Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold258G45779 Striga asiatica HOM05D004708 ORTHO05D005573 1.2e-192 676.4 357 100.0
MSTRG.23511 Avicennia marina HOM05D004708 ORTHO05D005573 2.1e-72 276.9 178 80.3
SalBow6G2211 Salvia bowleyana HOM05D004708 ORTHO05D005573 6.4e-69 265.4 178 76.4
Cc07_g09720 Coffea canephora HOM05D004708 ORTHO05D005573 4.6e-67 259.2 171 78.9
Actinidia19193 Actinidia chinensis HOM05D004708 ORTHO05D005573 4.3e-65 252.7 173 75.1
vmacro17822 Vaccinium macrocarpon HOM05D004708 ORTHO05D005573 5.6e-65 252.3 167 77.8
Dinv13509 Davidia involucrata HOM05D004708 ORTHO05D005573 2.1e-64 250.4 173 74.0
Nitab4.5_0000136g0310 Nicotiana tabacum HOM05D004708 ORTHO05D005573 2.8e-64 250.0 166 77.1
Migut.H00962 Erythranthe guttata HOM05D004708 ORTHO05D005573 6.2e-64 248.8 166 77.1
Hund16439 Selenicereus undatus HOM05D004708 ORTHO05D005573 6.2e-64 248.8 169 72.8
Peaxi162Scf00008g03516 Petunia axillaris HOM05D004708 ORTHO05D005573 1.4e-63 247.7 164 77.4
PGSC0003DMG400015508 Solanum tuberosum HOM05D004708 ORTHO05D005573 1.4e-63 247.7 168 75.0
QL06p046600 Quercus lobata HOM05D004708 ORTHO05D005573 2.3e-63 246.9 173 74.0
unitig_21.g20250 Utricularia gibba HOM05D004708 ORTHO05D005573 4.0e-63 246.1 168 77.4
HanXRQChr09g0261341 Helianthus annuus HOM05D004708 ORTHO05D005573 5.2e-63 245.7 166 76.5
Cpa.g.sc6.137 Carica papaya HOM05D004708 ORTHO05D005573 1.5e-62 244.2 172 73.3
Ciclev10026600m.g Citrus clementina HOM05D004708 ORTHO05D005573 2.0e-62 243.8 169 73.4
Rhsim08G0118600 Rhododendron simsii HOM05D004708 ORTHO05D005573 2.0e-62 243.8 184 71.2
Solyc02g062640.4 Solanum lycopersicum HOM05D004708 ORTHO05D005573 2.0e-62 243.8 168 73.8
CSS0030971 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 3.4e-62 243.0 162 77.2
CSS0040556 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 3.4e-62 243.0 174 70.7
Sopen02g013670 Solanum pennellii HOM05D004708 ORTHO05D005573 4.4e-62 242.7 168 73.2
Duzib084G0089 Durio zibethinus HOM05D004708 ORTHO05D005573 7.5e-62 241.9 172 72.1
Atru.chr3.607 Acer truncatum HOM05D004708 ORTHO05D005573 1.3e-61 241.1 167 73.7
CAN.G111.48 Capsicum annuum HOM05D004708 ORTHO05D005573 1.3e-61 241.1 166 74.1
GSVIVG01018936001 Vitis vinifera HOM05D004708 ORTHO05D005573 1.3e-61 241.1 183 68.3
AL3G51520 Arabidopsis lyrata HOM05D004708 ORTHO05D005573 2.2e-61 240.4 167 71.9
AT2G18250 Arabidopsis thaliana HOM05D004708 ORTHO05D005573 2.2e-61 240.4 167 71.9
Hma1.2p1_0789F.1_g218250 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 2.2e-61 240.4 184 70.1
Potri.005G121200 Populus trichocarpa HOM05D004708 ORTHO05D005573 2.2e-61 240.4 177 71.8
Thecc.03G010200 Theobroma cacao HOM05D004708 ORTHO05D005573 2.2e-61 240.4 167 73.7
