Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold255G45359 Striga asiatica HOM05D009629 ORTHO05D012066 4.0e-72 274.6 135 100.0
Gorai.001G164600 Gossypium raimondii HOM05D006493 ORTHO05D009864 3.2e-29 132.1 203 44.3
Nitab4.5_0000172g0110 Nicotiana tabacum HOM05D009629 ORTHO05D012066 1.2e-23 113.6 246 38.6
HanXRQMTg0579061 Helianthus annuus HOM05D009629 ORTHO05D012066 1.7e-22 109.8 54 98.1
Ah.10g028490 Amaranthus hybridus HOM05D006493 ORTHO05D009864 4.9e-22 108.2 157 50.3
LjContig00439g0014425 Lotus japonicus HOM05D009629 ORTHO05D012066 1.1e-21 107.1 55 94.5
LjContig00439g0026016 Lotus japonicus HOM05D009629 ORTHO05D012066 1.1e-21 107.1 55 94.5
TPR.G40153 Trifolium pratense HOM05D009629 ORTHO05D012066 1.1e-21 107.1 55 94.5
arahy.Tifrunner.gnm1.ann1.VT0F5H Arachis hypogaea HOM05D009629 ORTHO05D012066 1.4e-21 106.7 55 92.7
Lalb_Chr00c29g0407961 Lupinus albus HOM05D009629 ORTHO05D012066 1.4e-21 106.7 54 96.3
Lalb_Chr10g0094551 Lupinus albus HOM05D009629 ORTHO05D012066 1.4e-21 106.7 54 96.3
Lalb_Chr10g0094581 Lupinus albus HOM05D009629 ORTHO05D012066 1.4e-21 106.7 54 96.3
Nitab4.5_0000172g1540 Nicotiana tabacum HOM05D006493 ORTHO05D009864 1.9e-21 106.3 118 57.6
PGR069G0009 Punica granatum HOM05D006493 ORTHO05D009864 1.6e-20 103.2 55 92.7
arahy.Tifrunner.gnm1.ann1.5430DM Arachis hypogaea HOM05D009629 ORTHO05D012066 3.5e-20 102.1 52 96.2
Potri.007G062482 Populus trichocarpa HOM05D009629 ORTHO05D012066 7.9e-20 100.9 54 92.6
Nitab4.5_0000085g0140 Nicotiana tabacum HOM05D009629 ORTHO05D012066 1.3e-19 100.1 295 32.2
Lalb_Chr25g0283131 Lupinus albus HOM05D009629 ORTHO05D012066 3.0e-19 99.0 54 88.9
TPR.G26786 Trifolium pratense HOM05D009629 ORTHO05D012066 6.7e-19 97.8 53 88.7
A04p09390 Brassica napus HOM05D009629 ORTHO05D012066 1.5e-18 96.7 55 87.3
BolSC28t60314H Brassica oleracea HOM05D009629 ORTHO05D012066 1.5e-18 96.7 55 87.3
BraSC159t45729Z Brassica rapa HOM05D009629 ORTHO05D012066 1.5e-18 96.7 55 87.3
BraSC48t46329Z Brassica rapa HOM05D009629 ORTHO05D012066 1.5e-18 96.7 55 87.3
arahy.Tifrunner.gnm1.ann1.R4WAY0 Arachis hypogaea HOM05D009629 ORTHO05D012066 4.3e-18 95.1 50 94.0
Gohir.A01G165350 Gossypium hirsutum HOM05D009629 ORTHO05D012066 2.4e-16 89.4 55 80.0
RcHm_v2.0_MTg0498521 Rosa chinensis HOM05D006493 ORTHO05D011802 9.0e-16 87.4 61 77.0
Medtr2g461800 Medicago truncatula HOM05D006493 ORTHO05D011802 1.5e-15 86.7 65 72.3
Solyc10g062050.1 Solanum lycopersicum HOM05D009629 ORTHO05D012066 9.9e-15 84.0 47 85.1
Nitab4.5_0008300g0010 Nicotiana tabacum HOM05D000435 ORTHO05D013824 7.1e-13 77.8 45 80.0
Lalb_Chr00c29g0407931 Lupinus albus HOM05D006493 ORTHO05D011802 6.7e-11 71.2 56 71.4
arahy.Tifrunner.gnm1.ann1.FPLM06 Arachis hypogaea HOM05D006493 ORTHO05D009864 9.6e-10 67.4 33 100.0
arahy.Tifrunner.gnm1.ann1.G2UG47 Arachis hypogaea HOM05D006493 ORTHO05D009864 9.6e-10 67.4 33 100.0
arahy.Tifrunner.gnm1.ann1.PL6HV0 Arachis hypogaea HOM05D006493 ORTHO05D009864 9.6e-10 67.4 33 100.0
arahy.Tifrunner.gnm1.ann1.REK9CK Arachis hypogaea HOM05D006493 ORTHO05D009864 9.6e-10 67.4 33 100.0
arahy.Tifrunner.gnm1.ann1.ZF89K8 Arachis hypogaea HOM05D006493 ORTHO05D009864 9.6e-10 67.4 33 100.0
Nitab4.5_0007362g0010 Nicotiana tabacum HOM05D006493 ORTHO05D011802 2.1e-09 66.2 33 97.0
Peaxi162Scf00489g00026 Petunia axillaris HOM05D006493 ORTHO05D011802 2.1e-09 66.2 33 97.0
PGSC0003DMG400001214 Solanum tuberosum HOM05D006493 ORTHO05D011802 2.1e-09 66.2 33 97.0
PGSC0003DMG400020931 Solanum tuberosum HOM05D006493 ORTHO05D011802 2.1e-09 66.2 33 97.0
Hma1.2p1_0110F.1_g052985 Hydrangea macrophylla HOM05D006493 ORTHO05D009864 2.8e-09 65.9 33 97.0
Lsat_1_v5_gn_5_28181 Lactuca sativa HOM05D006493 ORTHO05D011802 2.8e-09 65.9 33 97.0
CsaV3_UNG208140 Cucumis sativus L. HOM05D006493 ORTHO05D011802 4.8e-09 65.1 33 97.0
Thhalv10015951m.g Eutrema salsugineum HOM05D006493 ORTHO05D009864 8.2e-09 64.3 33 97.0
Lalb_Chr16g0390161 Lupinus albus HOM05D009629 ORTHO05D012066 1.1e-08 63.9 35 88.6
Nitab4.5_0000055g0340 Nicotiana tabacum HOM05D006493 ORTHO05D011802 1.1e-08 63.9 33 93.9
Lj2A1221T109 Lonicera japonica HOM05D001325 ORTHO05D005438 2.4e-08 62.8 31 100.0
GSVIVG01007203001 Vitis vinifera HOM05D006493 ORTHO05D009864 2.4e-08 62.8 33 93.9
Lsat_1_v5_gn_1_2680 Lactuca sativa HOM05D006493 ORTHO05D011802 6.9e-08 61.2 31 96.8
Nitab4.5_0000172g2290 Nicotiana tabacum HOM05D009629 ORTHO05D012066 6.9e-08 61.2 32 84.4
Nitab4.5_0008300g0030 Nicotiana tabacum HOM05D006493 ORTHO05D009864 1.0e-06 57.4 31 90.3


User provided reference genes

Program Settings