Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 2.4e-150 535.4 258 100.0
DCAR_001713 Daucus carota HOM05D005881 ORTHO05D007298 4.8e-34 149.1 90 78.9
Haze_07862 Corylus avellana HOM05D005881 ORTHO05D007298 9.1e-33 144.8 89 77.5
Oeu010217.3 Olea europaea HOM05D005881 ORTHO05D007298 9.1e-33 144.8 89 76.4
Cfa026039 Carpinus fangiana HOM05D005881 ORTHO05D007298 3.4e-32 142.9 89 76.4
QL02p102397 Quercus lobata HOM05D005881 ORTHO05D007298 3.4e-32 142.9 88 75.0
QL02p103034 Quercus lobata HOM05D005881 ORTHO05D007298 4.5e-32 142.5 88 75.0
vmacro19838 Vaccinium macrocarpon HOM05D005881 ORTHO05D007298 5.9e-32 142.1 76 84.2
Haze_12831 Corylus avellana HOM05D005881 ORTHO05D007298 1.0e-31 141.4 89 76.4
Oeu003780.1 Olea europaea HOM05D005881 ORTHO05D007298 1.0e-31 141.4 89 74.2
CiPaw.06G026000 Carya illinoinensis HOM05D005881 ORTHO05D007298 1.3e-31 141.0 75 85.3
Sed0016149 Sechium edule HOM05D005881 ORTHO05D007298 1.7e-31 140.6 76 81.6
CSS0041173 Camellia sinensis var. sinensis HOM05D005881 ORTHO05D007298 2.9e-31 139.8 75 82.7
ClCG10G007340 Citrullus lanatus HOM05D005881 ORTHO05D007298 2.9e-31 139.8 76 82.9
Cc02_g34860 Coffea canephora HOM05D005881 ORTHO05D007298 2.9e-31 139.8 75 82.7
arahy.Tifrunner.gnm1.ann1.8HB0N1 Arachis hypogaea HOM05D005881 ORTHO05D007298 3.8e-31 139.4 80 76.2
Prupe.1G582900 Prunus persica HOM05D005881 ORTHO05D007298 3.8e-31 139.4 83 73.5
arahy.Tifrunner.gnm1.ann1.6Q1IVA Arachis hypogaea HOM05D005881 ORTHO05D007298 5.0e-31 139.0 80 77.5
arahy.Tifrunner.gnm1.ann1.GZL8T6 Arachis hypogaea HOM05D005881 ORTHO05D007298 5.0e-31 139.0 80 77.5
Glyma.11G208400 Glycine max HOM05D005881 ORTHO05D007298 5.0e-31 139.0 76 81.6
Glyma.18G045400 Glycine max HOM05D005881 ORTHO05D007298 5.0e-31 139.0 76 81.6
Hma1.2p1_0052F.1_g029890 Hydrangea macrophylla HOM05D005881 ORTHO05D007298 5.0e-31 139.0 76 84.2
Lsat_1_v5_gn_9_121521 Lactuca sativa HOM05D005881 ORTHO05D007298 5.0e-31 139.0 78 78.2
Ciclev10002996m.g Citrus clementina HOM05D005881 ORTHO05D007298 6.5e-31 138.7 75 81.3
Gohir.D10G000200 Gossypium hirsutum HOM05D005881 ORTHO05D007298 8.5e-31 138.3 75 84.0
Manes.10G110680 Manihot esculenta HOM05D005881 ORTHO05D007298 8.5e-31 138.3 75 81.3
Aqoxy1G00234 Aquilegia oxysepala HOM05D005881 ORTHO05D007298 1.1e-30 137.9 75 81.3
Eucgr.K01416 Eucalyptus grandis HOM05D005881 ORTHO05D007298 1.1e-30 137.9 75 81.3
Gohir.1Z049413 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.1e-30 137.9 75 82.7
Gohir.1Z049621 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.1e-30 137.9 75 82.7
Duzib052G1237 Durio zibethinus HOM05D005881 ORTHO05D007298 1.4e-30 137.5 75 81.3
Potri.004G227500 Populus trichocarpa HOM05D005881 ORTHO05D007298 1.4e-30 137.5 75 81.3
Thecc.02G037800 Theobroma cacao HOM05D005881 ORTHO05D007298 1.4e-30 137.5 75 82.7
Gorai.002G000700 Gossypium raimondii HOM05D005881 ORTHO05D007298 1.9e-30 137.1 75 82.7
