Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold250G44985 Striga asiatica HOM05D000563 ORTHO05D404456 2.2e-25 119.0 62 100.0
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 1.1e-19 100.1 61 88.5
Migut.D00709 Erythranthe guttata HOM05D000563 ORTHO05D000536 2.0e-18 95.9 61 83.6
MSTRG.17653 Avicennia marina HOM05D000563 ORTHO05D000536 7.8e-15 84.0 61 70.5
SGA_v2.0_scaffold8G04511 Striga asiatica HOM05D000563 ORTHO05D000536 3.0e-14 82.0 60 71.7
SGA_v2.0_scaffold60G21013 Striga asiatica HOM05D002159 ORTHO05D007297 1.5e-13 79.7 40 100.0
Oeu025954.1 Olea europaea HOM05D000563 ORTHO05D000536 1.2e-12 76.6 76 55.3
Oeu032065.1 Olea europaea HOM05D000563 ORTHO05D000536 1.6e-12 76.3 61 68.9
Dinv05243 Davidia involucrata HOM05D000563 ORTHO05D000536 8.1e-12 73.9 57 70.2
CAN.G280.9 Capsicum annuum HOM05D000563 ORTHO05D000536 1.8e-11 72.8 61 67.2
Actinidia12895 Actinidia chinensis HOM05D000563 ORTHO05D000536 3.1e-11 72.0 56 66.1
CSS0045730 Camellia sinensis var. sinensis HOM05D000563 ORTHO05D000536 4.0e-11 71.6 56 66.1
Dinv32127 Davidia involucrata HOM05D000563 ORTHO05D000536 5.2e-11 71.2 56 66.1
Nitab4.5_0002567g0100 Nicotiana tabacum HOM05D000563 ORTHO05D000536 5.2e-11 71.2 61 65.6
Nitab4.5_0008289g0020 Nicotiana tabacum HOM05D000563 ORTHO05D000536 5.2e-11 71.2 61 65.6
Solyc11g072070.3 Solanum lycopersicum HOM05D000563 ORTHO05D000536 5.2e-11 71.2 56 66.1
Sopen11g029720 Solanum pennellii HOM05D000563 ORTHO05D000536 5.2e-11 71.2 56 66.1
Peaxi162Scf00050g02418 Petunia axillaris HOM05D000563 ORTHO05D000536 8.9e-11 70.5 61 59.0
Peaxi162Scf00978g00217 Petunia axillaris HOM05D000563 ORTHO05D000536 1.2e-10 70.1 61 65.6
Cc01_g07430 Coffea canephora HOM05D000563 ORTHO05D000536 1.5e-10 69.7 56 69.6
Rhsim13G0200100 Rhododendron simsii HOM05D000563 ORTHO05D000536 1.5e-10 69.7 56 64.3
PGSC0003DMG400027397 Solanum tuberosum HOM05D000563 ORTHO05D000536 1.5e-10 69.7 56 64.3
unitig_22.g5687 Utricularia gibba HOM05D000563 ORTHO05D000536 2.0e-10 69.3 59 59.3
Nitab4.5_0002300g0090 Nicotiana tabacum HOM05D000563 ORTHO05D000536 2.6e-10 68.9 61 59.0
Hma1.2p1_0218F.1_g092490 Hydrangea macrophylla HOM05D000563 ORTHO05D000536 3.4e-10 68.6 60 61.7
Lj2A896G46 Lonicera japonica HOM05D000563 ORTHO05D000536 3.4e-10 68.6 61 62.3
Lj2A917G49 Lonicera japonica HOM05D000563 ORTHO05D000536 3.4e-10 68.6 61 62.3
Sopen01g004550 Solanum pennellii HOM05D000563 ORTHO05D000536 7.6e-10 67.4 57 61.4
Solyc01g009060.3 Solanum lycopersicum HOM05D000563 ORTHO05D000536 9.9e-10 67.0 57 59.6
TAR623G1660 Trochodendron aralioides HOM05D000563 ORTHO05D002677 1.3e-09 66.6 62 56.5