Carub.0003s3243 Capsella rubella HOM05D004708 ORTHO05D005573 4.9e-61 239.2 166 71.7
MD02G1144700 Malus domestica HOM05D004708 ORTHO05D005573 6.4e-61 238.8 172 71.5
GSVIVG01025946001 Vitis vinifera HOM05D004708 ORTHO05D005573 6.4e-61 238.8 165 72.7
Gorai.008G067200 Gossypium raimondii HOM05D004708 ORTHO05D005573 8.3e-61 238.4 169 72.8
Lsat_1_v5_gn_4_148240 Lactuca sativa HOM05D004708 ORTHO05D005573 8.3e-61 238.4 164 74.4
Manes.01G136850 Manihot esculenta HOM05D004708 ORTHO05D005573 8.3e-61 238.4 169 71.0
Sc16g0002660 Simmondsia chinensis HOM05D004708 ORTHO05D005573 1.1e-60 238.0 168 70.8
AUR62004070 Chenopodium quinoa HOM05D004708 ORTHO05D005573 1.9e-60 237.3 167 71.9
ECA232G2192 Erigeron canadensis HOM05D004708 ORTHO05D005573 2.4e-60 236.9 165 74.5
Hma1.2p1_0224F.1_g094553 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 2.4e-60 236.9 171 71.3
Duzib264G1087 Durio zibethinus HOM05D004708 ORTHO05D005573 3.2e-60 236.5 169 73.4
Thhalv10022875m.g Eutrema salsugineum HOM05D004708 ORTHO05D005573 4.1e-60 236.1 167 70.1
CiPaw.01G043700 Carya illinoinensis HOM05D004708 ORTHO05D005573 7.1e-60 235.3 185 67.6
Gohir.A09G170800 Gossypium hirsutum HOM05D004708 ORTHO05D005573 1.2e-59 234.6 169 71.0
COL.COLO4_34048 Corchorus olitorius HOM05D004708 ORTHO05D005573 1.6e-59 234.2 171 69.6
Thecc.01G032800 Theobroma cacao HOM05D004708 ORTHO05D005573 1.6e-59 234.2 172 70.3
Aa31LG8G15760 Aethionema arabicum HOM05D004708 ORTHO05D005573 2.1e-59 233.8 176 68.2
MD15G1258400 Malus domestica HOM05D004708 ORTHO05D005573 2.1e-59 233.8 169 71.0
TWI53G1618 Tripterygium wilfordii HOM05D004708 ORTHO05D005573 2.1e-59 233.8 169 70.4
A07p02450 Brassica napus HOM05D004708 ORTHO05D005573 2.7e-59 233.4 169 69.2
BraA07t28041Z Brassica rapa HOM05D004708 ORTHO05D005573 2.7e-59 233.4 169 69.2
AUR62007583 Chenopodium quinoa HOM05D004708 ORTHO05D005573 2.7e-59 233.4 167 71.9
EL10Ac6g15543 Beta vulgaris HOM05D004708 ORTHO05D005573 4.6e-59 232.6 172 70.3
CARHR108820 Cardamine hirsuta HOM05D004708 ORTHO05D005573 4.6e-59 232.6 167 69.5
Gorai.006G188300 Gossypium raimondii HOM05D004708 ORTHO05D005573 6.0e-59 232.3 169 69.8
ClCG05G006010 Citrullus lanatus HOM05D000319 ORTHO05D000903 7.8e-59 231.9 167 70.7
COL.COLO4_22050 Corchorus olitorius HOM05D004708 ORTHO05D005573 7.8e-59 231.9 168 73.2
Prupe.7G156900 Prunus persica HOM05D004708 ORTHO05D005573 7.8e-59 231.9 172 70.9
BcaB07g31677 Brassica carinata HOM05D004708 ORTHO05D005573 1.0e-58 231.5 162 71.6
Aqoxy3G01739 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 1.3e-58 231.1 169 68.6
BcaB03g16615 Brassica carinata HOM05D004708 ORTHO05D005573 2.3e-58 230.3 169 69.8
BcaC06g36391 Brassica carinata HOM05D004708 ORTHO05D005573 2.3e-58 230.3 169 68.6
DCAR_023857 Daucus carota HOM05D004708 ORTHO05D005573 2.3e-58 230.3 174 66.1
