Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold255G45431 Striga asiatica HOM05D021982 ORTHO05D012910 1.2e-168 596.3 280 100.0
Atru.chr7.713 Acer truncatum HOM05D000003 ORTHO05D000004 2.6e-17 93.6 204 29.4
Atru.chr1.1905 Acer truncatum HOM05D000003 ORTHO05D000022 4.4e-17 92.8 204 29.4
Atru.chr5.2238 Acer truncatum HOM05D000003 ORTHO05D000004 5.8e-17 92.4 204 28.4
Atru.chr11.757 Acer truncatum HOM05D000003 ORTHO05D000004 7.6e-17 92.0 205 29.3
FvH4_3g27901 Fragaria vesca HOM05D000003 ORTHO05D000022 1.1e-15 88.2 205 28.3
CSS0038037 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.4e-15 87.0 199 27.1
COL.COLO4_36608 Corchorus olitorius HOM05D000003 ORTHO05D012910 2.4e-15 87.0 67 49.3
RcHm_v2.0_Chr5g0018821 Rosa chinensis HOM05D000003 ORTHO05D000022 2.4e-15 87.0 190 26.3
Atru.chr13.1101 Acer truncatum HOM05D000003 ORTHO05D000022 5.4e-15 85.9 208 27.9
Atru.chr1.1302 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-14 84.7 204 27.0
Atru.chr6.1397 Acer truncatum HOM05D000003 ORTHO05D000022 2.7e-14 83.6 223 24.7
Prupe.6G201000 Prunus persica HOM05D000003 ORTHO05D000022 3.5e-14 83.2 203 27.6
Prupe.4G161900 Prunus persica HOM05D000003 ORTHO05D000022 4.6e-14 82.8 203 28.6
Atru.chr10.857 Acer truncatum HOM05D000003 ORTHO05D000004 6.0e-14 82.4 201 27.4
Prupe.6G118100 Prunus persica HOM05D000003 ORTHO05D000022 6.0e-14 82.4 203 27.6
Atru.chr11.1308 Acer truncatum HOM05D000003 ORTHO05D000022 7.8e-14 82.0 207 28.0
CSS0009370 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 7.8e-14 82.0 199 26.1
Atru.chr10.81 Acer truncatum HOM05D000003 ORTHO05D000004 1.0e-13 81.6 233 26.2
Atru.chr2.2395 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-13 81.3 179 28.5
Atru.chr6.1028 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-13 81.3 208 24.5
Atru.chr1.776 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-13 80.9 207 25.1
Atru.chr2.2708 Acer truncatum HOM05D000003 ORTHO05D000022 1.7e-13 80.9 210 26.2
Atru.chr6.1145 Acer truncatum HOM05D000003 ORTHO05D012910 1.7e-13 80.9 125 33.6
Atru.chr7.668 Acer truncatum HOM05D000003 ORTHO05D000004 2.3e-13 80.5 204 26.5
Sabra01G0106600 Salix brachista HOM05D000003 ORTHO05D000022 3.0e-13 80.1 189 27.0
SGA_v2.0_scaffold232G43526 Striga asiatica HOM05D015157 ORTHO05D011148 3.0e-13 80.1 193 26.4
Atru.chr6.1170 Acer truncatum HOM05D000003 ORTHO05D000022 8.7e-13 78.6 205 24.4
Atru.chr4.29 Acer truncatum HOM05D000003 ORTHO05D000022 1.9e-12 77.4 206 26.2
Atru.chr6.2848 Acer truncatum HOM05D000003 ORTHO05D000022 2.5e-12 77.0 186 29.6
Prupe.6G123500 Prunus persica HOM05D000003 ORTHO05D000022 2.5e-12 77.0 186 28.0
Atru.chr2.1419 Acer truncatum HOM05D000003 ORTHO05D000022 3.3e-12 76.6 215 24.7
Atru.chr3.3019 Acer truncatum HOM05D000003 ORTHO05D000022 3.3e-12 76.6 208 24.5
Manes.06G020101 Manihot esculenta HOM05D000003 ORTHO05D000004 3.3e-12 76.6 171 31.0
Atru.chr10.629 Acer truncatum HOM05D000003 ORTHO05D000004 5.6e-12 75.9 245 25.3
RcHm_v2.0_Chr4g0406871 Rosa chinensis HOM05D000003 ORTHO05D000004 5.6e-12 75.9 188 25.0
Lj2g0018095 Lotus japonicus HOM05D000003 ORTHO05D034584 1.3e-11 74.7 192 25.5
THA.LOC104799794 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 1.3e-11 74.7 213 28.2
LjContig00357g0004525 Lotus japonicus HOM05D000003 ORTHO05D000022 2.1e-11 73.9 211 24.6
CSS0041590 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.8e-11 73.6 166 26.5