Nitab4.5_0001057g0140 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.9e-30 137.1 75 81.3
Peaxi162Scf00450g00736 Petunia axillaris HOM05D005881 ORTHO05D007298 2.5e-30 136.7 75 81.3
Solyc01g103190.3 Solanum lycopersicum HOM05D005881 ORTHO05D007298 2.5e-30 136.7 75 80.0
Sopen01g045600 Solanum pennellii HOM05D005881 ORTHO05D007298 2.5e-30 136.7 75 80.0
Sopen01g045620 Solanum pennellii HOM05D005881 ORTHO05D007298 2.5e-30 136.7 75 80.0
AL3G11760 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 3.2e-30 136.3 75 81.3
AL7G32920 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 3.2e-30 136.3 75 81.3
Gohir.A01G000500 Gossypium hirsutum HOM05D005881 ORTHO05D007298 3.2e-30 136.3 75 81.3
Manes.07G028000 Manihot esculenta HOM05D005881 ORTHO05D007298 3.2e-30 136.3 75 81.3
PSO017G1314 Papaver somniferum HOM05D005881 ORTHO05D007298 3.2e-30 136.3 75 82.7
Sc07g0003630 Simmondsia chinensis HOM05D005881 ORTHO05D007298 3.2e-30 136.3 75 81.3
TAR623G1668 Trochodendron aralioides HOM05D005881 ORTHO05D007298 3.2e-30 136.3 89 73.0
Ah.00g001370 Amaranthus hybridus HOM05D005881 ORTHO05D007298 4.2e-30 136.0 85 72.9
AT4G21192 Arabidopsis thaliana HOM05D005881 ORTHO05D007298 4.2e-30 136.0 75 81.3
CAN.G855.36 Capsicum annuum HOM05D005881 ORTHO05D007298 4.2e-30 136.0 75 80.0
PSO407G0212 Papaver somniferum HOM05D005881 ORTHO05D007298 4.2e-30 136.0 75 81.3
Lalb_Chr18g0053871 Lupinus albus HOM05D005881 ORTHO05D007298 5.5e-30 135.6 76 80.3
Atru.chr6.354 Acer truncatum HOM05D005881 ORTHO05D007298 7.2e-30 135.2 75 78.7
Aa31LG6G3200 Aethionema arabicum HOM05D005881 ORTHO05D007298 7.2e-30 135.2 75 80.0
MBI06_g43454_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 7.2e-30 135.2 74 83.8
PSO170G3105 Papaver somniferum HOM05D005881 ORTHO05D007298 7.2e-30 135.2 75 81.3
THA.LOC104812459 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 7.2e-30 135.2 75 78.7
arahy.Tifrunner.gnm1.ann1.VTJ29R Arachis hypogaea HOM05D005881 ORTHO05D007298 9.4e-30 134.8 85 72.9
PGR042G2514 Punica granatum HOM05D005881 ORTHO05D007298 9.4e-30 134.8 75 80.0
AUR62022918 Chenopodium quinoa HOM05D005881 ORTHO05D007298 1.2e-29 134.4 75 78.7
Migut.O00861 Erythranthe guttata HOM05D005881 ORTHO05D007298 1.2e-29 134.4 76 78.9
FvH4_5g29590 Fragaria vesca HOM05D005881 ORTHO05D007298 1.2e-29 134.4 78 74.4
EL10Ac2g04867 Beta vulgaris HOM05D005881 ORTHO05D007298 1.6e-29 134.0 77 76.6
CARHR227780 Cardamine hirsuta HOM05D005881 ORTHO05D007298 1.6e-29 134.0 75 80.0
Lj6g0001713 Lotus japonicus HOM05D005881 ORTHO05D007298 1.6e-29 134.0 76 77.6
MD09G1270200 Malus domestica HOM05D005881 ORTHO05D007298 1.6e-29 134.0 75 77.3
THA.LOC104812941 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 1.6e-29 134.0 75 78.7
CANSAT54G2245 Cannabis sativa HOM05D005881 ORTHO05D007298 2.1e-29 133.7 76 78.9
CDE08G1319 Ceratophyllum demersum HOM05D005881 ORTHO05D007298 2.1e-29 133.7 76 76.3
ECA246G1780 Erigeron canadensis HOM05D005881 ORTHO05D007298 2.7e-29 133.3 74 81.1
