Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold253G45188 Striga asiatica HOM05D003418 ORTHO05D004105 1.1e-58 229.9 135 100.0
SalBow7G0626 Salvia bowleyana HOM05D003418 ORTHO05D004105 3.0e-27 125.6 128 57.8
Cfa007215 Carpinus fangiana HOM05D003418 ORTHO05D004105 1.5e-23 113.2 128 55.5
Haze_14888 Corylus avellana HOM05D003418 ORTHO05D004105 3.4e-23 112.1 128 54.7
SalBow4G1936 Salvia bowleyana HOM05D003418 ORTHO05D004105 1.2e-20 103.6 122 51.6
SalBow4G0150 Salvia bowleyana HOM05D003418 ORTHO05D004105 2.7e-20 102.4 122 51.6
Cc07_g00970 Coffea canephora HOM05D003418 ORTHO05D004105 5.6e-18 94.7 115 53.9
CiPaw.03G057000 Carya illinoinensis HOM05D003418 ORTHO05D004105 1.6e-17 93.2 131 46.6
Nn3g16424 Nelumbo nucifera HOM05D003418 ORTHO05D004105 6.2e-17 91.3 130 45.4
TAR374G1678 Trochodendron aralioides HOM05D003418 ORTHO05D004105 4.0e-16 88.6 128 45.3
Dinv11681 Davidia involucrata HOM05D003418 ORTHO05D004105 1.2e-15 87.0 133 47.4
CiPaw.06G104400 Carya illinoinensis HOM05D003418 ORTHO05D004105 4.5e-15 85.1 130 45.4
Haze_12439 Corylus avellana HOM05D003418 ORTHO05D004105 4.5e-15 85.1 114 50.9
PGSC0003DMG400013209 Solanum tuberosum HOM05D003418 ORTHO05D004105 7.6e-15 84.3 110 48.2
Prupe.1G223700 Prunus persica HOM05D003418 ORTHO05D004105 9.9e-15 84.0 113 51.3
TAR629G2062 Trochodendron aralioides HOM05D003418 ORTHO05D004105 1.7e-14 83.2 113 46.9
AUR62017773 Chenopodium quinoa HOM05D003418 ORTHO05D004105 2.9e-14 82.4 117 47.0
Ca_16446_v3 Cicer arietinum L. HOM05D003418 ORTHO05D004105 8.4e-14 80.9 111 50.5
CAN.G7.14 Capsicum annuum HOM05D003418 ORTHO05D004105 1.1e-13 80.5 110 47.3
Aa31LG7G9910 Aethionema arabicum HOM05D003418 ORTHO05D004105 1.4e-13 80.1 120 44.2
CiPaw.05G107800 Carya illinoinensis HOM05D003418 ORTHO05D004105 1.4e-13 80.1 138 42.0
PGR119G0689 Punica granatum HOM05D003418 ORTHO05D004105 1.4e-13 80.1 127 40.9
Ciclev10017602m.g Citrus clementina HOM05D003418 ORTHO05D004105 1.9e-13 79.7 112 44.6
EL10Ac6g15425 Beta vulgaris HOM05D000704 ORTHO05D000526 2.4e-13 79.3 116 47.4
Carub.0001s2582 Capsella rubella HOM05D003418 ORTHO05D004105 2.4e-13 79.3 128 43.0
THA.LOC104807496 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 2.4e-13 79.3 133 42.1
Eucgr.I01636 Eucalyptus grandis HOM05D003418 ORTHO05D004105 3.2e-13 79.0 109 45.9
FAN17G2596 Fragaria x ananassa HOM05D003418 ORTHO05D004105 3.2e-13 79.0 118 46.6
Actinidia08059 Actinidia chinensis HOM05D003418 ORTHO05D004105 4.2e-13 78.6 134 50.7
TWI18G0155 Tripterygium wilfordii HOM05D003418 ORTHO05D004105 4.2e-13 78.6 111 49.5
Cc11_g17090 Coffea canephora HOM05D003418 ORTHO05D004105 5.5e-13 78.2 137 41.6
Lj6g0011251 Lotus japonicus HOM05D003418 ORTHO05D004105 5.5e-13 78.2 111 47.7
Psat5g098080 Pisum sativum HOM05D003418 ORTHO05D004105 5.5e-13 78.2 126 42.9
DCAR_024672 Daucus carota HOM05D003418 ORTHO05D004105 7.1e-13 77.8 113 46.9
Glyma.19G093400 Glycine max HOM05D003418 ORTHO05D004105 7.1e-13 77.8 118 44.9
