Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 0.0e+00 1218.8 666 100.0
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 7.1e-122 442.2 674 46.0
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 1.4e-109 401.4 686 43.9
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 9.0e-109 398.7 679 45.2
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 4.0e-101 373.2 648 45.5
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 1.2e-97 361.7 670 40.0
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 1.1e-90 338.6 556 42.6
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 1.2e-89 335.1 701 38.8
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 1.5e-87 328.2 688 39.8
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 9.7e-87 325.5 663 39.5
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 3.1e-85 320.5 677 36.6
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 7.7e-84 315.8 681 36.4
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 2.5e-82 310.8 687 35.8
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 1.4e-80 305.1 677 37.2
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 6.7e-80 302.8 348 54.3
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 6.7e-80 302.8 705 37.4
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 6.7e-80 302.8 671 38.5
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 1.1e-79 302.0 662 37.6
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 2.0e-79 301.2 700 36.4
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 4.4e-79 300.1 675 37.0
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.7e-78 298.1 683 36.2
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 8.2e-78 295.8 685 36.2
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 8.2e-78 295.8 707 35.2
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 1.1e-77 295.4 704 34.9
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 2.4e-77 294.3 687 34.9
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 2.0e-76 291.2 666 38.6
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 2.0e-76 291.2 677 36.0
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 3.4e-76 290.4 666 35.4
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.9e-75 287.3 671 36.1
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 8.5e-75 285.8 616 37.5
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 1.1e-74 285.4 719 34.1
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 2.5e-74 284.3 670 35.8
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 1.6e-73 281.6 681 37.2
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 3.6e-73 280.4 676 36.4
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 1.4e-72 278.5 672 33.9
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 1.8e-72 278.1 691 35.3
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 3.0e-72 277.3 666 34.8
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 3.0e-72 277.3 696 35.2
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 1.1e-71 275.4 715 34.5
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 2.0e-71 274.6 406 43.8
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.0e-71 274.6 669 36.8
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 2.6e-71 274.2 709 36.8
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.3e-71 273.9 665 35.3
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 9.7e-71 272.3 331 48.6
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 2.2e-70 271.2 702 34.8
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.2e-70 271.2 666 34.7
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 2.4e-69 267.7 725 34.9
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 9.1e-69 265.8 685 33.9
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.2e-68 265.4 685 34.2
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.6e-68 265.0 693 34.2
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 5.9e-68 263.1 677 35.9
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 1.3e-67 261.9 725 33.8
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.7e-67 261.5 663 34.7
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 5.0e-67 260.0 667 34.8
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 5.0e-67 260.0 715 33.6
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 3.2e-66 257.3 725 33.0
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 7.2e-66 256.1 664 33.9
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 1.2e-65 255.4 677 31.8
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.2e-65 255.4 683 34.7
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.1e-65 254.6 675 34.8
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 3.6e-65 253.8 685 35.6
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 4.7e-65 253.4 663 34.2
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 6.1e-65 253.1 681 35.4
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 1.8e-64 251.5 720 33.5
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 1.8e-64 251.5 707 33.7
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 8.8e-64 249.2 675 35.1
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 1.2e-63 248.8 283 53.4
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 2.0e-63 248.1 698 33.2
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 2.0e-63 248.1 695 31.7
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 3.3e-63 247.3 726 35.1
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 3.3e-63 247.3 415 40.5
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 5.7e-63 246.5 821 30.5
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 9.7e-63 245.7 662 33.2
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 9.7e-63 245.7 690 32.8
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 2.2e-62 244.6 676 33.0
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 2.8e-62 244.2 339 46.6
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 1.1e-61 242.3 664 34.2
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 2.4e-61 241.1 664 32.8
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.2e-60 238.8 696 31.5
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 2.0e-60 238.0 665 32.8
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 2.0e-60 238.0 340 46.5
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 3.5e-60 237.3 672 32.1
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 4.5e-60 236.9 665 34.6
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 4.5e-60 236.9 773 30.3
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 7.7e-60 236.1 665 33.5
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 1.3e-59 235.3 684 32.3
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 2.9e-59 234.2 669 35.9
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 1.1e-58 232.3 661 33.0
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 1.1e-58 232.3 663 33.5
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 7.2e-58 229.6 703 31.2
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 2.1e-57 228.0 669 33.0