Medtr3g064240 Medicago truncatula HOM05D005881 ORTHO05D007298 2.7e-29 133.3 76 76.3
Nn2g11943 Nelumbo nucifera HOM05D005881 ORTHO05D007298 2.7e-29 133.3 76 78.9
RcHm_v2.0_Chr7g0222581 Rosa chinensis HOM05D005881 ORTHO05D007298 2.7e-29 133.3 75 77.3
MD17G1268300 Malus domestica HOM05D005881 ORTHO05D007298 3.6e-29 132.9 75 76.0
Os02g0560450 Oryza sativa ssp. japonica HOM05D005881 ORTHO05D007298 3.6e-29 132.9 75 78.7
TWI79G0203 Tripterygium wilfordii HOM05D005881 ORTHO05D007298 3.6e-29 132.9 75 76.0
Carub.0007s2023 Capsella rubella HOM05D005881 ORTHO05D007298 4.7e-29 132.5 75 78.7
Migut.N00857 Erythranthe guttata HOM05D005881 ORTHO05D007298 4.7e-29 132.5 74 79.7
Thhalv10026658m.g Eutrema salsugineum HOM05D005881 ORTHO05D007298 4.7e-29 132.5 76 76.3
Sp7g19280 Schrenkiella parvula HOM05D005881 ORTHO05D007298 6.1e-29 132.1 75 77.3
TPR.G37331 Trifolium pratense HOM05D005881 ORTHO05D007298 7.9e-29 131.7 76 76.3
HanXRQChr17g0543881 Helianthus annuus HOM05D005881 ORTHO05D007298 1.0e-28 131.3 75 78.7
BcaC01g00708 Brassica carinata HOM05D005881 ORTHO05D007298 1.4e-28 131.0 75 76.0
BolC3t20627H Brassica oleracea HOM05D005881 ORTHO05D007298 1.4e-28 131.0 75 76.0
BraA08t33500Z Brassica rapa HOM05D005881 ORTHO05D007298 1.4e-28 131.0 75 76.0
A03p52690 Brassica napus HOM05D005881 ORTHO05D007298 2.3e-28 130.2 78 74.4
C03p83470 Brassica napus HOM05D005881 ORTHO05D007298 3.9e-28 129.4 75 74.7
BcaC06g30655 Brassica carinata HOM05D005881 ORTHO05D007298 5.1e-28 129.0 75 77.3
BraA03t14343Z Brassica rapa HOM05D005881 ORTHO05D007298 5.1e-28 129.0 75 77.3
BcaNung00865 Brassica carinata HOM05D005881 ORTHO05D007298 8.8e-28 128.3 75 76.0
C07p51120 Brassica napus HOM05D005881 ORTHO05D007298 8.8e-28 128.3 75 76.0
BolC7t45612H Brassica oleracea HOM05D005881 ORTHO05D007298 8.8e-28 128.3 75 76.0
Gohir.1Z049575 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.5e-27 127.5 75 80.0
Gorai.002G000900 Gossypium raimondii HOM05D005881 ORTHO05D007298 1.5e-27 127.5 75 80.0
Nitab4.5_0002546g0080 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.5e-27 127.5 89 68.5
SGA_v2.0_scaffold131G34400 Striga asiatica HOM05D005881 ORTHO05D007298 1.5e-27 127.5 78 76.9
FAN18G0030 Fragaria x ananassa HOM05D005881 ORTHO05D007298 2.2e-26 123.6 95 61.1
GSVIVG01023198001 Vitis vinifera HOM05D005881 ORTHO05D007298 3.7e-26 122.9 75 72.0
PGSC0003DMG400024874 Solanum tuberosum HOM05D005881 ORTHO05D007298 5.3e-25 119.0 110 54.5
CsaV3_3G006580 Cucumis sativus L. HOM05D005881 ORTHO05D007298 7.0e-25 118.6 65 84.6
Gohir.1Z049313 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.6e-24 117.5 75 74.7
Gohir.1Z049675 Gossypium hirsutum HOM05D005881 ORTHO05D007298 5.9e-24 115.5 58 82.8
COL.COLO4_17857 Corchorus olitorius HOM05D005881 ORTHO05D007298 7.7e-24 115.2 64 82.8
Haze_20435 Corylus avellana HOM05D005881 ORTHO05D007298 1.3e-23 114.4 75 76.0