Nn4g22281 Nelumbo nucifera HOM05D003418 ORTHO05D004105 7.1e-13 77.8 123 45.5
CARHR026860 Cardamine hirsuta HOM05D003418 ORTHO05D004105 9.3e-13 77.4 115 44.3
Medtr3g084990 Medicago truncatula HOM05D003418 ORTHO05D004105 9.3e-13 77.4 112 47.3
AL1G40690 Arabidopsis lyrata HOM05D003418 ORTHO05D004105 1.2e-12 77.0 114 47.4
Gohir.D12G153300 Gossypium hirsutum HOM05D003418 ORTHO05D004105 1.2e-12 77.0 127 42.5
Hma1.2p1_0065F.1_g035230 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 1.2e-12 77.0 114 43.9
CSS0043963 Camellia sinensis var. sinensis HOM05D003418 ORTHO05D004105 1.6e-12 76.6 113 50.4
Gorai.008G165800 Gossypium raimondii HOM05D003418 ORTHO05D004105 1.6e-12 76.6 127 42.5
CANSAT01G2188 Cannabis sativa HOM05D003418 ORTHO05D004105 2.1e-12 76.3 134 43.3
Gohir.A12G149400 Gossypium hirsutum HOM05D003418 ORTHO05D004105 2.1e-12 76.3 127 42.5
THA.LOC104825492 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 2.1e-12 76.3 127 42.5
Glyma.11G252200 Glycine max HOM05D003418 ORTHO05D004105 2.7e-12 75.9 111 49.5
Solyc05g015710.3 Solanum lycopersicum HOM05D003418 ORTHO05D004105 2.7e-12 75.9 128 43.8
THA.LOC104807144 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 2.7e-12 75.9 115 44.3
THA.LOC104809188 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 2.7e-12 75.9 115 44.3
THA.LOC104822793 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 2.7e-12 75.9 115 44.3
Thhalv10009048m.g Eutrema salsugineum HOM05D003418 ORTHO05D004105 3.5e-12 75.5 117 45.3
HanXRQChr06g0174711 Helianthus annuus HOM05D003418 ORTHO05D004105 3.5e-12 75.5 126 42.9
Phvul.001G263300 Phaseolus vulgaris HOM05D003418 ORTHO05D004105 3.5e-12 75.5 126 43.7
PGSC0003DMG401021901 Solanum tuberosum HOM05D003418 ORTHO05D004105 3.5e-12 75.5 120 43.3
Ciclev10032970m.g Citrus clementina HOM05D003418 ORTHO05D004105 4.6e-12 75.1 111 45.0
Lj4g0014081 Lotus japonicus HOM05D003418 ORTHO05D004105 4.6e-12 75.1 114 45.6
FAN07G2322 Fragaria x ananassa HOM05D003418 ORTHO05D004105 6.0e-12 74.7 118 46.6
Hma1.2p1_0275F.1_g110610 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 7.9e-12 74.3 114 46.5
Lsat_1_v5_gn_3_30720 Lactuca sativa HOM05D000660 ORTHO05D000766 7.9e-12 74.3 110 44.5
Duzib251G0418 Durio zibethinus HOM05D003418 ORTHO05D004105 1.0e-11 73.9 126 42.1
TPR.G17778 Trifolium pratense HOM05D003418 ORTHO05D004105 1.0e-11 73.9 110 52.7
Dinv17578 Davidia involucrata HOM05D003418 ORTHO05D004105 1.3e-11 73.6 131 39.7
Manes.13G009900 Manihot esculenta HOM05D003418 ORTHO05D004105 1.3e-11 73.6 110 43.6
RcHm_v2.0_Chr4g0429941 Rosa chinensis HOM05D003418 ORTHO05D004105 1.3e-11 73.6 136 46.3
Sopen05g011160 Solanum pennellii HOM05D003418 ORTHO05D004105 1.3e-11 73.6 120 45.0
TWI36G1005 Tripterygium wilfordii HOM05D003418 ORTHO05D004105 1.3e-11 73.6 125 44.8
FAN12G4113 Fragaria x ananassa HOM05D003418 ORTHO05D004105 1.8e-11 73.2 117 47.0
Glyma.18G004900 Glycine max HOM05D003418 ORTHO05D004105 1.8e-11 73.2 126 45.2
Lsat_1_v5_gn_2_93281 Lactuca sativa HOM05D003418 ORTHO05D004105 1.8e-11 73.2 119 47.1