Nitab4.5_0000428g0100 Nicotiana tabacum HOM05D000563 ORTHO05D000536 2.2e-09 65.9 63 55.6
CAN.G651.14 Capsicum annuum HOM05D000563 ORTHO05D000536 2.9e-09 65.5 61 57.4
vmacro04065 Vaccinium macrocarpon HOM05D000563 ORTHO05D000536 2.9e-09 65.5 79 50.6
DCAR_031607 Daucus carota HOM05D000563 ORTHO05D000536 3.8e-09 65.1 57 64.9
QL01p007331 Quercus lobata HOM05D000563 ORTHO05D000536 3.8e-09 65.1 63 58.7
PGSC0003DMG400022701 Solanum tuberosum HOM05D000563 ORTHO05D000536 3.8e-09 65.1 57 57.9
Ciclev10015761m.g Citrus clementina HOM05D000563 ORTHO05D000536 4.9e-09 64.7 66 59.1
ECA240G1632 Erigeron canadensis HOM05D000563 ORTHO05D000536 4.9e-09 64.7 60 56.7
Lj2A917G48 Lonicera japonica HOM05D000563 ORTHO05D000536 4.9e-09 64.7 58 63.8
PSO063G2249 Papaver somniferum HOM05D000563 ORTHO05D000536 4.9e-09 64.7 62 58.1
PSO339G6203 Papaver somniferum HOM05D000563 ORTHO05D000536 4.9e-09 64.7 62 58.1
Aqoxy1G00520 Aquilegia oxysepala HOM05D000563 ORTHO05D000536 1.4e-08 63.2 62 54.8
HanXRQChr03g0090761 Helianthus annuus HOM05D000563 ORTHO05D000536 1.4e-08 63.2 56 58.9
Lj2A896G47 Lonicera japonica HOM05D000563 ORTHO05D000536 1.4e-08 63.2 58 62.1
unitig_27.g25019 Utricularia gibba HOM05D000563 ORTHO05D000536 1.4e-08 63.2 59 62.7
CSS0041659 Camellia sinensis var. sinensis HOM05D000563 ORTHO05D000536 1.9e-08 62.8 56 60.7
Ca_06139_v3 Cicer arietinum L. HOM05D000563 ORTHO05D000536 1.9e-08 62.8 62 54.8
LjContig00564g0021617 Lotus japonicus HOM05D000563 ORTHO05D000536 1.9e-08 62.8 62 51.6
Potri.004G194200 Populus trichocarpa HOM05D000563 ORTHO05D000536 1.9e-08 62.8 62 54.8
QL07p018035 Quercus lobata HOM05D000563 ORTHO05D000536 1.9e-08 62.8 62 54.8
Sabra09G0122600 Salix brachista HOM05D000563 ORTHO05D000536 1.9e-08 62.8 62 56.5
CiPaw.09G167500 Carya illinoinensis HOM05D000563 ORTHO05D000536 3.2e-08 62.0 62 51.6
COL.COLO4_28630 Corchorus olitorius HOM05D000563 ORTHO05D000536 3.2e-08 62.0 62 50.0
Dinv11353 Davidia involucrata HOM05D000563 ORTHO05D000536 3.2e-08 62.0 56 60.7
Hund10751 Selenicereus undatus HOM05D000563 ORTHO05D000536 3.2e-08 62.0 56 62.5
unitig_699.g19159 Utricularia gibba HOM05D000563 ORTHO05D000536 3.2e-08 62.0 59 59.3
GSVIVG01037518001 Vitis vinifera HOM05D000563 ORTHO05D000536 3.2e-08 62.0 62 53.2
Potri.001G184200 Populus trichocarpa HOM05D000563 ORTHO05D000536 4.1e-08 61.6 62 56.5
Potri.009G156500 Populus trichocarpa HOM05D000563 ORTHO05D000536 4.1e-08 61.6 62 56.5
Hund20975 Selenicereus undatus HOM05D000563 ORTHO05D000536 4.1e-08 61.6 62 58.1
Sc21g0006560 Simmondsia chinensis HOM05D000563 ORTHO05D000536 4.1e-08 61.6 61 57.4
