Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold258G45786 Striga asiatica HOM05D001361 ORTHO05D005105 1.7e-49 199.1 107 100.0
SGA_v2.0_scaffold114G31917 Striga asiatica HOM05D001361 ORTHO05D005105 4.8e-28 127.9 97 76.3
SGA_v2.0_scaffold7G04048 Striga asiatica HOM05D001361 ORTHO05D005105 4.5e-26 121.3 97 72.2
MSTRG.8019 Avicennia marina HOM05D001361 ORTHO05D005105 4.9e-25 117.9 97 68.0
SalBow1G2500 Salvia bowleyana HOM05D001361 ORTHO05D005105 7.9e-23 110.5 99 64.6
MSTRG.486 Avicennia marina HOM05D001361 ORTHO05D005105 2.5e-21 105.5 97 61.9
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 3.3e-21 105.1 103 59.2
Dinv17585 Davidia involucrata HOM05D001361 ORTHO05D005105 2.8e-20 102.1 103 57.3
TAR371G0443 Trochodendron aralioides HOM05D001361 ORTHO05D005105 4.8e-20 101.3 98 57.1
CSS0035859 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D005105 8.1e-20 100.5 103 55.3
Nn3g16410 Nelumbo nucifera HOM05D001361 ORTHO05D005105 8.1e-20 100.5 76 68.4
GSVIVG01010524001 Vitis vinifera HOM05D001361 ORTHO05D005105 1.4e-19 99.8 79 64.6
Cc11_g17160 Coffea canephora HOM05D001361 ORTHO05D005105 2.4e-19 99.0 80 66.2
Migut.K00986 Erythranthe guttata HOM05D001361 ORTHO05D005105 4.0e-19 98.2 99 60.6
TAR629G2391 Trochodendron aralioides HOM05D001361 ORTHO05D005105 4.0e-19 98.2 98 56.1
Solyc05g015820.4 Solanum lycopersicum HOM05D001361 ORTHO05D005105 6.9e-19 97.4 103 55.3
Sopen05g011440 Solanum pennellii HOM05D001361 ORTHO05D005105 6.9e-19 97.4 103 55.3
Nitab4.5_0008235g0020 Nicotiana tabacum HOM05D001361 ORTHO05D005105 9.0e-19 97.1 103 55.3
Atru.chr11.2355 Acer truncatum HOM05D001361 ORTHO05D005105 2.0e-18 95.9 104 55.8
CDE02G3199 Ceratophyllum demersum HOM05D001361 ORTHO05D005105 2.0e-18 95.9 118 50.0
CDE05G0317 Ceratophyllum demersum HOM05D001361 ORTHO05D005105 2.0e-18 95.9 99 52.5
Duzib268G1250 Durio zibethinus HOM05D001361 ORTHO05D005105 2.0e-18 95.9 72 66.7
CiPaw.05G107400 Carya illinoinensis HOM05D001361 ORTHO05D005105 2.6e-18 95.5 103 53.4
Gohir.D04G187700 Gossypium hirsutum HOM05D001361 ORTHO05D005105 2.6e-18 95.5 72 70.8
Gorai.012G180700 Gossypium raimondii HOM05D001361 ORTHO05D005105 2.6e-18 95.5 72 70.8
Nitab4.5_0010664g0010 Nicotiana tabacum HOM05D001361 ORTHO05D005105 2.6e-18 95.5 103 55.3
Nn4g22268 Nelumbo nucifera HOM05D001361 ORTHO05D005105 3.4e-18 95.1 101 57.4
Rhsim12G0024000 Rhododendron simsii HOM05D001361 ORTHO05D005105 3.4e-18 95.1 109 54.1
Hma1.2p1_0065F.1_g035150 Hydrangea macrophylla HOM05D001361 ORTHO05D005105 5.8e-18 94.4 106 54.7
Duzib251G0004 Durio zibethinus HOM05D001361 ORTHO05D005105 7.6e-18 94.0 103 51.5
Peaxi162Scf00128g01540 Petunia axillaris HOM05D001361 ORTHO05D005105 7.6e-18 94.0 103 53.4
Thecc.02G202500 Theobroma cacao HOM05D001361 ORTHO05D005105 7.6e-18 94.0 103 50.5