Gohir.A01G140426 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.2e-23 113.6 64 81.2
Cfa026049 Carpinus fangiana HOM05D005881 ORTHO05D007298 1.1e-22 111.3 78 71.8
Zm00001eb244030 Zea mays HOM05D005881 ORTHO05D007298 1.5e-22 110.9 64 78.1
Cfa021151 Carpinus fangiana HOM05D005881 ORTHO05D007298 1.9e-22 110.5 75 73.3
Mapoly0035s0117 Marchantia polymorpha HOM05D005881 ORTHO05D007298 7.2e-22 108.6 74 62.2
unitig_22.g6105 Utricularia gibba HOM05D005881 ORTHO05D007298 1.2e-21 107.8 78 67.9
Gorai.011G000600 Gossypium raimondii HOM05D005881 ORTHO05D007298 1.6e-21 107.5 66 80.3
Nitab4.5_0001057g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.6e-21 107.5 61 82.0
Gohir.1Z049721 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.1e-21 107.1 66 78.8
Rhsim11G0129900 Rhododendron simsii HOM05D005881 ORTHO05D007298 2.7e-21 106.7 61 78.7
A08p15220 Brassica napus HOM05D005881 ORTHO05D007298 6.1e-21 105.5 68 70.6
AagrBONN_evm.TU.Sc2ySwM_117.2390 Anthoceros agrestis HOM05D005881 ORTHO05D007298 1.0e-20 104.8 89 51.7
MBI06_g45555_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 1.8e-20 104.0 61 80.3
Phvul.006G085400 Phaseolus vulgaris HOM05D005881 ORTHO05D007298 3.0e-20 103.2 50 78.0
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 5.7e-19 99.0 91 52.7
Haze_10676 Corylus avellana HOM05D005881 ORTHO05D007298 1.3e-18 97.8 73 69.9
Rhsim06G0200500 Rhododendron simsii HOM05D005881 ORTHO05D007298 1.3e-18 97.8 61 72.1
Haze_09300 Corylus avellana HOM05D005881 ORTHO05D007298 2.2e-18 97.1 73 69.9
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 1.1e-17 94.7 56 69.6
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 1.1e-17 94.7 56 69.6
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 1.1e-17 94.7 72 66.7
BcaC02g10665 Brassica carinata HOM05D005881 ORTHO05D007298 5.3e-17 92.4 48 77.1
C04p26430 Brassica napus HOM05D005881 ORTHO05D007298 5.3e-17 92.4 48 77.1
BolC4t24162H Brassica oleracea HOM05D005881 ORTHO05D007298 5.3e-17 92.4 48 77.1
SGA_v2.0_scaffold12G06017 Striga asiatica HOM05D009140 ORTHO05D010636 1.6e-16 90.9 90 40.0
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 3.8e-15 86.3 77 50.6
HPP92_009201 Vanilla planifolia HOM05D005881 ORTHO05D007298 5.0e-15 85.9 49 85.7
EL10Ac7g16281 Beta vulgaris HOM05D005881 ORTHO05D007298 3.2e-14 83.2 66 60.6
SGA_v2.0_scaffold263G46022 Striga asiatica HOM05D009140 ORTHO05D010636 9.4e-14 81.6 78 50.0
SGA_v2.0_scaffold11G05675 Striga asiatica HOM05D023122 ORTHO05D010636 3.6e-13 79.7 78 42.3
SGA_v2.0_scaffold26G11238 Striga asiatica HOM05D008147 ORTHO05D010215 6.8e-12 75.5 90 40.0
SGA_v2.0_scaffold57G20155 Striga asiatica HOM05D009140 ORTHO05D010636 8.8e-12 75.1 71 43.7
SGA_v2.0_scaffold134G34731 Striga asiatica HOM05D009140 ORTHO05D000004 2.0e-11 73.9 90 36.7
SGA_v2.0_scaffold212G42204 Striga asiatica HOM05D009140 ORTHO05D011213 2.6e-11 73.6 84 39.3
SGA_v2.0_scaffold67G22642 Striga asiatica HOM05D000407 ORTHO05D000004 3.4e-11 73.2 90 40.0
