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 2.7e-06 55.8 109 38.5
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 3.5e-06 55.5 122 36.1
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 5.9e-06 54.7 128 34.4
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 5.9e-06 54.7 120 35.0
Solyc06g150131.1 Solanum lycopersicum HOM05D005752 ORTHO05D006959 5.9e-06 54.7 111 37.8


User provided reference genes

Program Settings