Gohir.A04G141200 Gossypium hirsutum HOM05D001361 ORTHO05D005105 9.9e-18 93.6 72 69.4
Manes.12G008800 Manihot esculenta HOM05D001361 ORTHO05D005105 9.9e-18 93.6 103 51.5
Peaxi162Scf00023g02226 Petunia axillaris HOM05D001361 ORTHO05D005105 9.9e-18 93.6 76 69.7
EL10Ac6g13534 Beta vulgaris HOM05D001361 ORTHO05D005105 1.3e-17 93.2 76 61.8
EL10Ac6g15295 Beta vulgaris HOM05D001361 ORTHO05D005105 1.7e-17 92.8 76 60.5
Cfa009384 Carpinus fangiana HOM05D001361 ORTHO05D005105 1.7e-17 92.8 103 52.4
CDE05G1789 Ceratophyllum demersum HOM05D001361 ORTHO05D005105 2.9e-17 92.0 103 49.5
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 2.9e-17 92.0 106 52.8
Potri.003G169200 Populus trichocarpa HOM05D001361 ORTHO05D005105 4.9e-17 91.3 106 52.8
vmacro01051 Vaccinium macrocarpon HOM05D001361 ORTHO05D005105 4.9e-17 91.3 83 66.3
Actinidia08055 Actinidia chinensis HOM05D001361 ORTHO05D005105 6.4e-17 90.9 103 49.5
Duzib248G0082 Durio zibethinus HOM05D001361 ORTHO05D005105 8.4e-17 90.5 103 50.5
Hund25479 Selenicereus undatus HOM05D001361 ORTHO05D005105 8.4e-17 90.5 103 53.4
AL1G40660 Arabidopsis lyrata HOM05D001361 ORTHO05D005105 1.4e-16 89.7 86 58.1
AT1G24267 Arabidopsis thaliana HOM05D001361 ORTHO05D005105 1.4e-16 89.7 86 59.3
Gohir.A03G124400 Gossypium hirsutum HOM05D001361 ORTHO05D005105 1.4e-16 89.7 75 61.3
Gohir.D02G146800 Gossypium hirsutum HOM05D001361 ORTHO05D005105 1.9e-16 89.4 75 61.3
BcaC01g01627 Brassica carinata HOM05D001361 ORTHO05D005105 2.4e-16 89.0 103 54.4
A08p26450 Brassica napus HOM05D001361 ORTHO05D005105 2.4e-16 89.0 103 54.4
BolC3t19653H Brassica oleracea HOM05D001361 ORTHO05D005105 2.4e-16 89.0 103 54.4
BraA08t34597Z Brassica rapa HOM05D001361 ORTHO05D005105 2.4e-16 89.0 103 54.4
CANSAT01G0548 Cannabis sativa HOM05D001361 ORTHO05D005105 2.4e-16 89.0 76 63.2
Actinidia30631 Actinidia chinensis HOM05D001361 ORTHO05D005105 3.2e-16 88.6 103 48.5
Oeu006513.1 Olea europaea HOM05D001361 ORTHO05D005105 3.2e-16 88.6 97 54.6
Carub.0001s2579 Capsella rubella HOM05D001361 ORTHO05D005105 4.2e-16 88.2 103 52.4
DCAR_024667 Daucus carota HOM05D001361 ORTHO05D005105 4.2e-16 88.2 102 53.9
Gorai.005G164400 Gossypium raimondii HOM05D001361 ORTHO05D005105 5.5e-16 87.8 75 61.3
Actinidia39801 Actinidia chinensis HOM05D001361 ORTHO05D005105 7.1e-16 87.4 71 63.4
C03p73600 Brassica napus HOM05D001361 ORTHO05D005105 7.1e-16 87.4 103 53.4
CAN.G1358.16 Capsicum annuum HOM05D001361 ORTHO05D005105 9.3e-16 87.0 103 50.5
Sp1g23500 Schrenkiella parvula HOM05D001361 ORTHO05D005105 1.2e-15 86.7 103 51.5
THA.LOC104807139 Tarenaya hassleriana HOM05D001361 ORTHO05D005105 1.2e-15 86.7 97 54.6
BcaB03g12068 Brassica carinata HOM05D001361 ORTHO05D005105 1.6e-15 86.3 103 52.4
ClCG06G002090 Citrullus lanatus HOM05D001361 ORTHO05D005105 1.6e-15 86.3 103 48.5
Thhalv10008045m.g Eutrema salsugineum HOM05D001361 ORTHO05D005105 1.6e-15 86.3 76 60.5