Atru.chr1.1336 Acer truncatum HOM05D000003 ORTHO05D000022 3.6e-11 73.2 218 22.0
Atru.chr1.2620 Acer truncatum HOM05D000003 ORTHO05D000004 3.6e-11 73.2 158 28.5
CSS0016144 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.6e-11 73.2 101 39.6
CSS0047834 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.6e-11 73.2 101 39.6
RcHm_v2.0_Chr1g0351011 Rosa chinensis HOM05D000003 ORTHO05D000004 3.6e-11 73.2 228 23.7
Atru.chr3.2067 Acer truncatum HOM05D000003 ORTHO05D000022 4.8e-11 72.8 229 27.5
PSO170G2564 Papaver somniferum HOM05D000003 ORTHO05D000004 4.8e-11 72.8 195 24.1
Aqoxy4G01607 Aquilegia oxysepala HOM05D013665 ORTHO05D011148 6.2e-11 72.4 155 30.3
CSS0048939 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 6.2e-11 72.4 156 26.9
Atru.chr2.971 Acer truncatum HOM05D000003 ORTHO05D000022 8.1e-11 72.0 108 34.3
Atru.chr8.1058 Acer truncatum HOM05D000003 ORTHO05D000004 8.1e-11 72.0 106 31.1
PSO170G2698 Papaver somniferum HOM05D000003 ORTHO05D001026 8.1e-11 72.0 194 25.8
QL06p036576 Quercus lobata HOM05D000003 ORTHO05D000004 1.8e-10 70.9 200 24.0
Atru.chr2.669 Acer truncatum HOM05D000003 ORTHO05D000004 4.0e-10 69.7 165 27.3
COL.COLO4_20501 Corchorus olitorius HOM05D000003 ORTHO05D000004 4.0e-10 69.7 206 25.2
FvH4_3g33091 Fragaria vesca HOM05D000003 ORTHO05D000022 5.3e-10 69.3 135 30.4
Atru.chr2.1761 Acer truncatum HOM05D000003 ORTHO05D000004 6.9e-10 68.9 129 31.0
FvH4_1g19471 Fragaria vesca HOM05D000003 ORTHO05D000004 6.9e-10 68.9 171 27.5
QL02p092030 Quercus lobata HOM05D000003 ORTHO05D000022 6.9e-10 68.9 189 24.9
Atru.chr7.622 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-09 68.2 209 24.9
PSO339G3052 Papaver somniferum HOM05D000003 ORTHO05D000004 1.2e-09 68.2 215 26.5
FvH4_6g46881 Fragaria vesca HOM05D000003 ORTHO05D000022 1.5e-09 67.8 111 29.7
COL.COLO4_07368 Corchorus olitorius HOM05D000003 ORTHO05D000022 2.0e-09 67.4 184 25.5
Atru.chr4.1146 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-09 67.0 156 30.1
Atru.chr4.661 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-09 67.0 141 30.5
Lj1g0008461 Lotus japonicus HOM05D010643 ORTHO05D011148 2.6e-09 67.0 114 33.3
Lj5g0000021 Lotus japonicus HOM05D010643 ORTHO05D011148 2.6e-09 67.0 114 33.3
Lj2g0002183 Lotus japonicus HOM05D010643 ORTHO05D012910 4.4e-09 66.2 124 30.6
SGA_v2.0_scaffold245G44469 Striga asiatica HOM05D000003 ORTHO05D000022 4.4e-09 66.2 193 26.4
Atru.chr3.2393 Acer truncatum HOM05D000003 ORTHO05D000022 5.8e-09 65.9 161 27.3
Atru.chr5.2276 Acer truncatum HOM05D000003 ORTHO05D000004 5.8e-09 65.9 110 29.1
CSS0032736 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 5.8e-09 65.9 166 24.7
CSS0039165 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 5.8e-09 65.9 96 38.5
COL.COLO4_03949 Corchorus olitorius HOM05D000155 ORTHO05D000022 7.6e-09 65.5 122 35.2
COL.COLO4_03980 Corchorus olitorius HOM05D000155 ORTHO05D000022 7.6e-09 65.5 91 36.3
CSS0029354 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 9.9e-09 65.1 90 40.0
PSO223G0068 Papaver somniferum HOM05D001060 ORTHO05D000905 9.9e-09 65.1 202 25.2
Atru.chr13.2390 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-08 64.7 113 30.1
Lj6g0022193 Lotus japonicus HOM05D010643 ORTHO05D013332 1.3e-08 64.7 116 32.8
EL10Ac4g08169 Beta vulgaris HOM05D000003 ORTHO05D000004 1.7e-08 64.3 104 27.9