Hund13990 Selenicereus undatus HOM05D004708 ORTHO05D005573 2.3e-58 230.3 172 68.6
Aqoxy5G01592 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 3.0e-58 229.9 162 71.0
CAN.G1645.15 Capsicum annuum HOM05D004708 ORTHO05D005573 3.0e-58 229.9 160 73.8
BcaC04g22917 Brassica carinata HOM05D004708 ORTHO05D005573 5.1e-58 229.2 162 71.0
BolC9t54282H Brassica oleracea HOM05D004708 ORTHO05D005573 5.1e-58 229.2 162 71.0
Manes.02G095600 Manihot esculenta HOM05D004708 ORTHO05D005573 1.5e-57 227.6 169 68.6
Sp3g31670 Schrenkiella parvula HOM05D004708 ORTHO05D005573 1.9e-57 227.3 169 67.5
BolC7t40861H Brassica oleracea HOM05D004708 ORTHO05D005573 2.5e-57 226.9 169 68.0
DCAR_032374 Daucus carota HOM05D004708 ORTHO05D005573 2.5e-57 226.9 169 66.3
C07p04600 Brassica napus HOM05D004708 ORTHO05D005573 5.6e-57 225.7 169 67.5
ATR0796G251 Amborella trichopoda HOM05D004708 ORTHO05D005573 9.5e-57 224.9 171 64.9
FvH4_1g13011 Fragaria vesca HOM05D004708 ORTHO05D005573 2.1e-56 223.8 174 66.7
CsaV3_3G014460 Cucumis sativus L. HOM05D004708 ORTHO05D005573 8.1e-56 221.9 168 69.0
RcHm_v2.0_Chr2g0101171 Rosa chinensis HOM05D004708 ORTHO05D005573 1.4e-55 221.1 167 66.5
Zm00001eb231510 Zea mays HOM05D004708 ORTHO05D005573 1.4e-55 221.1 162 66.0
MELO3C006648.2 Cucumis melo HOM05D004708 ORTHO05D005573 1.8e-55 220.7 167 68.9
PGR119G0658 Punica granatum HOM05D004708 ORTHO05D005573 2.3e-55 220.3 169 67.5
SEGI_37374 Sequoiadendron giganteum HOM05D004708 ORTHO05D005573 3.1e-55 219.9 175 63.4
Lsat_1_v5_gn_2_77221 Lactuca sativa HOM05D004708 ORTHO05D005573 4.4e-54 216.1 164 67.7
Lalb_Chr05g0212721 Lupinus albus HOM05D004708 ORTHO05D005573 7.6e-54 215.3 176 63.6
Medtr8g073890 Medicago truncatula HOM05D004708 ORTHO05D005573 7.6e-54 215.3 164 68.9
MD15G1258500 Malus domestica HOM05D004708 ORTHO05D005573 1.7e-53 214.2 172 64.0
Os07g0179400 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 2.9e-53 213.4 162 68.5
Sabra05G0099900 Salix brachista HOM05D004708 ORTHO05D005573 2.9e-53 213.4 222 56.8
TAR624G0473 Trochodendron aralioides HOM05D004708 ORTHO05D005573 3.8e-53 213.0 183 61.7
Lj2g0001027 Lotus japonicus HOM05D002605 ORTHO05D002842 4.9e-53 212.6 164 65.9
PSO764G0091 Papaver somniferum HOM05D004708 ORTHO05D005573 4.9e-53 212.6 163 67.5
THA.LOC104807464 Tarenaya hassleriana HOM05D004708 ORTHO05D005573 8.4e-53 211.8 186 60.8
VMungo1215G3002 Vigna mungo HOM05D004708 ORTHO05D005573 1.1e-52 211.5 166 63.3
arahy.Tifrunner.gnm1.ann1.V6C6W3 Arachis hypogaea HOM05D004708 ORTHO05D005573 1.9e-52 210.7 164 66.5
Ca_24863_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 1.9e-52 210.7 164 66.5
Medtr5g020680 Medicago truncatula HOM05D004708 ORTHO05D005573 1.9e-52 210.7 164 67.7