PSO339G6634 Papaver somniferum HOM05D000563 ORTHO05D000536 5.4e-08 61.2 61 55.7
Psat2g023120 Pisum sativum HOM05D000563 ORTHO05D000536 5.4e-08 61.2 62 53.2
Atru.chr2.1500 Acer truncatum HOM05D000563 ORTHO05D000536 7.1e-08 60.8 62 54.8
Duzib177G0282 Durio zibethinus HOM05D000563 ORTHO05D000536 7.1e-08 60.8 62 51.6
Gohir.A11G230000 Gossypium hirsutum HOM05D000563 ORTHO05D000536 7.1e-08 60.8 58 53.4
Gohir.D11G241800 Gossypium hirsutum HOM05D000563 ORTHO05D000536 7.1e-08 60.8 58 53.4
Gorai.007G255900 Gossypium raimondii HOM05D000563 ORTHO05D000536 7.1e-08 60.8 58 53.4
Manes.08G153800 Manihot esculenta HOM05D000563 ORTHO05D000536 7.1e-08 60.8 63 55.6
TAR636G3518 Trochodendron aralioides HOM05D000563 ORTHO05D000536 7.1e-08 60.8 56 58.9
CDE07G0044 Ceratophyllum demersum HOM05D000563 ORTHO05D000536 9.2e-08 60.5 57 54.4
Duzib128G1634 Durio zibethinus HOM05D000563 ORTHO05D000536 9.2e-08 60.5 62 51.6
PSO384G1154 Papaver somniferum HOM05D000563 ORTHO05D000536 9.2e-08 60.5 61 54.1
CDE06G0183 Ceratophyllum demersum HOM05D000563 ORTHO05D000536 1.2e-07 60.1 57 54.4
Ciclev10020215m.g Citrus clementina HOM05D000563 ORTHO05D000536 1.2e-07 60.1 62 53.2
Duzib168G0305 Durio zibethinus HOM05D000563 ORTHO05D000536 1.2e-07 60.1 62 53.2
HanXRQChr13g0418871 Helianthus annuus HOM05D000563 ORTHO05D000536 1.2e-07 60.1 56 58.9
Lsat_1_v5_gn_2_38680 Lactuca sativa HOM05D000563 ORTHO05D000536 1.2e-07 60.1 55 63.6
Atru.chr3.2912 Acer truncatum HOM05D000563 ORTHO05D000536 2.1e-07 59.3 62 53.2
Potri.019G039500 Populus trichocarpa HOM05D000563 ORTHO05D000536 2.1e-07 59.3 62 54.8
TWI75G0349 Tripterygium wilfordii HOM05D000563 ORTHO05D000536 2.1e-07 59.3 62 51.6
Sabra04G0132100 Salix brachista HOM05D000563 ORTHO05D000536 2.7e-07 58.9 57 54.4
Thecc.05G243100 Theobroma cacao HOM05D000563 ORTHO05D000536 2.7e-07 58.9 62 50.0
arahy.Tifrunner.gnm1.ann1.5RUK5M Arachis hypogaea HOM05D000563 ORTHO05D000536 3.5e-07 58.5 62 53.2
arahy.Tifrunner.gnm1.ann1.877CYK Arachis hypogaea HOM05D000563 ORTHO05D000536 3.5e-07 58.5 62 53.2
MELO3C008850.2 Cucumis melo HOM05D000563 ORTHO05D000536 3.5e-07 58.5 62 51.6
CsaV3_4G011970 Cucumis sativus L. HOM05D000563 ORTHO05D000536 3.5e-07 58.5 62 51.6
Glyma.14G045500 Glycine max HOM05D000563 ORTHO05D000536 3.5e-07 58.5 62 53.2
Sed0014760 Sechium edule HOM05D000563 ORTHO05D000536 3.5e-07 58.5 62 50.0
FAN19G3010 Fragaria x ananassa HOM05D000563 ORTHO05D000536 4.6e-07 58.2 63 50.8
FAN23G0253 Fragaria x ananassa HOM05D000563 ORTHO05D000536 4.6e-07 58.2 63 50.8
FAN26G3181 Fragaria x ananassa HOM05D000563 ORTHO05D000536 4.6e-07 58.2 63 50.8
