Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 4.4e-245 850.9 439 100.0
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 4.7e-207 724.5 448 84.6
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 1.4e-206 723.0 448 84.6
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 2.8e-199 698.7 449 84.0
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 1.1e-192 676.8 448 80.8
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 9.5e-192 673.7 448 79.5
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 3.6e-191 671.8 450 78.9
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 3.6e-191 671.8 448 80.6
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 6.2e-191 671.0 453 80.4
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 8.1e-191 670.6 448 79.0
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 1.4e-190 669.8 448 79.5
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 1.8e-190 669.5 448 79.5
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 3.1e-190 668.7 403 84.4
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 4.0e-190 668.3 449 79.3
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 5.2e-190 667.9 450 78.9
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 5.2e-190 667.9 448 79.2
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 6.8e-190 667.5 448 77.2
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 8.9e-190 667.2 449 78.8
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.2e-189 666.8 448 78.6
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 1.5e-189 666.4 449 79.3
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 2.0e-189 666.0 448 79.2
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 5.8e-189 664.5 448 78.3
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 5.8e-189 664.5 448 77.0
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 9.9e-189 663.7 446 79.6
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 9.9e-189 663.7 449 79.3
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 1.3e-188 663.3 447 79.0
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 1.3e-188 663.3 448 77.5
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 2.2e-188 662.5 447 78.7
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 2.9e-188 662.1 446 78.3
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 2.9e-188 662.1 446 78.7
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 6.4e-188 661.0 448 78.6
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 6.4e-188 661.0 446 78.0
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 6.4e-188 661.0 448 77.9
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 8.4e-188 660.6 446 79.4
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 8.4e-188 660.6 447 77.9
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 8.4e-188 660.6 453 77.3
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.4e-187 659.8 446 77.8
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.9e-187 659.4 446 79.4
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 2.4e-187 659.1 449 78.0
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 3.2e-187 658.7 432 79.4
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 3.2e-187 658.7 451 77.2
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 4.2e-187 658.3 447 77.6
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 7.1e-187 657.5 447 78.3
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 9.2e-187 657.1 448 78.1
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 1.2e-186 656.8 449 78.4
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 1.2e-186 656.8 446 78.0
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 1.2e-186 656.8 447 78.7
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 1.6e-186 656.4 448 77.5
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 3.5e-186 655.2 449 77.7
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 4.6e-186 654.8 448 78.1
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 6.0e-186 654.4 446 76.7
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 7.8e-186 654.1 448 78.3
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 1.0e-185 653.7 449 77.7
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 1.3e-185 653.3 440 77.7
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.3e-185 653.3 448 77.0
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 3.9e-185 651.7 439 78.4
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 5.1e-185 651.4 447 78.1
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 6.6e-185 651.0 446 78.3
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 6.6e-185 651.0 446 78.3
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 6.6e-185 651.0 448 77.7
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.1e-184 650.2 445 77.8
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 2.5e-184 649.0 448 76.1
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 2.5e-184 649.0 444 76.6
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 2.5e-184 649.0 446 76.5
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 3.3e-184 648.7 448 77.5
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 3.3e-184 648.7 449 77.3
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 4.3e-184 648.3 448 75.9
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 4.3e-184 648.3 448 77.7
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 9.6e-184 647.1 447 77.2
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 6.2e-183 644.4 445 76.4
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 8.1e-183 644.0 447 75.4
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.1e-182 643.7 449 76.6
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.1e-182 643.7 432 78.0
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 2.0e-181 639.4 448 76.6
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 4.4e-181 638.3 447 74.9
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 9.9e-181 637.1 448 75.9
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 1.3e-180 636.7 447 75.8
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 3.8e-180 635.2 400 81.5
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 6.4e-180 634.4 446 74.9
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 6.4e-180 634.4 395 80.5
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 1.1e-179 633.6 446 74.9
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 3.2e-179 632.1 446 76.2