PSO339G0290 Papaver somniferum HOM05D004708 ORTHO05D005573 1.9e-52 210.7 161 67.7
arahy.Tifrunner.gnm1.ann1.Y7U3HW Arachis hypogaea HOM05D004708 ORTHO05D005573 2.4e-52 210.3 164 65.9
arahy.Tifrunner.gnm1.ann1.CZ32YF Arachis hypogaea HOM05D004708 ORTHO05D005573 5.4e-52 209.1 164 66.5
ECA238G4849 Erigeron canadensis HOM05D004708 ORTHO05D005573 1.2e-51 208.0 165 63.6
Glyma.01G173050 Glycine max HOM05D004708 ORTHO05D005573 3.5e-51 206.5 166 63.3
Ca_21297_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 4.6e-51 206.1 164 65.2
Psat2g158360 Pisum sativum HOM05D004708 ORTHO05D005573 4.6e-51 206.1 163 63.2
FAN25G0668 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.0e-50 204.9 167 63.5
TPR.G2405 Trifolium pratense HOM05D004708 ORTHO05D005573 1.0e-50 204.9 164 64.0
Phvul.002G032200 Phaseolus vulgaris HOM05D004708 ORTHO05D005573 1.7e-50 204.1 164 61.6
Dinv39998 Davidia involucrata HOM05D004708 ORTHO05D005573 5.1e-50 202.6 173 64.2
Hma1.2p1_1820F.1_g304110 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 1.5e-49 201.1 148 71.6
Gohir.A12G064100 Gossypium hirsutum HOM05D004708 ORTHO05D005573 4.3e-49 199.5 169 65.1
CDE12G0116 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 7.3e-49 198.7 158 63.9
HPP92_014750 Vanilla planifolia HOM05D004708 ORTHO05D005573 9.6e-49 198.4 157 63.7
CDE01G0816 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 1.2e-48 198.0 160 64.4
FAN19G0555 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.6e-48 197.6 207 55.1
arahy.Tifrunner.gnm1.ann1.KFYL3R Arachis hypogaea HOM05D004708 ORTHO05D005573 2.1e-48 197.2 164 64.6
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 2.8e-48 196.8 166 60.2
Gohir.D09G166500 Gossypium hirsutum HOM05D004708 ORTHO05D005573 2.9e-45 186.8 176 59.1
SMO357G0013 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 3.8e-45 186.4 158 63.9
Pp3c18_16890 Physcomitrium patens HOM05D004708 ORTHO05D005573 6.4e-45 185.7 167 57.5
SMO318G0001 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 1.9e-44 184.1 174 58.0
C09p13900 Brassica napus HOM05D004708 ORTHO05D005573 6.0e-43 179.1 162 58.6
Glyma.02G276900 Glycine max HOM05D004708 ORTHO05D005573 7.8e-43 178.7 139 63.3
BcaC04g22919 Brassica carinata HOM05D004708 ORTHO05D005573 1.0e-42 178.3 190 52.6
A09p11790 Brassica napus HOM05D004708 ORTHO05D005573 8.7e-42 175.3 138 66.7
CARHR108850 Cardamine hirsuta HOM05D004708 ORTHO05D005573 9.6e-41 171.8 128 66.4
Gohir.D12G064000 Gossypium hirsutum HOM05D004708 ORTHO05D005573 5.3e-39 166.0 106 73.6
FvH4_3g26020 Fragaria vesca HOM05D004708 ORTHO05D005573 6.9e-39 165.6 138 60.9
Mapoly0065s0018 Marchantia polymorpha HOM05D004708 ORTHO05D005573 6.9e-39 165.6 158 57.0
CSS0019358 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 1.5e-38 164.5 118 75.4