MD16G1121700 Malus domestica HOM05D003418 ORTHO05D004105 1.8e-11 73.2 115 48.7
Nitab4.5_0000340g0030 Nicotiana tabacum HOM05D003418 ORTHO05D004105 1.8e-11 73.2 123 43.9
SHI04041 Sapria himalayana HOM05D000704 ORTHO05D000526 1.8e-11 73.2 131 42.0
Thecc.02G204700 Theobroma cacao HOM05D003418 ORTHO05D004105 1.8e-11 73.2 126 46.8
CANSAT64G1003 Cannabis sativa HOM05D003418 ORTHO05D004105 2.3e-11 72.8 137 46.7
Potri.003G170300 Populus trichocarpa HOM05D003418 ORTHO05D004105 2.3e-11 72.8 125 43.2
Ca_18018_v3 Cicer arietinum L. HOM05D003418 ORTHO05D004105 3.0e-11 72.4 110 44.5
MELO3C022314.2 Cucumis melo HOM05D003418 ORTHO05D004105 3.0e-11 72.4 113 38.9
AT1G27290 Arabidopsis thaliana HOM05D003418 ORTHO05D004105 3.9e-11 72.0 116 41.4
arahy.Tifrunner.gnm1.ann1.R9UC9A Arachis hypogaea HOM05D003418 ORTHO05D004105 3.9e-11 72.0 112 46.4
arahy.Tifrunner.gnm1.ann1.V484X6 Arachis hypogaea HOM05D003418 ORTHO05D004105 3.9e-11 72.0 112 46.4
C03p73650 Brassica napus HOM05D003418 ORTHO05D004105 3.9e-11 72.0 123 43.1
CsaV3_4G002780 Cucumis sativus L. HOM05D003418 ORTHO05D004105 3.9e-11 72.0 120 45.8
FvH4_4g23540 Fragaria vesca HOM05D003418 ORTHO05D004105 3.9e-11 72.0 120 45.8
Potri.001G058100 Populus trichocarpa HOM05D003418 ORTHO05D004105 3.9e-11 72.0 127 41.7
BcaB03g14004 Brassica carinata HOM05D003418 ORTHO05D004105 5.1e-11 71.6 113 42.5
Duzib268G0386 Durio zibethinus HOM05D003418 ORTHO05D004105 5.1e-11 71.6 125 40.8
Manes.12G009300 Manihot esculenta HOM05D003418 ORTHO05D004105 5.1e-11 71.6 127 39.4
QL03p052131 Quercus lobata HOM05D003418 ORTHO05D004105 5.1e-11 71.6 117 41.9
Actinidia04435 Actinidia chinensis HOM05D003418 ORTHO05D004105 8.7e-11 70.9 112 46.4
A08p26430 Brassica napus HOM05D003418 ORTHO05D004105 8.7e-11 70.9 127 41.7
BolC3t19656H Brassica oleracea HOM05D003418 ORTHO05D004105 8.7e-11 70.9 127 41.7
Lsat_1_v5_gn_4_781 Lactuca sativa HOM05D003418 ORTHO05D004105 8.7e-11 70.9 111 40.5
MBI11_g22683_MAGBIO Magnolia biondii HOM05D003418 ORTHO05D004105 8.7e-11 70.9 115 43.5
MD13G1121400 Malus domestica HOM05D003418 ORTHO05D004105 8.7e-11 70.9 114 50.0
Nitab4.5_0000067g0190 Nicotiana tabacum HOM05D003418 ORTHO05D004105 8.7e-11 70.9 111 48.6
Psat7g077520 Pisum sativum HOM05D003418 ORTHO05D004105 8.7e-11 70.9 112 40.2
CsaV3_6G008230 Cucumis sativus L. HOM05D003418 ORTHO05D004105 1.1e-10 70.5 113 38.1
Duzib248G1492 Durio zibethinus HOM05D003418 ORTHO05D004105 1.1e-10 70.5 126 40.5
PSO478G5262 Papaver somniferum HOM05D003418 ORTHO05D004105 1.5e-10 70.1 126 37.3
Sed0008687 Sechium edule HOM05D003418 ORTHO05D004105 1.5e-10 70.1 127 40.9
BraA08t34595Z Brassica rapa HOM05D003418 ORTHO05D004105 1.9e-10 69.7 127 40.9
Cpa.g.sc43.80 Carica papaya HOM05D003418 ORTHO05D004105 1.9e-10 69.7 109 42.2
PGR102G1973 Punica granatum HOM05D003418 ORTHO05D004105 1.9e-10 69.7 110 41.8
SGA_v2.0_scaffold95G28802 Striga asiatica HOM05D003418 ORTHO05D400401 2.5e-10 69.3 105 51.4
