Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold255G45504 Striga asiatica HOM05D006320 ORTHO05D007069 3.5e-121 438.3 227 100.0
AUR62042330 Chenopodium quinoa HOM05D006320 ORTHO05D007069 1.3e-22 110.9 89 71.9
SalBow1G1899 Salvia bowleyana HOM05D006320 ORTHO05D007069 3.7e-22 109.4 60 100.0
LjContig00439g0017906 Lotus japonicus HOM05D006320 ORTHO05D007069 1.8e-21 107.1 60 98.3
LjContig00446g0026709 Lotus japonicus HOM05D006320 ORTHO05D007069 1.8e-21 107.1 60 98.3
Sed0021840 Sechium edule HOM05D006320 ORTHO05D007069 1.8e-21 107.1 60 98.3
Hma1.2p1_1191F.1_g265490 Hydrangea macrophylla HOM05D006320 ORTHO05D007069 4.1e-21 105.9 60 96.7
SHI34993 Sapria himalayana HOM05D006320 ORTHO05D007069 4.1e-21 105.9 83 78.3
SHI36586 Sapria himalayana HOM05D000743 ORTHO05D000580 4.1e-21 105.9 60 96.7
SHI40315 Sapria himalayana HOM05D006320 ORTHO05D007069 4.1e-21 105.9 60 96.7
Aqoxy12s033 Aquilegia oxysepala HOM05D006320 ORTHO05D007069 5.4e-21 105.5 60 95.0
SHI52535 Sapria himalayana HOM05D006320 ORTHO05D007069 7.0e-21 105.1 81 75.3
Ah.10g028420 Amaranthus hybridus HOM05D006320 ORTHO05D007069 1.2e-20 104.4 84 77.4
SHI36772 Sapria himalayana HOM05D000743 ORTHO05D000580 1.2e-20 104.4 60 96.7
SHI36783 Sapria himalayana HOM05D000743 ORTHO05D000580 1.2e-20 104.4 60 96.7
arahy.Tifrunner.gnm1.ann1.5U23EP Arachis hypogaea HOM05D006320 ORTHO05D007069 2.0e-20 103.6 60 95.0
arahy.Tifrunner.gnm1.ann1.XSHW5Z Arachis hypogaea HOM05D006320 ORTHO05D007069 2.0e-20 103.6 60 95.0
arahy.Tifrunner.gnm1.ann1.YTYD5C Arachis hypogaea HOM05D006320 ORTHO05D007069 2.0e-20 103.6 60 95.0
Gohir.D07G024400 Gossypium hirsutum HOM05D006320 ORTHO05D007069 2.0e-20 103.6 60 95.0
Lalb_Chr00c24g0406831 Lupinus albus HOM05D006320 ORTHO05D007069 2.0e-20 103.6 60 95.0
Lalb_Chr11g0070071 Lupinus albus HOM05D006320 ORTHO05D007069 2.0e-20 103.6 60 95.0
Phvul.005G088454 Phaseolus vulgaris HOM05D006320 ORTHO05D007069 2.0e-20 103.6 60 95.0
SHI36381 Sapria himalayana HOM05D001560 ORTHO05D003613 2.0e-20 103.6 59 94.9
SHI46272 Sapria himalayana HOM05D000743 ORTHO05D000580 2.0e-20 103.6 60 95.0
CANSAT16G0023 Cannabis sativa HOM05D006320 ORTHO05D007069 2.7e-20 103.2 60 93.3
Cfa022996 Carpinus fangiana HOM05D001750 ORTHO05D001825 3.5e-20 102.8 65 87.7
CARHR287930 Cardamine hirsuta HOM05D006320 ORTHO05D007069 4.5e-20 102.4 60 95.0
SHI39778 Sapria himalayana HOM05D006320 ORTHO05D007069 4.5e-20 102.4 83 77.1
AL5G20340 Arabidopsis lyrata HOM05D006320 ORTHO05D007069 5.9e-20 102.1 60 93.3
AT2G07671 Arabidopsis thaliana HOM05D006320 ORTHO05D007069 5.9e-20 102.1 60 93.3
