Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 1.0e-97 360.1 189 100.0
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 4.1e-59 231.9 187 70.1
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 4.1e-59 231.9 187 69.5
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 5.2e-54 214.9 187 63.6
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 2.0e-53 213.0 186 64.5
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 3.4e-53 212.2 183 65.0
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 5.8e-53 211.5 186 63.4
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 5.8e-53 211.5 186 63.4
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 7.5e-53 211.1 185 62.7
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 1.7e-52 209.9 192 59.4
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 1.7e-52 209.9 210 61.0
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 2.2e-52 209.5 185 63.2
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 2.9e-52 209.1 187 62.0
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 2.9e-52 209.1 181 63.5
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 4.9e-52 208.4 187 62.0
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 4.9e-52 208.4 181 65.2
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 6.4e-52 208.0 186 62.4
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 8.3e-52 207.6 187 61.5
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 8.3e-52 207.6 181 64.6
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.1e-51 207.2 185 63.8
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 1.4e-51 206.8 193 58.5
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 2.4e-51 206.1 189 62.4
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 2.4e-51 206.1 178 63.5
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 2.4e-51 206.1 183 63.4
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 2.4e-51 206.1 212 59.0
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 3.2e-51 205.7 182 63.7
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 3.2e-51 205.7 181 60.8
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 4.1e-51 205.3 189 61.4
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 4.1e-51 205.3 192 62.5
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 9.2e-51 204.1 177 62.7
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 9.2e-51 204.1 177 63.3
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 1.2e-50 203.8 179 60.9
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 1.2e-50 203.8 181 60.2
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 2.1e-50 203.0 179 60.9
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 2.1e-50 203.0 175 65.1
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 2.7e-50 202.6 187 60.4
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 2.7e-50 202.6 187 60.4
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 3.5e-50 202.2 187 59.9
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 7.8e-50 201.1 187 59.9
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 1.0e-49 200.7 186 60.2
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.0e-49 200.7 174 62.1
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 1.0e-49 200.7 184 60.9
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 1.0e-49 200.7 176 60.2
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 1.7e-49 199.9 186 59.7
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 1.7e-49 199.9 186 59.7
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 1.7e-49 199.9 186 61.8
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 2.3e-49 199.5 187 59.4
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 2.3e-49 199.5 178 62.9
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 2.3e-49 199.5 184 60.9
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 2.3e-49 199.5 180 61.1
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 3.0e-49 199.1 187 60.4
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 3.0e-49 199.1 181 60.2
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 3.0e-49 199.1 181 60.2
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 3.0e-49 199.1 174 62.1
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 3.9e-49 198.7 181 63.0
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 3.9e-49 198.7 174 61.5
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 3.9e-49 198.7 185 60.0
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 5.1e-49 198.4 186 59.7
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 5.1e-49 198.4 186 59.7
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 1.1e-48 197.2 186 59.7
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 1.1e-48 197.2 185 59.5
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 1.1e-48 197.2 183 59.6
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 1.5e-48 196.8 180 57.8
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 1.5e-48 196.8 184 59.2
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 1.5e-48 196.8 173 63.0
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 1.9e-48 196.4 181 60.8
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.9e-48 196.4 181 59.7
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 2.5e-48 196.1 173 63.0
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 2.5e-48 196.1 120 80.8
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 3.3e-48 195.7 114 85.1
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 5.6e-48 194.9 123 82.1
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 5.6e-48 194.9 180 60.0
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 5.6e-48 194.9 182 60.4
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 7.3e-48 194.5 182 57.1
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 9.5e-48 194.1 121 79.3
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 9.5e-48 194.1 180 60.0
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 9.5e-48 194.1 184 60.9
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 1.2e-47 193.7 127 78.7
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.2e-47 193.7 184 60.9
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 1.2e-47 193.7 186 57.5
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 1.6e-47 193.4 180 59.4
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 2.1e-47 193.0 121 80.2
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.1e-47 193.0 180 58.9