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 3.2e-179 632.1 446 76.2
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 3.2e-179 632.1 395 80.0
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 7.1e-179 630.9 448 75.2
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 9.3e-179 630.6 451 73.2
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 2.7e-178 629.0 448 74.8
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 8.7e-177 624.0 447 73.4
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 8.7e-177 624.0 401 79.8
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 1.9e-176 622.9 445 73.7
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 3.3e-176 622.1 402 79.1
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 5.6e-176 621.3 446 74.0
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 7.3e-176 620.9 401 78.8
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 7.3e-176 620.9 401 78.8
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.6e-175 619.8 448 73.9
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 3.6e-175 618.6 402 79.4
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 6.2e-175 617.8 402 79.4
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 1.1e-174 617.1 401 79.1
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 4.0e-174 615.1 401 78.8
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 4.0e-174 615.1 401 78.8
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 4.0e-174 615.1 388 79.9
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 1.5e-173 613.2 446 74.2
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 2.0e-173 612.8 451 73.8
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 7.6e-173 610.9 448 73.0
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 7.6e-173 610.9 448 73.0
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 9.9e-173 610.5 377 80.6
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.3e-172 610.1 435 74.7
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 1.7e-172 609.8 446 73.1
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 2.9e-172 609.0 420 76.9
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.1e-171 607.1 391 80.1
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 5.4e-171 604.7 414 73.7
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 1.6e-170 603.2 377 79.8
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 3.5e-170 602.1 397 78.1
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.0e-169 600.5 467 68.5
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.1e-168 597.0 490 66.9
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 5.6e-168 594.7 401 75.3
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 2.0e-165 586.3 439 70.4
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 3.2e-163 578.9 475 65.9
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 4.2e-163 578.6 441 71.7
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.5e-160 570.1 386 78.5
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 7.4e-160 567.8 448 69.4
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 2.0e-149 533.1 352 79.3
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 1.0e-148 530.8 350 78.6
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 1.4e-147 526.9 397 68.0
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 2.5e-144 516.2 361 74.5
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 4.3e-144 515.4 383 66.8
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 5.3e-142 508.4 307 84.7
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 4.5e-141 505.4 382 65.2
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 1.4e-137 493.8 365 66.0
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 4.4e-136 488.8 409 61.6
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 9.7e-136 487.6 376 65.2
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.3e-135 487.3 376 65.2
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 6.3e-135 485.0 425 59.8
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 3.5e-133 479.2 361 68.1
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 7.7e-133 478.0 370 64.1
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 1.3e-132 477.2 425 60.2
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 2.2e-132 476.5 361 66.5
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 3.2e-131 472.6 365 63.6
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 1.6e-130 470.3 365 62.2
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 6.7e-129 464.9 371 60.6
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 7.0e-126 454.9 371 60.4
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 1.2e-122 444.1 317 73.5
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 5.2e-121 438.7 360 60.6
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 2.2e-111 406.8 365 59.5
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 2.1e-90 337.0 359 52.1
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.8e-89 334.0 295 60.7
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 8.6e-76 288.5 226 66.8
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 7.6e-72 275.4 320 46.2
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 4.4e-64 249.6 204 67.6
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 1.6e-58 231.1 200 59.5
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 2.1e-58 230.7 123 87.8
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 2.1e-53 214.2 157 75.2
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 6.7e-52 209.1 152 68.4
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 4.5e-40 169.9 162 54.3
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 1.0e-36 158.7 119 68.1
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 5.1e-36 156.4 119 67.2
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 1.9e-30 137.9 105 71.4
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 4.6e-29 133.3 82 82.9
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 1.5e-27 128.3 75 84.0
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.2e-21 108.6 80 65.0
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 7.9e-21 105.9 74 63.5
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 6.7e-20 102.8 51 92.2
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 1.6e-13 81.6 71 53.5
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 1.3e-07 62.0 35 82.9


User provided reference genes

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