ATMG01080 Arabidopsis thaliana HOM05D006320 ORTHO05D007069 5.9e-20 102.1 60 93.3
BolSC28t60384H Brassica oleracea HOM05D006320 ORTHO05D007069 5.9e-20 102.1 60 93.3
BolSC28t60392H Brassica oleracea HOM05D006320 ORTHO05D007069 5.9e-20 102.1 60 93.3
BolSC28t60418H Brassica oleracea HOM05D006320 ORTHO05D007069 5.9e-20 102.1 60 93.3
BraSC224t45817Z Brassica rapa HOM05D006320 ORTHO05D007069 5.9e-20 102.1 60 93.3
Thhalv10023008m.g Eutrema salsugineum HOM05D006320 ORTHO05D007069 5.9e-20 102.1 60 93.3
RhsimMtG0004200 Rhododendron simsii HOM05D006320 ORTHO05D007069 5.9e-20 102.1 60 93.3
RcHm_v2.0_MTg0498361 Rosa chinensis HOM05D006320 ORTHO05D007069 5.9e-20 102.1 60 93.3
SHI51203 Sapria himalayana HOM05D006320 ORTHO05D007069 5.9e-20 102.1 80 77.5
SHI15099 Sapria himalayana HOM05D006320 ORTHO05D007069 7.7e-20 101.7 57 98.2
SHI35481 Sapria himalayana HOM05D000890 ORTHO05D007069 7.7e-20 101.7 57 98.2
CsaV3_UNG209120 Cucumis sativus L. HOM05D006320 ORTHO05D007069 1.0e-19 101.3 60 93.3
PGR028G0009 Punica granatum HOM05D006320 ORTHO05D007069 1.0e-19 101.3 60 93.3
SHI47782 Sapria himalayana HOM05D006320 ORTHO05D007069 1.0e-19 101.3 71 81.7
SHI50287 Sapria himalayana HOM05D006320 ORTHO05D007069 1.0e-19 101.3 63 88.9
Hund27557 Selenicereus undatus HOM05D001750 ORTHO05D007069 1.0e-19 101.3 60 93.3
SHI36018 Sapria himalayana HOM05D000743 ORTHO05D000580 1.3e-19 100.9 60 93.3
C01p34910 Brassica napus HOM05D006320 ORTHO05D007069 1.7e-19 100.5 60 91.7
BolC1t03457H Brassica oleracea HOM05D006320 ORTHO05D007069 1.7e-19 100.5 60 91.7
SHI47632 Sapria himalayana HOM05D006320 ORTHO05D007069 1.7e-19 100.5 71 81.7
CDE02G4101 Ceratophyllum demersum HOM05D006320 ORTHO05D007069 2.3e-19 100.1 60 93.3
Psat1g120760 Pisum sativum HOM05D012609 ORTHO05D007069 2.3e-19 100.1 60 93.3
ECA041G0001 Erigeron canadensis HOM05D001750 ORTHO05D001825 2.9e-19 99.8 60 91.7
ECA234G4202 Erigeron canadensis HOM05D006320 ORTHO05D007069 2.9e-19 99.8 60 91.7
HanXRQMTg0579361 Helianthus annuus HOM05D001750 ORTHO05D001825 2.9e-19 99.8 60 91.7
Lsat_1_v5_gn_8_111781 Lactuca sativa HOM05D006320 ORTHO05D007069 2.9e-19 99.8 60 91.7
Phvul.011G124000 Phaseolus vulgaris HOM05D006320 ORTHO05D007069 2.9e-19 99.8 60 91.7
SHI37011 Sapria himalayana HOM05D000743 ORTHO05D000580 2.9e-19 99.8 60 91.7
SHI34625 Sapria himalayana HOM05D000743 ORTHO05D000580 3.8e-19 99.4 60 91.7
SHI37138 Sapria himalayana HOM05D006320 ORTHO05D007069 3.8e-19 99.4 84 70.2
SHI38101 Sapria himalayana HOM05D000743 ORTHO05D000580 3.8e-19 99.4 60 90.0
