Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 9.0e-79 297.0 163 100.0
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 6.8e-26 121.3 216 44.4
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 5.2e-18 95.1 82 61.0
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 6.8e-18 94.7 170 40.0
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 6.8e-18 94.7 112 50.9
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 8.9e-18 94.4 83 61.4
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 8.9e-18 94.4 112 52.7
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 1.2e-17 94.0 82 59.8
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 1.2e-17 94.0 82 59.8
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 1.2e-17 94.0 82 59.8
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 1.2e-17 94.0 112 51.8
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.2e-17 94.0 82 59.8
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 1.5e-17 93.6 82 58.5
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 1.5e-17 93.6 152 40.1
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 2.0e-17 93.2 82 59.8
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 2.0e-17 93.2 79 60.8
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 2.0e-17 93.2 106 53.8
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.6e-17 92.8 160 39.4
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 3.4e-17 92.4 86 58.1
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 3.4e-17 92.4 181 38.1
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 3.4e-17 92.4 80 65.0
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 5.8e-17 91.7 83 60.2
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 5.8e-17 91.7 181 38.1
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 5.8e-17 91.7 75 64.0
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.3e-16 90.5 184 40.2
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 1.3e-16 90.5 180 37.2
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 2.2e-16 89.7 76 60.5
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 2.2e-16 89.7 156 41.0
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 2.9e-16 89.4 77 61.0
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 3.7e-16 89.0 76 59.2
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 4.9e-16 88.6 76 65.8
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 6.4e-16 88.2 82 56.1
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 6.4e-16 88.2 159 42.1
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 6.4e-16 88.2 159 42.1
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 8.3e-16 87.8 189 35.4
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 8.3e-16 87.8 80 57.5
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 8.3e-16 87.8 126 46.0
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 1.1e-15 87.4 164 36.6
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 1.1e-15 87.4 186 36.6
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 1.1e-15 87.4 74 60.8
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 1.4e-15 87.0 159 40.3
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 1.4e-15 87.0 99 54.5
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 1.9e-15 86.7 181 38.1
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 1.9e-15 86.7 192 40.6
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.9e-15 86.7 159 41.5
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 2.4e-15 86.3 78 60.3
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 3.2e-15 85.9 82 54.9
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 3.2e-15 85.9 82 54.9
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 3.2e-15 85.9 82 54.9
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 3.2e-15 85.9 82 54.9
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 3.2e-15 85.9 177 40.7
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 4.1e-15 85.5 76 61.8
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.1e-15 85.5 154 40.9
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 4.1e-15 85.5 112 45.5
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 4.1e-15 85.5 190 35.8
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 4.1e-15 85.5 165 33.9
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 7.0e-15 84.7 157 42.0
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 7.0e-15 84.7 147 42.9
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 7.0e-15 84.7 103 48.5
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 9.2e-15 84.3 187 37.4
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 9.2e-15 84.3 167 38.3
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 9.2e-15 84.3 162 37.7
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.2e-14 84.0 154 40.9
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 2.0e-14 83.2 175 38.9
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 2.0e-14 83.2 178 35.4
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 2.0e-14 83.2 79 57.0
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 3.5e-14 82.4 80 57.5
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 3.5e-14 82.4 157 41.4
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 3.5e-14 82.4 78 57.7
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 3.5e-14 82.4 78 59.0
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 4.6e-14 82.0 163 33.7
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 4.6e-14 82.0 158 41.1
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 4.6e-14 82.0 85 54.1
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.6e-14 82.0 77 59.7
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.6e-14 82.0 77 59.7
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 4.6e-14 82.0 77 59.7
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 4.6e-14 82.0 161 36.6
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 4.6e-14 82.0 127 44.1
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 4.6e-14 82.0 166 36.1
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 6.0e-14 81.6 135 40.7
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 6.0e-14 81.6 184 30.4
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 6.0e-14 81.6 76 55.3
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 1.0e-13 80.9 148 35.1
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.0e-13 80.9 80 58.8
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.0e-13 80.9 77 59.7
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 1.3e-13 80.5 77 58.4
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 3.9e-13 79.0 190 32.6
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 3.9e-13 79.0 183 33.9
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 3.9e-13 79.0 173 34.7
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 8.6e-13 77.8 75 58.7
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 8.6e-13 77.8 149 40.9
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 8.6e-13 77.8 168 35.7
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 1.1e-12 77.4 160 35.6
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 1.1e-12 77.4 77 54.5
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 1.9e-12 76.6 199 33.7
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 3.3e-12 75.9 118 44.1
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 3.3e-12 75.9 109 49.5
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 3.3e-12 75.9 162 35.2
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 5.6e-12 75.1 191 31.4
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 5.6e-12 75.1 122 42.6
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 7.3e-12 74.7 179 36.9
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 7.3e-12 74.7 128 40.6
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 9.5e-12 74.3 160 38.1
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 9.5e-12 74.3 127 40.2
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 9.5e-12 74.3 115 41.7
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 9.5e-12 74.3 176 35.2
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 9.5e-12 74.3 198 38.4
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.2e-11 73.9 193 31.6
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 1.2e-11 73.9 117 41.0
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 3.6e-11 72.4 116 43.1
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 6.2e-11 71.6 75 53.3
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 6.2e-11 71.6 149 33.6
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 6.2e-11 71.6 120 42.5
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 1.4e-10 70.5 119 40.3
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 1.4e-10 70.5 165 32.7
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 1.8e-10 70.1 74 54.1
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 1.8e-10 70.1 74 54.1
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 1.8e-10 70.1 74 54.1
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 1.8e-10 70.1 74 54.1
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 1.8e-10 70.1 74 54.1
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 1.8e-10 70.1 83 51.8
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 2.3e-10 69.7 73 54.8
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 2.3e-10 69.7 70 55.7
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 2.3e-10 69.7 70 55.7
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 3.1e-10 69.3 69 55.1
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 4.0e-10 68.9 78 51.3
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 5.2e-10 68.6 121 39.7
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 6.8e-10 68.2 77 48.1
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 8.9e-10 67.8 123 39.8
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 1.2e-09 67.4 116 40.5
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 1.2e-09 67.4 119 43.7
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 1.5e-09 67.0 165 38.2
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 1.5e-09 67.0 165 37.0
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 2.0e-09 66.6 91 45.1
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 2.0e-09 66.6 123 40.7
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 3.4e-09 65.9 74 48.6
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 3.4e-09 65.9 74 48.6
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 3.4e-09 65.9 123 37.4
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 9.8e-09 64.3 176 32.4
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 9.8e-09 64.3 120 43.3
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.3e-08 63.9 183 34.4
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 1.3e-08 63.9 215 26.5
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 1.3e-08 63.9 186 29.0
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 1.7e-08 63.5 73 49.3
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 1.7e-08 63.5 73 49.3
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 1.7e-08 63.5 73 49.3
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.7e-08 63.5 75 49.3
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 3.7e-08 62.4 75 48.0
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 6.4e-08 61.6 177 31.6
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 8.3e-08 61.2 99 39.4
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 1.1e-07 60.8 122 36.9
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 7.1e-07 58.2 83 42.2
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 9.2e-07 57.8 121 38.8
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 1.2e-06 57.4 108 38.0
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.6e-06 57.0 72 41.7
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 2.7e-06 56.2 112 38.4
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 4.6e-06 55.5 59 49.2
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 4.6e-06 55.5 76 43.4
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 6.0e-06 55.1 210 26.2


User provided reference genes

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