TWI75G0976 Tripterygium wilfordii HOM05D001361 ORTHO05D005105 2.7e-15 85.5 105 46.7
CARHR026830 Cardamine hirsuta HOM05D001361 ORTHO05D005105 4.6e-15 84.7 88 53.4
PGR102G1867 Punica granatum HOM05D001361 ORTHO05D005105 4.6e-15 84.7 71 62.0
HanXRQChr12g0361331 Helianthus annuus HOM05D001361 ORTHO05D005105 6.0e-15 84.3 103 53.4
HPP92_008062 Vanilla planifolia HOM05D001361 ORTHO05D005105 7.9e-15 84.0 77 55.8
THA.LOC104825490 Tarenaya hassleriana HOM05D001361 ORTHO05D005105 1.3e-14 83.2 103 50.5
A09p38680 Brassica napus HOM05D001361 ORTHO05D005105 2.3e-14 82.4 97 49.5
BraA09t39376Z Brassica rapa HOM05D001361 ORTHO05D005105 2.3e-14 82.4 97 49.5
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 2.3e-14 82.4 103 51.5
Potri.001G058700 Populus trichocarpa HOM05D001361 ORTHO05D005105 3.0e-14 82.0 106 49.1
BcaC05g26733 Brassica carinata HOM05D001361 ORTHO05D005105 3.9e-14 81.6 97 50.5
Eucgr.B03519 Eucalyptus grandis HOM05D001361 ORTHO05D005105 3.9e-14 81.6 103 48.5
C05p25950 Brassica napus HOM05D001361 ORTHO05D005105 8.7e-14 80.5 97 48.5
AUR62028903 Chenopodium quinoa HOM05D001361 ORTHO05D005105 1.1e-13 80.1 77 53.2
unitig_747.g21121 Utricularia gibba HOM05D001361 ORTHO05D005105 1.1e-13 80.1 103 47.6
Carub.0001s2580 Capsella rubella HOM05D001361 ORTHO05D005105 1.5e-13 79.7 103 47.6
Cpa.g.sc200.23 Carica papaya HOM05D001361 ORTHO05D005105 1.5e-13 79.7 104 50.0
Sabra01G0042200 Salix brachista HOM05D001361 ORTHO05D005105 1.5e-13 79.7 79 58.2
HanXRQChr05g0128771 Helianthus annuus HOM05D001361 ORTHO05D005105 1.9e-13 79.3 104 52.9
Ah.02g130800 Amaranthus hybridus HOM05D001361 ORTHO05D005105 2.5e-13 79.0 76 53.9
Sc04g0010260 Simmondsia chinensis HOM05D001361 ORTHO05D005105 2.5e-13 79.0 103 44.7
AT1G24265 Arabidopsis thaliana HOM05D001361 ORTHO05D005105 3.3e-13 78.6 103 44.7
BcaC05g26540 Brassica carinata HOM05D001361 ORTHO05D005105 4.3e-13 78.2 104 51.9
TWI36G1404 Tripterygium wilfordii HOM05D001361 ORTHO05D005105 4.3e-13 78.2 102 48.0
Aa31LG7G9940 Aethionema arabicum HOM05D001361 ORTHO05D005105 5.6e-13 77.8 103 45.6
BcaC05g26539 Brassica carinata HOM05D001361 ORTHO05D005105 5.6e-13 77.8 97 46.4
BolC5t31314H Brassica oleracea HOM05D001361 ORTHO05D005105 5.6e-13 77.8 97 46.4
CARHR026840 Cardamine hirsuta HOM05D001361 ORTHO05D005105 5.6e-13 77.8 76 56.6
Thhalv10008078m.g Eutrema salsugineum HOM05D001361 ORTHO05D005105 5.6e-13 77.8 103 46.6
BraA09t39375Z Brassica rapa HOM05D001361 ORTHO05D005105 7.4e-13 77.4 102 52.0
C05p25960 Brassica napus HOM05D001361 ORTHO05D005105 9.6e-13 77.0 102 52.0
BolC5t31315H Brassica oleracea HOM05D001361 ORTHO05D005105 9.6e-13 77.0 102 52.0
A09p38670 Brassica napus HOM05D001361 ORTHO05D005105 1.3e-12 76.6 102 52.0
AL1G40670 Arabidopsis lyrata HOM05D001361 ORTHO05D005105 1.6e-12 76.3 103 44.7