SHI39753 Sapria himalayana HOM05D006320 ORTHO05D007069 3.8e-19 99.4 57 96.5
SHI39988 Sapria himalayana HOM05D006320 ORTHO05D007069 6.6e-19 98.6 57 94.7
SHI54307 Sapria himalayana HOM05D006320 ORTHO05D007069 6.6e-19 98.6 57 94.7
C01p34830 Brassica napus HOM05D006320 ORTHO05D007069 8.6e-19 98.2 60 90.0
SHI49633 Sapria himalayana HOM05D006320 ORTHO05D007069 8.6e-19 98.2 84 69.0
Dinv06672 Davidia involucrata HOM05D001750 ORTHO05D001825 1.1e-18 97.8 60 91.7
Dinv06715 Davidia involucrata HOM05D006320 ORTHO05D007069 1.1e-18 97.8 60 91.7
Dinv18904 Davidia involucrata HOM05D001750 ORTHO05D001825 1.1e-18 97.8 60 91.7
SHI36936 Sapria himalayana HOM05D000743 ORTHO05D000580 1.1e-18 97.8 60 90.0
SHI38465 Sapria himalayana HOM05D000743 ORTHO05D000580 1.1e-18 97.8 56 94.6
Lalb_Chr10g0093911 Lupinus albus HOM05D006320 ORTHO05D007069 1.5e-18 97.4 60 90.0
SHI35484 Sapria himalayana HOM05D006320 ORTHO05D007069 1.9e-18 97.1 57 94.7
SHI38846 Sapria himalayana HOM05D006320 ORTHO05D007069 1.9e-18 97.1 57 91.2
Sc08g0004920 Simmondsia chinensis HOM05D006320 ORTHO05D007069 1.9e-18 97.1 60 88.3
SHI35237 Sapria himalayana HOM05D006320 ORTHO05D007069 2.5e-18 96.7 57 93.0
SHI46360 Sapria himalayana HOM05D006320 ORTHO05D007069 2.5e-18 96.7 57 93.0
SHI48649 Sapria himalayana HOM05D006320 ORTHO05D007069 2.5e-18 96.7 57 93.0
Nitab4.5_0002326g0030 Nicotiana tabacum HOM05D006320 ORTHO05D007069 3.3e-18 96.3 60 86.7
SHI34605 Sapria himalayana HOM05D001560 ORTHO05D003613 3.3e-18 96.3 59 91.5
SHI35327 Sapria himalayana HOM05D001560 ORTHO05D003613 4.3e-18 95.9 57 91.2
SHI36370 Sapria himalayana HOM05D006320 ORTHO05D007069 4.3e-18 95.9 74 77.0
SHI34615 Sapria himalayana HOM05D000743 ORTHO05D000580 5.6e-18 95.5 59 89.8
Aa31sc483G20 Aethionema arabicum HOM05D006320 ORTHO05D007069 7.2e-18 95.1 60 91.7
Nitab4.5_0000172g0580 Nicotiana tabacum HOM05D006320 ORTHO05D007069 7.2e-18 95.1 60 86.7
SHI53429 Sapria himalayana HOM05D006320 ORTHO05D007069 7.2e-18 95.1 57 93.0
SalBow6G3944 Salvia bowleyana HOM05D006320 ORTHO05D007069 9.5e-18 94.7 60 88.3
SHI37168 Sapria himalayana HOM05D006320 ORTHO05D007069 9.5e-18 94.7 84 67.9
GSVIVG01029662001 Vitis vinifera HOM05D006320 ORTHO05D007069 9.5e-18 94.7 60 86.7
SHI53047 Sapria himalayana HOM05D006320 ORTHO05D007069 1.2e-17 94.4 57 91.2
CANSAT21G1924 Cannabis sativa HOM05D006320 ORTHO05D007069 1.6e-17 94.0 57 91.2
ECA039G0010 Erigeron canadensis HOM05D001750 ORTHO05D001825 1.6e-17 94.0 57 91.2
SHI27343 Sapria himalayana HOM05D006320 ORTHO05D007069 2.1e-17 93.6 58 89.7