Oeu056671.1 Olea europaea HOM05D003418 ORTHO05D004105 3.3e-10 68.9 111 43.2
HanXRQChr05g0128721 Helianthus annuus HOM05D003418 ORTHO05D004105 4.3e-10 68.6 123 40.7
Sc11g0000380 Simmondsia chinensis HOM05D003418 ORTHO05D004105 4.3e-10 68.6 129 38.0
BcaC05g26544 Brassica carinata HOM05D003418 ORTHO05D004105 5.6e-10 68.2 124 42.7
Glyma.05G148600 Glycine max HOM05D003418 ORTHO05D004105 7.4e-10 67.8 111 45.9
Nitab4.5_0005872g0010 Nicotiana tabacum HOM05D003418 ORTHO05D004105 7.4e-10 67.8 119 42.0
PSO017G5305 Papaver somniferum HOM05D003418 ORTHO05D004105 7.4e-10 67.8 126 38.1
Sabra01G0041900 Salix brachista HOM05D003418 ORTHO05D004105 7.4e-10 67.8 110 43.6
VMungo0251G0083 Vigna mungo HOM05D003418 ORTHO05D004105 7.4e-10 67.8 110 45.5
ClCG07G015190 Citrullus lanatus HOM05D003418 ORTHO05D004105 9.6e-10 67.4 107 47.7
MELO3C017764.2 Cucumis melo HOM05D003418 ORTHO05D004105 9.6e-10 67.4 104 48.1
MBI07_g11273_MAGBIO Magnolia biondii HOM05D003418 ORTHO05D004105 9.6e-10 67.4 113 43.4
Medtr7g028805 Medicago truncatula HOM05D003418 ORTHO05D004105 9.6e-10 67.4 127 43.3
BcaB03g12071 Brassica carinata HOM05D003418 ORTHO05D004105 1.3e-09 67.0 122 40.2
C05p25990 Brassica napus HOM05D003418 ORTHO05D004105 1.3e-09 67.0 126 43.7
Medtr8g097040 Medicago truncatula HOM05D003418 ORTHO05D004105 1.3e-09 67.0 127 41.7
Phvul.L003346 Phaseolus vulgaris HOM05D003418 ORTHO05D004105 1.6e-09 66.6 110 46.4
MSTRG.8015 Avicennia marina HOM05D003418 ORTHO05D004105 2.8e-09 65.9 129 36.4
C07p17920 Brassica napus HOM05D003418 ORTHO05D004105 2.8e-09 65.9 114 40.4
Lj1g0017862 Lotus japonicus HOM05D003418 ORTHO05D004105 2.8e-09 65.9 111 46.8
BolC7t42298H Brassica oleracea HOM05D003418 ORTHO05D004105 3.7e-09 65.5 114 40.4
Hma1.2p1_1057F.1_g252730 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 4.8e-09 65.1 60 61.7
TPR.G29062 Trifolium pratense HOM05D003418 ORTHO05D004105 4.8e-09 65.1 120 39.2
A07p11990 Brassica napus HOM05D003418 ORTHO05D004105 6.2e-09 64.7 114 40.4
Rhsim08G0042100 Rhododendron simsii HOM05D003418 ORTHO05D004105 6.2e-09 64.7 112 42.9
SGA_v2.0_scaffold87G27173 Striga asiatica HOM05D003418 ORTHO05D004105 6.2e-09 64.7 110 42.7
Aqoxy3G01580 Aquilegia oxysepala HOM05D003418 ORTHO05D004105 8.2e-09 64.3 131 43.5
EL10Ac6g13525 Beta vulgaris HOM05D003418 ORTHO05D004105 8.2e-09 64.3 116 42.2
BraA07t28984Z Brassica rapa HOM05D003418 ORTHO05D004105 8.2e-09 64.3 114 40.4
SalBow8G1362 Salvia bowleyana HOM05D003418 ORTHO05D004105 1.4e-08 63.5 112 39.3
Gorai.005G165100 Gossypium raimondii HOM05D003418 ORTHO05D004105 1.8e-08 63.2 128 38.3
Oeu049146.3 Olea europaea HOM05D003418 ORTHO05D004105 1.8e-08 63.2 111 40.5
ATR0561G224 Amborella trichopoda HOM05D003418 ORTHO05D004105 2.4e-08 62.8 111 40.5
unitig_22.g6403 Utricularia gibba HOM05D003418 ORTHO05D003127 2.4e-08 62.8 110 40.9
Actinidia09637 Actinidia chinensis HOM05D003418 ORTHO05D004105 3.1e-08 62.4 111 43.2
arahy.Tifrunner.gnm1.ann1.V4TZMI Arachis hypogaea HOM05D003418 ORTHO05D004105 3.1e-08 62.4 112 42.0