Sp1g23510 Schrenkiella parvula HOM05D001361 ORTHO05D005105 1.6e-12 76.3 103 51.5
Lsat_1_v5_gn_3_31340 Lactuca sativa HOM05D001361 ORTHO05D005105 2.8e-12 75.5 104 51.0
BcaC05g26734 Brassica carinata HOM05D001361 ORTHO05D005105 3.7e-12 75.1 104 50.0
HanXRQChr06g0174761 Helianthus annuus HOM05D001361 ORTHO05D005105 3.7e-12 75.1 104 49.0
Glyma.18G283800 Glycine max HOM05D001361 ORTHO05D005105 8.2e-12 73.9 104 44.2
arahy.Tifrunner.gnm1.ann1.M9HGBQ Arachis hypogaea HOM05D001361 ORTHO05D005105 1.1e-11 73.6 103 43.7
arahy.Tifrunner.gnm1.ann1.WMQ7N5 Arachis hypogaea HOM05D001361 ORTHO05D005105 1.1e-11 73.6 103 43.7
Prupe.1G223300 Prunus persica HOM05D001361 ORTHO05D005105 1.1e-11 73.6 102 44.1
Aa31LG7G9930 Aethionema arabicum HOM05D001361 ORTHO05D005105 1.4e-11 73.2 103 44.7
CDE06G0592 Ceratophyllum demersum HOM05D001361 ORTHO05D005105 1.4e-11 73.2 64 54.7
Glyma.08G259700 Glycine max HOM05D001361 ORTHO05D005105 1.4e-11 73.2 104 44.2
Ca_07127_v3 Cicer arietinum L. HOM05D001361 ORTHO05D005105 2.4e-11 72.4 75 50.7
Phvul.008G017700 Phaseolus vulgaris HOM05D001361 ORTHO05D005105 2.4e-11 72.4 77 53.2
Lalb_Chr17g0336401 Lupinus albus HOM05D001361 ORTHO05D005105 4.0e-11 71.6 103 41.7
BcaB03g12069 Brassica carinata HOM05D001361 ORTHO05D005105 6.9e-11 70.9 104 49.0
Lalb_Chr10g0092051 Lupinus albus HOM05D001361 ORTHO05D005105 1.2e-10 70.1 103 41.7
SalBow1G0997 Salvia bowleyana HOM05D001361 ORTHO05D005105 2.0e-10 69.3 52 71.2
Psat3g188120 Pisum sativum HOM05D001361 ORTHO05D005105 3.4e-10 68.6 76 47.4
Aqoxy5G03301 Aquilegia oxysepala HOM05D001361 ORTHO05D005105 7.6e-10 67.4 76 50.0
MBI11_g05341_MAGBIO Magnolia biondii HOM05D001361 ORTHO05D005105 7.6e-10 67.4 52 63.5
MD16G1122300 Malus domestica HOM05D001361 ORTHO05D005105 1.3e-09 66.6 104 39.4
PSO017G4710 Papaver somniferum HOM05D001361 ORTHO05D005105 1.7e-09 66.2 79 51.9
RcHm_v2.0_Chr4g0429881 Rosa chinensis HOM05D001361 ORTHO05D005105 3.8e-09 65.1 104 42.3
PSO478G4435 Papaver somniferum HOM05D001361 ORTHO05D005105 6.5e-09 64.3 79 51.9
TPR.G2940 Trifolium pratense HOM05D001361 ORTHO05D005105 8.4e-09 63.9 73 43.8
FAN07G0196 Fragaria x ananassa HOM05D001361 ORTHO05D005105 1.1e-08 63.5 103 41.7
Lj6A829G28 Lonicera japonica HOM05D001361 ORTHO05D005105 1.1e-08 63.5 50 64.0
ECA246G4360 Erigeron canadensis HOM05D001361 ORTHO05D005105 1.4e-08 63.2 84 51.2
MD13G1122000 Malus domestica HOM05D001361 ORTHO05D005105 1.9e-08 62.8 105 38.1
FAN17G0717 Fragaria x ananassa HOM05D001361 ORTHO05D005105 2.5e-08 62.4 104 40.4
FAN12G2218 Fragaria x ananassa HOM05D001361 ORTHO05D005105 4.2e-08 61.6 104 40.4
FvH4_4g23490 Fragaria vesca HOM05D001361 ORTHO05D005105 1.2e-07 60.1 104 40.4
Ciclev10031908m.g Citrus clementina HOM05D001361 ORTHO05D005105 8.7e-06 53.9 105 40.0


User provided reference genes

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