Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 2.4e-76 288.9 159 100.0
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 2.7e-27 125.9 168 49.4
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 7.1e-20 101.3 156 49.4
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 1.6e-19 100.1 164 50.0
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 2.7e-19 99.4 163 44.2
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 2.5e-17 92.8 157 41.4
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 3.3e-17 92.4 155 47.7
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 4.3e-17 92.0 180 42.2
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 1.3e-16 90.5 163 35.0
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 2.8e-16 89.4 164 42.7
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 2.8e-16 89.4 160 35.6
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 3.6e-16 89.0 163 43.6
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 1.8e-15 86.7 153 36.6
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 1.8e-15 86.7 158 43.7
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 3.1e-15 85.9 176 40.9
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 3.1e-15 85.9 160 33.1
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 4.0e-15 85.5 65 50.8
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 5.3e-15 85.1 56 51.8
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 6.9e-15 84.7 155 36.1
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 6.9e-15 84.7 157 47.1
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.5e-14 83.6 154 31.2
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 3.4e-14 82.4 156 42.9
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 3.4e-14 82.4 111 45.9
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 4.4e-14 82.0 167 44.3
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 7.6e-14 81.3 129 50.4
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 9.9e-14 80.9 120 42.5
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 9.9e-14 80.9 53 54.7
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 1.3e-13 80.5 157 37.6
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 1.7e-13 80.1 169 33.7
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 1.7e-13 80.1 50 62.0
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 2.2e-13 79.7 130 50.0
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 2.2e-13 79.7 49 57.1
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 4.9e-13 78.6 52 51.9
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 4.9e-13 78.6 132 50.0
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 6.4e-13 78.2 58 48.3
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 6.4e-13 78.2 58 48.3
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 6.4e-13 78.2 151 43.0
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 6.4e-13 78.2 157 45.2
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 1.1e-12 77.4 150 39.3
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 1.1e-12 77.4 163 41.7
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 1.4e-12 77.0 164 34.8
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 1.4e-12 77.0 153 31.4
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 1.9e-12 76.6 49 55.1
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.9e-12 76.6 53 49.1
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 2.4e-12 76.3 57 49.1
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 2.4e-12 76.3 57 49.1
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 2.4e-12 76.3 57 47.4
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 2.4e-12 76.3 58 48.3
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 3.2e-12 75.9 57 47.4
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 3.2e-12 75.9 57 47.4
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 3.2e-12 75.9 57 47.4
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 4.2e-12 75.5 188 37.2
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 5.4e-12 75.1 65 47.7
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 5.4e-12 75.1 57 47.4
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 7.1e-12 74.7 57 45.6
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 7.1e-12 74.7 145 42.8
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 7.1e-12 74.7 58 44.8
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 9.3e-12 74.3 48 54.2
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 9.3e-12 74.3 52 51.9
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 9.3e-12 74.3 178 37.6
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 9.3e-12 74.3 52 51.9
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 9.3e-12 74.3 148 31.8
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 9.3e-12 74.3 48 56.2
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 1.2e-11 73.9 57 43.9
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 1.2e-11 73.9 57 45.6
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 1.2e-11 73.9 57 43.9
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 1.2e-11 73.9 57 43.9
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 1.2e-11 73.9 57 43.9
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 1.2e-11 73.9 57 45.6
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 1.2e-11 73.9 53 52.8
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 1.6e-11 73.6 141 42.6
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 1.6e-11 73.6 153 28.8
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 2.1e-11 73.2 48 52.1
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 2.1e-11 73.2 53 49.1
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 2.1e-11 73.2 149 43.6
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 2.7e-11 72.8 164 34.1
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 2.7e-11 72.8 55 45.5
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 2.7e-11 72.8 50 52.0
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 3.5e-11 72.4 48 56.2
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 3.5e-11 72.4 51 49.0
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 3.5e-11 72.4 172 40.7
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 3.5e-11 72.4 57 47.4
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 4.6e-11 72.0 53 45.3
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 4.6e-11 72.0 48 54.2
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 4.6e-11 72.0 49 51.0
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 4.6e-11 72.0 154 39.6
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 6.0e-11 71.6 128 42.2
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 6.0e-11 71.6 150 33.3
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 7.9e-11 71.2 53 45.3
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 7.9e-11 71.2 147 35.4
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 7.9e-11 71.2 52 46.2
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 1.0e-10 70.9 156 38.5
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 1.3e-10 70.5 146 28.8
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 1.7e-10 70.1 51 47.1
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 2.3e-10 69.7 149 36.9
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 2.3e-10 69.7 157 33.8
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.0e-10 69.3 48 52.1
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.0e-10 69.3 48 52.1
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.0e-10 69.3 48 52.1
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.0e-10 69.3 48 52.1
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 3.0e-10 69.3 52 46.2
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 3.9e-10 68.9 155 31.6
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 3.9e-10 68.9 49 49.0
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 3.9e-10 68.9 170 39.4
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 5.1e-10 68.6 151 29.1
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 5.1e-10 68.6 53 43.4
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 5.1e-10 68.6 172 36.0
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 8.7e-10 67.8 48 45.8
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 8.7e-10 67.8 52 46.2
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 8.7e-10 67.8 52 46.2
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 1.1e-09 67.4 42 54.8
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 1.1e-09 67.4 146 31.5
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 1.5e-09 67.0 48 45.8
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 1.5e-09 67.0 48 45.8
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 1.9e-09 66.6 48 43.8
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 2.5e-09 66.2 162 34.0
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.5e-09 66.2 48 43.8
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.5e-09 66.2 48 43.8
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.5e-09 66.2 48 45.8
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 3.3e-09 65.9 162 34.0
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 4.3e-09 65.5 48 43.8
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 4.3e-09 65.5 48 43.8
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 4.3e-09 65.5 48 45.8
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 5.6e-09 65.1 48 45.8
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 5.6e-09 65.1 49 51.0
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 5.6e-09 65.1 46 47.8
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 7.3e-09 64.7 49 44.9
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 7.3e-09 64.7 49 44.9
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 7.3e-09 64.7 49 42.9
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 9.6e-09 64.3 154 31.8
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 9.6e-09 64.3 51 45.1
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 9.6e-09 64.3 51 45.1
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 1.3e-08 63.9 49 44.9
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 1.6e-08 63.5 49 44.9
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 1.6e-08 63.5 46 47.8
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 1.6e-08 63.5 46 47.8
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 2.1e-08 63.2 157 39.5
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 2.8e-08 62.8 163 36.8
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 2.8e-08 62.8 63 38.1
HPP92_008197 Vanilla planifolia HOM05D024720 ORTHO05D006225 3.6e-08 62.4 113 42.5
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 6.2e-08 61.6 49 42.9
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 6.2e-08 61.6 46 45.7
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 8.1e-08 61.2 156 42.3
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 8.1e-08 61.2 49 40.8
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 1.1e-07 60.8 158 38.0
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 1.8e-07 60.1 162 37.7
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 2.4e-07 59.7 48 41.7
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 5.3e-07 58.5 57 38.6
Os09g0309600 Oryza sativa ssp. japonica HOM05D024720 ORTHO05D030308 2.0e-06 56.6 123 34.1
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 4.5e-06 55.5 142 40.8
vmacro14931 Vaccinium macrocarpon HOM05D001530 ORTHO05D003676 4.5e-06 55.5 108 36.1


User provided reference genes

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