arahy.Tifrunner.gnm1.ann1.XFVS70 Arachis hypogaea HOM05D003418 ORTHO05D004105 3.1e-08 62.4 112 42.0
PSO017G5034 Papaver somniferum HOM05D003418 ORTHO05D004105 4.0e-08 62.0 72 52.8
Sed0026789 Sechium edule HOM05D003418 ORTHO05D004105 4.0e-08 62.0 105 41.0
Cpa.g.sc171.2 Carica papaya HOM05D003418 ORTHO05D004105 5.3e-08 61.6 133 38.3
Gohir.D02G147400 Gossypium hirsutum HOM05D003418 ORTHO05D004105 6.9e-08 61.2 128 36.7
Nitab4.5_0012747g0020 Nicotiana tabacum HOM05D003418 ORTHO05D004105 6.9e-08 61.2 93 45.2
Atru.chr11.2346 Acer truncatum HOM05D003418 ORTHO05D004105 9.0e-08 60.8 123 44.7
Sed0009671 Sechium edule HOM05D003418 ORTHO05D004105 9.0e-08 60.8 117 33.3
TPR.G17100 Trifolium pratense HOM05D003418 ORTHO05D004105 9.0e-08 60.8 108 41.7
Gohir.A03G125000 Gossypium hirsutum HOM05D003418 ORTHO05D004105 1.2e-07 60.5 126 37.3
HanXRQChr07g0198161 Helianthus annuus HOM05D003418 ORTHO05D004105 1.5e-07 60.1 106 46.2
Lalb_Chr07g0187041 Lupinus albus HOM05D003418 ORTHO05D004105 1.5e-07 60.1 106 43.4
Sopen04g016940 Solanum pennellii HOM05D003418 ORTHO05D004105 2.0e-07 59.7 59 66.1
Eucgr.H04620 Eucalyptus grandis HOM05D003418 ORTHO05D004105 2.6e-07 59.3 113 48.7
SalBow2G0507 Salvia bowleyana HOM05D003418 ORTHO05D004105 2.6e-07 59.3 119 34.5
PSO478G1430 Papaver somniferum HOM05D003418 ORTHO05D004105 4.5e-07 58.5 72 51.4
CDE06G2031 Ceratophyllum demersum HOM05D003325 ORTHO05D003852 5.8e-07 58.2 133 35.3
Gohir.D05G311100 Gossypium hirsutum HOM05D003418 ORTHO05D004105 5.8e-07 58.2 104 40.4
Gorai.002G181900 Gossypium raimondii HOM05D003418 ORTHO05D004105 5.8e-07 58.2 103 39.8
Gohir.D01G146200 Gossypium hirsutum HOM05D003418 ORTHO05D004105 7.6e-07 57.8 103 39.8
Gohir.A01G154140 Gossypium hirsutum HOM05D003418 ORTHO05D004105 1.0e-06 57.4 104 41.3
Lalb_Chr23g0278191 Lupinus albus HOM05D003418 ORTHO05D004105 1.0e-06 57.4 103 40.8
Gorai.009G332100 Gossypium raimondii HOM05D003418 ORTHO05D004105 1.3e-06 57.0 104 39.4
Lalb_Chr12g0206031 Lupinus albus HOM05D003418 ORTHO05D004105 1.3e-06 57.0 127 37.8
Rhsim12G0093300 Rhododendron simsii HOM05D003418 ORTHO05D004105 1.3e-06 57.0 110 40.0
Hund25475 Selenicereus undatus HOM05D003418 ORTHO05D004105 1.3e-06 57.0 108 40.7
Thecc.04G039200 Theobroma cacao HOM05D003418 ORTHO05D004105 1.7e-06 56.6 124 38.7
HPP92_025259 Vanilla planifolia HOM05D003418 ORTHO05D004105 2.2e-06 56.2 114 39.5
CSS0019501 Camellia sinensis var. sinensis HOM05D003418 ORTHO05D004105 3.8e-06 55.5 115 37.4
Gohir.A05G310300 Gossypium hirsutum HOM05D003418 ORTHO05D004105 3.8e-06 55.5 104 39.4
Oeu004464.1 Olea europaea HOM05D003418 ORTHO05D004105 4.9e-06 55.1 115 39.1
unitig_8.g3133 Utricularia gibba HOM05D003418 ORTHO05D004105 4.9e-06 55.1 112 39.3
Os09g0507400 Oryza sativa ssp. japonica HOM05D003418 ORTHO05D004105 6.5e-06 54.7 118 37.3
Migut.K00956 Erythranthe guttata HOM05D003418 ORTHO05D004105 8.4e-06 54.3 107 35.5


User provided reference genes

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