COL.COLO4_37225 Corchorus olitorius HOM05D000003 ORTHO05D000126 1.7e-08 64.3 229 24.0
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.7e-08 64.3 164 29.9
Aqoxy3G00664 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.2e-08 63.9 138 28.3
Aqoxy5G02603 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.2e-08 63.9 131 28.2
Atru.chr1.1484 Acer truncatum HOM05D000003 ORTHO05D000022 2.9e-08 63.5 167 28.1
COL.COLO4_10453 Corchorus olitorius HOM05D000003 ORTHO05D000022 2.9e-08 63.5 121 31.4
COL.COLO4_30893 Corchorus olitorius HOM05D000327 ORTHO05D000218 2.9e-08 63.5 54 48.1
PSO339G0577 Papaver somniferum HOM05D000003 ORTHO05D000004 2.9e-08 63.5 229 23.6
Atru.chr4.136 Acer truncatum HOM05D000003 ORTHO05D000022 3.8e-08 63.2 108 29.6
Atru.chr7.949 Acer truncatum HOM05D000003 ORTHO05D000022 3.8e-08 63.2 137 25.5
PSO339G5512 Papaver somniferum HOM05D000003 ORTHO05D000004 3.8e-08 63.2 200 22.5
COL.COLO4_08513 Corchorus olitorius HOM05D000003 ORTHO05D000004 4.9e-08 62.8 119 29.4
Lj7P445T11 Lonicera japonica HOM05D025174 ORTHO05D012910 4.9e-08 62.8 78 37.2
PSO541G0757 Papaver somniferum HOM05D000003 ORTHO05D000004 4.9e-08 62.8 215 25.6
RcHm_v2.0_Chr6g0249781 Rosa chinensis HOM05D000003 ORTHO05D000004 4.9e-08 62.8 214 26.2
PGSC0003DMG400046872 Solanum tuberosum HOM05D000003 ORTHO05D000022 4.9e-08 62.8 208 23.6
CSS0007439 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 6.4e-08 62.4 111 31.5
QL01p007248 Quercus lobata HOM05D000003 ORTHO05D000022 8.4e-08 62.0 198 24.7
QL04p070512 Quercus lobata HOM05D008417 ORTHO05D010741 8.4e-08 62.0 199 25.6
TPR.G18100 Trifolium pratense HOM05D000003 ORTHO05D000004 8.4e-08 62.0 110 30.9
CSS0014297 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.1e-07 61.6 130 31.5
Lj4g0009536 Lotus japonicus HOM05D000003 ORTHO05D000004 1.1e-07 61.6 168 29.8
MBI16_g10452_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D003186 1.1e-07 61.6 162 27.8
RcHm_v2.0_Chr2g0144631 Rosa chinensis HOM05D000003 ORTHO05D000022 1.1e-07 61.6 162 27.8
TWI38G0333 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.1e-07 61.6 188 23.4
Atru.chr11.1461 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-07 61.2 208 21.2
QL05p015875 Quercus lobata HOM05D000003 ORTHO05D000004 1.4e-07 61.2 217 23.5
QL08p061842 Quercus lobata HOM05D000003 ORTHO05D000004 1.4e-07 61.2 208 21.6
RcHm_v2.0_Chr5g0053531 Rosa chinensis HOM05D000003 ORTHO05D000004 1.4e-07 61.2 188 24.5
Atru.chr1.1866 Acer truncatum HOM05D000003 ORTHO05D000004 1.9e-07 60.8 129 27.1
COL.COLO4_08472 Corchorus olitorius HOM05D000003 ORTHO05D000022 1.9e-07 60.8 94 30.9
Atru.chr12.1755 Acer truncatum HOM05D000003 ORTHO05D000022 2.4e-07 60.5 206 23.3
COL.COLO4_01156 Corchorus olitorius HOM05D000003 ORTHO05D000004 2.4e-07 60.5 192 22.9
PSO210G7201 Papaver somniferum HOM05D000003 ORTHO05D000004 2.4e-07 60.5 158 27.2
PSO675G5869 Papaver somniferum HOM05D000003 ORTHO05D000004 2.4e-07 60.5 164 25.6
PSO699G0001 Papaver somniferum HOM05D000003 ORTHO05D000004 2.4e-07 60.5 198 24.7
CSS0031820 Camellia sinensis var. sinensis HOM05D000698 ORTHO05D000004 3.2e-07 60.1 220 27.7
MBI18_g01966_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 3.2e-07 60.1 163 28.8
PSO063G2188 Papaver somniferum HOM05D000003 ORTHO05D000004 3.2e-07 60.1 241 24.5
Atru.chr7.120 Acer truncatum HOM05D000003 ORTHO05D000004 4.2e-07 59.7 141 27.7