SGA_v2.0_scaffold6G03466 Striga asiatica HOM05D000003 ORTHO05D000004 3.4e-11 73.2 88 37.5
MELO3C032219.2 Cucumis melo HOM05D005881 ORTHO05D007298 7.5e-11 72.0 35 80.0
SGA_v2.0_scaffold23G10019 Striga asiatica HOM05D000003 ORTHO05D000004 7.5e-11 72.0 88 38.6
SGA_v2.0_scaffold214G42292 Striga asiatica HOM05D011272 ORTHO05D010636 8.3e-10 68.6 65 43.1
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 1.4e-09 67.8 71 50.7
arahy.Tifrunner.gnm1.ann1.0A1TZX Arachis hypogaea HOM05D001400 ORTHO05D016394 2.4e-09 67.0 48 54.2
MBI06_g35042_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 2.4e-09 67.0 62 54.8
SGA_v2.0_scaffold81G26044 Striga asiatica HOM05D000123 ORTHO05D000004 5.4e-09 65.9 95 34.7
SGA_v2.0_scaffold37G14870 Striga asiatica HOM05D011272 ORTHO05D010636 9.1e-09 65.1 62 41.9
SHI38298 Sapria himalayana HOM05D005881 ORTHO05D000001 1.6e-08 64.3 39 66.7
SGA_v2.0_scaffold43G16397 Striga asiatica HOM05D009140 ORTHO05D010215 2.7e-08 63.5 88 36.4
SGA_v2.0_scaffold61G21170 Striga asiatica HOM05D009140 ORTHO05D010215 2.7e-08 63.5 75 38.7
MCO07G551 Micromonas commoda HOM05D005881 ORTHO05D007298 4.5e-08 62.8 71 38.0
SGA_v2.0_scaffold31G12742 Striga asiatica HOM05D000073 ORTHO05D000033 4.5e-08 62.8 67 46.3
Nitab4.5_0001129g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.0e-07 61.6 37 83.8
SGA_v2.0_scaffold76G25079 Striga asiatica HOM05D009140 ORTHO05D000004 1.0e-07 61.6 56 50.0
SGA_v2.0_scaffold259G45819 Striga asiatica HOM05D000003 ORTHO05D000004 1.3e-07 61.2 87 33.3
SGA_v2.0_scaffold36G14413 Striga asiatica HOM05D000003 ORTHO05D011213 1.3e-07 61.2 69 42.0
SGA_v2.0_scaffold61G21225 Striga asiatica HOM05D000003 ORTHO05D000006 1.3e-07 61.2 46 56.5
SGA_v2.0_scaffold163G37969 Striga asiatica HOM05D000003 ORTHO05D000004 1.7e-07 60.8 87 33.3
SGA_v2.0_scaffold151G36755 Striga asiatica HOM05D000003 ORTHO05D000004 6.5e-07 58.9 87 31.0
SGA_v2.0_scaffold58G20592 Striga asiatica HOM05D000003 ORTHO05D017149 8.5e-07 58.5 101 33.7
SGA_v2.0_scaffold146G36167 Striga asiatica HOM05D011272 ORTHO05D010636 1.9e-06 57.4 60 41.7
SGA_v2.0_scaffold206G41847 Striga asiatica HOM05D000254 ORTHO05D010636 1.9e-06 57.4 43 58.1
SGA_v2.0_scaffold122G33296 Striga asiatica HOM05D000003 ORTHO05D000004 2.5e-06 57.0 89 31.5
SGA_v2.0_scaffold16G07865 Striga asiatica HOM05D000341 ORTHO05D001197 2.5e-06 57.0 64 45.3
SGA_v2.0_scaffold64G21958 Striga asiatica HOM05D020088 ORTHO05D010636 4.2e-06 56.2 68 36.8
SGA_v2.0_scaffold450G51801 Striga asiatica HOM05D011272 ORTHO05D010636 5.5e-06 55.8 49 46.9
SGA_v2.0_scaffold215G42323 Striga asiatica HOM05D008147 ORTHO05D010215 7.2e-06 55.5 72 37.5
SalBow5G0226 Salvia bowleyana HOM05D005881 ORTHO05D007298 9.4e-06 55.1 37 62.2
SGA_v2.0_scaffold208G41982 Striga asiatica HOM05D009140 ORTHO05D010636 9.4e-06 55.1 56 41.1


User provided reference genes

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