SHI37852 Sapria himalayana HOM05D006320 ORTHO05D007069 2.1e-17 93.6 60 88.3
SalBow8G4348 Salvia bowleyana HOM05D006320 ORTHO05D007069 8.0e-17 91.7 60 88.3
Sopen12g013690 Solanum pennellii HOM05D006320 ORTHO05D007069 1.4e-16 90.9 60 85.0
SHI41242 Sapria himalayana HOM05D006320 ORTHO05D007069 4.0e-16 89.4 56 89.3
SHI50161 Sapria himalayana HOM05D006320 ORTHO05D007069 5.2e-16 89.0 56 89.3
CAN.G761.5 Capsicum annuum HOM05D012609 ORTHO05D007069 6.8e-16 88.6 58 84.5
SHI42051 Sapria himalayana HOM05D006320 ORTHO05D007069 6.8e-16 88.6 57 87.7
SHI49662 Sapria himalayana HOM05D006320 ORTHO05D007069 6.8e-16 88.6 57 89.5
PGSC0003DMG400002202 Solanum tuberosum HOM05D006320 ORTHO05D007069 8.9e-16 88.2 53 90.6
Nitab4.5_0002418g0080 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.2e-15 87.8 59 79.7
Nitab4.5_0001152g0710 Nicotiana tabacum HOM05D006320 ORTHO05D007069 2.6e-15 86.7 60 78.3
SHI39076 Sapria himalayana HOM05D006320 ORTHO05D007069 5.7e-15 85.5 57 84.2
Sc08g0004610 Simmondsia chinensis HOM05D006320 ORTHO05D007069 7.5e-15 85.1 59 83.1
CAN.G547.1 Capsicum annuum HOM05D006320 ORTHO05D007069 9.8e-15 84.7 51 90.2
SHI39478 Sapria himalayana HOM05D006320 ORTHO05D007069 1.3e-14 84.3 53 86.8
SEGI_10818 Sequoiadendron giganteum HOM05D006320 ORTHO05D007069 6.4e-14 82.0 60 80.0
Manes.04G128250 Manihot esculenta HOM05D006320 ORTHO05D007069 1.1e-13 81.3 46 97.8
SHI36574 Sapria himalayana HOM05D006320 ORTHO05D007069 1.4e-13 80.9 47 93.6
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 4.1e-13 79.3 47 87.2
SHI51623 Sapria himalayana HOM05D006320 ORTHO05D007069 1.2e-12 77.8 48 89.6
Lsat_1_v5_gn_7_80061 Lactuca sativa HOM05D006320 ORTHO05D007069 2.0e-12 77.0 60 75.0
SHI40933 Sapria himalayana HOM05D000743 ORTHO05D000580 2.0e-12 77.0 47 89.4
SHI41650 Sapria himalayana HOM05D000743 ORTHO05D000580 2.0e-12 77.0 46 91.3
Cre17.g731950 Chlamydomonas reinhardtii HOM05D006320 ORTHO05D007069 5.9e-12 75.5 60 63.3
Cre17.g732000 Chlamydomonas reinhardtii HOM05D006320 ORTHO05D007069 5.9e-12 75.5 60 63.3
Peaxi162Scf00828g00512 Petunia axillaris HOM05D006320 ORTHO05D007069 1.0e-11 74.7 49 81.6
Peaxi162Scf03787g00001 Petunia axillaris HOM05D006320 ORTHO05D007069 1.0e-11 74.7 49 81.6
SHI25012 Sapria himalayana HOM05D006320 ORTHO05D007069 1.7e-11 73.9 59 72.9
Gorai.001G163400 Gossypium raimondii HOM05D001750 ORTHO05D001825 3.9e-11 72.8 49 83.7
SHI43389 Sapria himalayana HOM05D000743 ORTHO05D000580 3.9e-11 72.8 64 68.8
CiPaw.06G021700 Carya illinoinensis HOM05D006320 ORTHO05D007069 8.6e-11 71.6 42 88.1