Lju682P1T12 Lonicera japonica HOM05D025174 ORTHO05D012910 4.2e-07 59.7 107 29.9
PSO017G6289 Papaver somniferum HOM05D000003 ORTHO05D000004 4.2e-07 59.7 224 22.8
vmacro01820 Vaccinium macrocarpon HOM05D001647 ORTHO05D001191 5.4e-07 59.3 154 26.6
CSS0044635 Camellia sinensis var. sinensis HOM05D025174 ORTHO05D012910 7.1e-07 58.9 96 31.2
PSO832G0613 Papaver somniferum HOM05D000003 ORTHO05D000004 7.1e-07 58.9 219 23.7
QL04p041207 Quercus lobata HOM05D000003 ORTHO05D000004 7.1e-07 58.9 201 22.4
QL11p016914 Quercus lobata HOM05D008417 ORTHO05D010741 9.3e-07 58.5 208 22.1
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 1.2e-06 58.2 106 31.1
PSO063G7457 Papaver somniferum HOM05D000003 ORTHO05D000004 1.2e-06 58.2 213 23.9
PSO210G5003 Papaver somniferum HOM05D000003 ORTHO05D000004 1.2e-06 58.2 159 23.9
RcHm_v2.0_Chr6g0291741 Rosa chinensis HOM05D000003 ORTHO05D000004 1.2e-06 58.2 130 29.2
Atru.chr12.1990 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-06 57.4 65 38.5
COL.COLO4_21884 Corchorus olitorius HOM05D000003 ORTHO05D000004 2.1e-06 57.4 104 31.7
Medtr8g466070 Medicago truncatula HOM05D000655 ORTHO05D035954 2.1e-06 57.4 111 29.7
PSO144G0123 Papaver somniferum HOM05D000003 ORTHO05D000004 2.1e-06 57.4 153 26.1
PSO782G1558 Papaver somniferum HOM05D000003 ORTHO05D000004 2.1e-06 57.4 226 26.5
QL11p033686 Quercus lobata HOM05D005496 ORTHO05D006677 2.1e-06 57.4 116 31.0
SHI45994 Sapria himalayana HOM05D000003 ORTHO05D000004 2.1e-06 57.4 200 24.0
Atru.chr2.451 Acer truncatum HOM05D000003 ORTHO05D000004 2.7e-06 57.0 67 38.8
Aqoxy3G01132 Aquilegia oxysepala HOM05D013665 ORTHO05D017373 2.7e-06 57.0 122 31.1
CSS0029089 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.7e-06 57.0 167 27.5
CSS0029848 Camellia sinensis var. sinensis HOM05D025174 ORTHO05D012910 2.7e-06 57.0 74 36.5
Glyma.06G010150 Glycine max HOM05D000003 ORTHO05D000004 2.7e-06 57.0 114 28.1
Manes.13G092620 Manihot esculenta HOM05D000003 ORTHO05D000004 2.7e-06 57.0 107 30.8
Sopen06g007150 Solanum pennellii HOM05D000003 ORTHO05D000004 2.7e-06 57.0 204 23.0
TPR.G36225 Trifolium pratense HOM05D013665 ORTHO05D011148 2.7e-06 57.0 123 30.1
RcHm_v2.0_Chr1g0384551 Rosa chinensis HOM05D000003 ORTHO05D000004 3.5e-06 56.6 110 27.3
TPR.G23771 Trifolium pratense HOM05D006840 ORTHO05D008588 3.5e-06 56.6 113 33.6
EL10Ac3g06853 Beta vulgaris HOM05D014031 ORTHO05D000004 4.6e-06 56.2 203 22.7
PSO170G3376 Papaver somniferum HOM05D000003 ORTHO05D000004 4.6e-06 56.2 153 24.8
Atru.chr12.2484 Acer truncatum HOM05D000003 ORTHO05D000022 6.0e-06 55.8 157 24.2
FvH4_5g08844 Fragaria vesca HOM05D000003 ORTHO05D000004 6.0e-06 55.8 176 24.4
PSO063G6230 Papaver somniferum HOM05D000003 ORTHO05D001026 6.0e-06 55.8 156 25.0
PSO509G0029 Papaver somniferum HOM05D000003 ORTHO05D000004 6.0e-06 55.8 223 22.9
CANSAT21G1723 Cannabis sativa HOM05D000003 ORTHO05D000004 7.9e-06 55.5 229 24.5
FvH4_1g24182 Fragaria vesca HOM05D000003 ORTHO05D000004 7.9e-06 55.5 78 35.9
Lj4P763T2 Lonicera japonica HOM05D039584 ORTHO05D012910 7.9e-06 55.5 66 39.4
MBI01_g39982_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 7.9e-06 55.5 162 25.9
PSO782G4857 Papaver somniferum HOM05D000003 ORTHO05D001026 7.9e-06 55.5 161 21.1


User provided reference genes

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