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 2.1e-47 193.0 178 58.4
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 2.8e-47 192.6 179 58.7
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 2.8e-47 192.6 179 58.7
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 2.8e-47 192.6 179 58.7
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 4.7e-47 191.8 189 57.7
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 4.7e-47 191.8 114 84.2
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.7e-47 191.8 180 58.3
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 4.7e-47 191.8 186 57.5
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 6.2e-47 191.4 181 61.3
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.2e-47 191.4 180 58.3
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 8.1e-47 191.0 178 58.4
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 8.1e-47 191.0 114 83.3
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 8.1e-47 191.0 178 59.0
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 8.1e-47 191.0 180 59.4
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.1e-46 190.7 180 57.8
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 1.1e-46 190.7 160 68.1
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 2.4e-46 189.5 208 54.3
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 3.1e-46 189.1 188 55.9
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 4.0e-46 188.7 114 81.6
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.0e-46 188.7 180 57.8
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 5.2e-46 188.3 113 81.4
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 8.9e-46 187.6 177 58.2
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 7.6e-45 184.5 186 57.5
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 7.6e-45 184.5 224 51.3
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 9.9e-45 184.1 120 76.7
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 9.9e-45 184.1 120 76.7
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 2.2e-44 183.0 180 56.1
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 2.2e-44 183.0 187 54.5
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 2.2e-44 183.0 120 76.7
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 6.4e-44 181.4 187 54.5
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 6.4e-44 181.4 187 54.0
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 6.4e-44 181.4 120 75.8
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 8.4e-44 181.0 127 70.1
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 1.4e-43 180.3 185 53.5
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 1.9e-43 179.9 180 55.6
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 2.4e-43 179.5 120 75.0
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 3.2e-43 179.1 120 75.0
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 5.4e-43 178.3 120 74.2
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 7.1e-43 177.9 185 53.0
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 7.1e-43 177.9 120 74.2
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.1e-42 176.4 118 73.7
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.1e-42 176.4 118 73.7
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.1e-42 176.4 120 72.5
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 4.6e-42 175.3 191 53.4
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.0e-42 174.9 180 55.6
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 7.8e-42 174.5 180 55.6
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.9e-40 169.9 180 54.4
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 2.5e-40 169.5 186 55.4
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.6e-39 166.8 182 55.5
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 1.7e-36 156.8 181 47.5
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 9.3e-35 151.0 87 87.4
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 1.2e-34 150.6 181 43.1
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 1.3e-33 147.1 88 84.1
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 1.3e-33 147.1 132 56.1
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 8.7e-33 144.4 189 46.0
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 2.5e-32 142.9 120 57.5
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 2.5e-32 142.9 96 80.2
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 5.6e-32 141.7 100 73.0
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 1.9e-27 126.7 199 40.2
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 2.3e-25 119.8 70 82.9
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 1.1e-24 117.5 77 79.2
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 1.1e-24 117.5 77 79.2
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 5.6e-24 115.2 77 77.9
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 8.1e-23 111.3 172 41.9
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 6.9e-22 108.2 64 82.8
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 2.6e-21 106.3 124 42.7
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 3.4e-21 105.9 71 77.5
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 1.3e-20 104.0 115 42.6
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 2.5e-19 99.8 124 43.5
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 1.1e-16 90.9 116 38.8
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 3.3e-16 89.4 115 44.3
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 7.4e-16 88.2 58 69.0
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 9.6e-16 87.8 58 69.0
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 6.2e-15 85.1 69 68.1
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 4.0e-14 82.4 69 66.7
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 5.3e-14 82.0 55 76.4
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.0e-13 80.1 58 63.8
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.3e-12 77.4 57 71.9
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.3e-12 77.4 57 71.9
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 2.9e-12 76.3 128 31.2
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.0e-09 67.8 46 69.6
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 6.7e-09 65.1 47 72.3
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 5.7e-08 62.0 91 44.0


User provided reference genes

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