ATMG00040 Arabidopsis thaliana HOM05D010793 ORTHO05D011945 1.5e-10 70.9 42 92.9
CARHR282610 Cardamine hirsuta HOM05D010793 ORTHO05D011945 1.5e-10 70.9 42 92.9
Os01g0899275 Oryza sativa ssp. japonica HOM05D006320 ORTHO05D007069 1.5e-10 70.9 40 95.0
TAR022G0003 Trochodendron aralioides HOM05D006320 ORTHO05D007069 1.5e-10 70.9 58 69.0
Haze_26208 Corylus avellana HOM05D006320 ORTHO05D007069 1.9e-10 70.5 55 67.3
Haze_26209 Corylus avellana HOM05D006320 ORTHO05D007069 1.9e-10 70.5 55 67.3
Nitab4.5_0000172g1200 Nicotiana tabacum HOM05D007924 ORTHO05D007069 4.3e-10 69.3 56 69.6
TAR424G0002 Trochodendron aralioides HOM05D006320 ORTHO05D007069 9.5e-10 68.2 58 63.8
Os01g0899350 Oryza sativa ssp. japonica HOM05D006320 ORTHO05D007069 1.6e-09 67.4 40 90.0
C04p27420 Brassica napus HOM05D006320 ORTHO05D007069 3.6e-09 66.2 47 80.9
Lsat_1_v5_gn_3_89840 Lactuca sativa HOM05D006320 ORTHO05D007069 3.6e-09 66.2 57 68.4
Mapoly3785s0001 Marchantia polymorpha HOM05D006320 ORTHO05D007069 4.7e-09 65.9 58 65.5
Nitab4.5_0005246g0040 Nicotiana tabacum HOM05D007924 ORTHO05D007069 4.7e-09 65.9 56 69.6
Nitab4.5_0000172g1000 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.4e-08 64.3 57 66.7
CiPaw.04G019500 Carya illinoinensis HOM05D006320 ORTHO05D007069 1.8e-08 63.9 60 60.0
SHI36078 Sapria himalayana HOM05D000743 ORTHO05D007069 5.2e-08 62.4 35 91.4
HanXRQChr08g0236091 Helianthus annuus HOM05D006320 ORTHO05D007069 1.2e-07 61.2 60 63.3
HanXRQChr16g0504511 Helianthus annuus HOM05D006320 ORTHO05D007069 1.2e-07 61.2 60 63.3
HanXRQMTg0579331 Helianthus annuus HOM05D006320 ORTHO05D007069 1.2e-07 61.2 60 63.3
SHI15041 Sapria himalayana HOM05D006320 ORTHO05D007069 2.0e-07 60.5 44 79.5
SHI39121 Sapria himalayana HOM05D000743 ORTHO05D000580 2.6e-07 60.1 35 85.7
Nitab4.5_0002404g0040 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.3e-06 57.8 100 47.0
ClCG08G001280 Citrullus lanatus HOM05D006320 ORTHO05D007069 2.2e-06 57.0 38 84.2
Solyc10g049590.1 Solanum lycopersicum HOM05D000216 ORTHO05D007069 2.2e-06 57.0 41 78.0
Nitab4.5_0001152g0490 Nicotiana tabacum HOM05D006320 ORTHO05D007069 2.9e-06 56.6 49 69.4
SHI35291 Sapria himalayana HOM05D007924 ORTHO05D007069 3.7e-06 56.2 34 91.2
SHI50382 Sapria himalayana HOM05D006320 ORTHO05D007069 6.4e-06 55.5 34 91.2
Haze_27774 Corylus avellana HOM05D006320 ORTHO05D007069 8.3e-06 55.1 57 49.1
Haze_27775 Corylus avellana HOM05D006320 ORTHO05D007069 8.3e-06 55.1 57 49.1


User provided reference genes

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