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.4e-56 225.3 284 50.7
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 2.3e-56 224.6 659 35.8
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 3.0e-56 224.2 682 30.6
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 5.2e-56 223.4 662 32.8
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 5.2e-56 223.4 660 32.0
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.2e-55 222.2 660 32.9
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 1.7e-54 218.4 679 31.2
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 4.8e-54 216.9 666 30.8
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 1.8e-53 214.9 688 31.2
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 2.4e-53 214.5 327 43.1
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 7.0e-53 213.0 327 42.8
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 7.0e-53 213.0 563 36.8
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 2.0e-52 211.5 660 34.2
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 2.7e-52 211.1 327 42.2
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 2.7e-52 211.1 327 42.2
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 2.7e-52 211.1 666 31.2
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 3.5e-52 210.7 660 33.9
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 4.5e-52 210.3 659 34.7
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 1.0e-51 209.1 669 31.2
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 1.7e-51 208.4 693 30.3
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 1.7e-51 208.4 682 32.6
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 6.6e-51 206.5 687 29.1
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 1.1e-50 205.7 426 37.3
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 2.5e-50 204.5 658 33.4
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 3.3e-50 204.1 327 45.6
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 1.0e-48 199.1 666 30.2
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 1.8e-48 198.4 661 30.6
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 4.0e-48 197.2 685 29.3
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 6.8e-48 196.4 668 30.8
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 6.8e-48 196.4 291 43.0
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 6.8e-48 196.4 291 43.0
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 1.7e-46 191.8 280 43.9
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 1.4e-45 188.7 678 29.4
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 9.2e-45 186.0 488 33.4
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 1.2e-44 185.7 688 31.2
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 2.0e-44 184.9 232 50.0
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 3.8e-43 180.6 660 30.6
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 1.1e-42 179.1 232 48.7
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 1.2e-41 175.6 683 28.4
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 2.8e-41 174.5 561 31.4
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 7.5e-39 166.4 370 37.8
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 2.2e-38 164.9 688 29.8
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 3.7e-38 164.1 661 28.0
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 1.1e-37 162.5 622 28.3
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 3.2e-37 161.0 281 39.1
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 8.6e-35 152.9 619 32.1
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 2.5e-34 151.4 481 29.5
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 3.3e-34 151.0 593 28.7
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 4.3e-34 150.6 175 54.3
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 4.7e-33 147.1 482 29.9
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 4.0e-32 144.1 292 36.3
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 8.9e-32 142.9 276 38.8
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 8.9e-32 142.9 241 36.1
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 2.6e-31 141.4 634 28.5
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 2.5e-26 124.8 332 34.3
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.5e-23 115.5 195 41.0
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 3.4e-23 114.4 263 32.3
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 1.0e-19 102.8 224 39.3
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 3.0e-19 101.3 122 50.0
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 2.1e-17 95.1 249 33.3
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 2.8e-17 94.7 197 37.6
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 2.8e-17 94.7 275 27.6
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 4.7e-17 94.0 301 37.5
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 2.2e-14 85.1 79 58.2
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 9.2e-13 79.7 141 36.2
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 2.7e-12 78.2 512 24.4
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 6.0e-12 77.0 160 36.9
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 7.8e-12 76.6 91 46.2
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 1.1e-10 72.8 57 61.4
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 1.1e-10 72.8 57 61.4
VMungo0720G2446 Vigna mungo HOM05D004018 ORTHO05D004408 1.1e-10 72.8 57 66.7
BcaC05g24545 Brassica carinata HOM05D001026 ORTHO05D007776 4.3e-10 70.9 71 57.7
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.6e-09 68.9 130 38.5
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 2.1e-09 68.6 59 54.2
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 1.1e-08 66.2 111 41.4
Peaxi162Scf00145g00517 Petunia axillaris HOM05D004018 ORTHO05D004408 2.4e-08 65.1 100 40.0
AT5G64980 Arabidopsis thaliana HOM05D008017 ORTHO05D009829 4.0e-08 64.3 52 59.6
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 4.0e-08 64.3 144 38.2
AL8G42480 Arabidopsis lyrata HOM05D008017 ORTHO05D009829 5.3e-08 63.9 52 59.6
Carub.0008s2581 Capsella rubella HOM05D008017 ORTHO05D009829 2.0e-07 62.0 61 52.5
PGR031G1662 Punica granatum HOM05D004018 ORTHO05D004408 2.6e-07 61.6 102 39.2
C03p61050 Brassica napus HOM05D008017 ORTHO05D009829 1.3e-06 59.3 79 44.3
BolC3t18367H Brassica oleracea HOM05D008017 ORTHO05D009829 1.3e-06 59.3 79 44.3
BraA06t26123Z Brassica rapa HOM05D008017 ORTHO05D009829 1.7e-06 58.9 50 54.0
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 2.2e-06 58.5 164 31.1
Sp2g28160 Schrenkiella parvula HOM05D008017 ORTHO05D009829 2.9e-06 58.2 74 40.5
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 3.8e-06 57.8 67 44.8
A06p31900 Brassica napus HOM05D008017 ORTHO05D009829 4.9e-06 57.4 50 52.0
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 6.4e-06 57.0 164 28.0
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 6.4e-06 57.0 76 44.7


User provided reference genes

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