Nitab4.5_0009165g0010 Nicotiana tabacum HOM05D000001 ORTHO05D013582 2.0e-38 164.1 112 79.5
Peaxi162Scf00130g00618 Petunia axillaris HOM05D004708 ORTHO05D005573 4.9e-37 159.5 162 53.1
Zm00001eb301320 Zea mays HOM05D004708 ORTHO05D005573 3.2e-36 156.8 166 51.2
Lj2A454G55 Lonicera japonica HOM05D004708 ORTHO05D005573 4.6e-35 152.9 142 61.3
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 8.7e-34 148.7 167 51.5
Nn7g38122 Nelumbo nucifera HOM05D004708 ORTHO05D005573 1.9e-33 147.5 98 67.3
PSO731G0046 Papaver somniferum HOM05D004708 ORTHO05D005573 2.1e-32 144.1 120 64.2
Os02g0134000 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 3.7e-32 143.3 115 63.5
PSO384G2349 Papaver somniferum HOM05D004708 ORTHO05D005573 8.1e-32 142.1 162 52.5
CBR_g4476 Chara braunii HOM05D003322 ORTHO05D004228 9.0e-31 138.7 165 46.7
BraA09t36827Z Brassica rapa HOM05D004708 ORTHO05D005573 5.5e-28 129.4 111 64.0
Actinidia33865 Actinidia chinensis HOM05D004708 ORTHO05D005573 4.6e-27 126.3 97 71.1
CAN.G2875.1 Capsicum annuum HOM05D004708 ORTHO05D005573 6.7e-26 122.5 98 69.4
SGA_v2.0_scaffold276G46612 Striga asiatica HOM05D004708 ORTHO05D005573 1.4e-23 114.8 124 60.5
FAN26G2067 Fragaria x ananassa HOM05D004708 ORTHO05D005573 2.4e-23 114.0 75 69.3
Pp3c18_18790 Physcomitrium patens HOM05D004708 ORTHO05D005573 9.0e-23 112.1 167 41.3
AagrBONN_evm.TU.Sc2ySwM_228.2017 Anthoceros agrestis HOM05D004708 ORTHO05D005573 1.2e-22 111.7 117 53.0
HanXRQChr17g0534461 Helianthus annuus HOM05D004708 ORTHO05D005573 1.8e-18 97.8 59 76.3
Cre13.g590550 Chlamydomonas reinhardtii HOM05D004708 ORTHO05D005573 3.9e-18 96.7 194 34.5
arahy.Tifrunner.gnm1.ann1.W5EA8A Arachis hypogaea HOM05D004708 ORTHO05D005573 1.5e-17 94.7 91 60.4
CAN.G53.14 Capsicum annuum HOM05D004708 ORTHO05D005573 3.3e-17 93.6 56 75.0
AagrBONN_evm.TU.Sc2ySwM_368.1168 Anthoceros agrestis HOM05D004708 ORTHO05D005573 4.1e-15 86.7 75 60.0
CAN.G53.15 Capsicum annuum HOM05D004708 ORTHO05D005573 1.5e-14 84.7 55 83.6
MCO08G231 Micromonas commoda HOM05D004708 ORTHO05D005573 2.6e-14 84.0 170 32.9
BcaC06g36392 Brassica carinata HOM05D000492 ORTHO05D005571 3.8e-13 80.1 61 67.2
C09p74780 Brassica napus HOM05D004708 ORTHO05D005573 1.4e-12 78.2 68 61.8
C09p74830 Brassica napus HOM05D004708 ORTHO05D005573 1.4e-12 78.2 68 61.8
Oeu044133.1 Olea europaea HOM05D004708 ORTHO05D005573 4.6e-11 73.2 42 85.7
Cfa027114 Carpinus fangiana HOM05D004708 ORTHO05D005573 6.7e-10 69.3 205 26.3
PRCOL_00004729 Prasinoderma coloniale HOM05D004708 ORTHO05D005573 1.1e-09 68.6 193 30.6
Actinidia12710 Actinidia chinensis HOM05D004708 ORTHO05D005573 1.3e-08 65.1 48 66.7


User provided reference genes

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