FAN28G2307 Fragaria x ananassa HOM05D000563 ORTHO05D000536 4.6e-07 58.2 63 50.8
Glyma.02G272800 Glycine max HOM05D000563 ORTHO05D000536 4.6e-07 58.2 62 51.6
Medtr5g087500 Medicago truncatula HOM05D000563 ORTHO05D000536 4.6e-07 58.2 61 50.8
Nn2g14546 Nelumbo nucifera HOM05D000563 ORTHO05D000536 4.6e-07 58.2 64 51.6
Thecc.09G264300 Theobroma cacao HOM05D000563 ORTHO05D000536 4.6e-07 58.2 62 53.2
HPP92_020334 Vanilla planifolia HOM05D000563 ORTHO05D000536 4.6e-07 58.2 55 54.5
arahy.Tifrunner.gnm1.ann1.AKSW6P Arachis hypogaea HOM05D000563 ORTHO05D000536 6.0e-07 57.8 62 53.2
ClCG04G004580 Citrullus lanatus HOM05D000563 ORTHO05D000536 6.0e-07 57.8 62 51.6
Os07g0167200 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 6.0e-07 57.8 56 58.9
arahy.Tifrunner.gnm1.ann1.45EZXP Arachis hypogaea HOM05D000563 ORTHO05D000536 7.8e-07 57.4 62 51.6
BraA01t04562Z Brassica rapa HOM05D000563 ORTHO05D000536 7.8e-07 57.4 62 54.8
Cpa.g.sc161.29 Carica papaya HOM05D000563 ORTHO05D000536 7.8e-07 57.4 56 57.1
Lsat_1_v5_gn_3_113460 Lactuca sativa HOM05D000563 ORTHO05D000536 7.8e-07 57.4 55 58.2
Manes.04G056600 Manihot esculenta HOM05D000563 ORTHO05D000536 7.8e-07 57.4 59 59.3
Medtr7g086500 Medicago truncatula HOM05D000563 ORTHO05D000536 7.8e-07 57.4 62 48.4
Phvul.001G104500 Phaseolus vulgaris HOM05D000563 ORTHO05D000536 7.8e-07 57.4 62 48.4
VMungo1383G0126 Vigna mungo HOM05D000563 ORTHO05D000536 7.8e-07 57.4 62 48.4
CSS0033673 Camellia sinensis var. sinensis HOM05D000563 ORTHO05D000536 1.0e-06 57.0 56 55.4
CDE02G4075 Ceratophyllum demersum HOM05D000563 ORTHO05D000536 1.0e-06 57.0 57 56.1
Ca_08308_v3 Cicer arietinum L. HOM05D000563 ORTHO05D000536 1.0e-06 57.0 62 50.0
COL.COLO4_25303 Corchorus olitorius HOM05D000563 ORTHO05D000536 1.0e-06 57.0 62 54.8
Sc22g0003210 Simmondsia chinensis HOM05D000563 ORTHO05D000536 1.0e-06 57.0 63 52.4
THA.LOC104802881 Tarenaya hassleriana HOM05D000563 ORTHO05D000536 1.0e-06 57.0 58 55.2
TWI60G0467 Tripterygium wilfordii HOM05D000563 ORTHO05D000536 1.0e-06 57.0 62 51.6
BcaC09g47757 Brassica carinata HOM05D000563 ORTHO05D000536 1.3e-06 56.6 62 53.2
BolC1t05812H Brassica oleracea HOM05D000563 ORTHO05D000536 1.3e-06 56.6 62 53.2
ECA233G2148 Erigeron canadensis HOM05D000563 ORTHO05D000536 1.3e-06 56.6 57 54.4
Gohir.A13G221500 Gossypium hirsutum HOM05D000563 ORTHO05D000536 1.3e-06 56.6 62 48.4
Gohir.D13G225500 Gossypium hirsutum HOM05D000563 ORTHO05D000536 1.3e-06 56.6 62 48.4
Gorai.013G256300 Gossypium raimondii HOM05D000563 ORTHO05D000536 1.3e-06 56.6 62 48.4
GSVIVG01029981001 Vitis vinifera HOM05D000563 ORTHO05D000536 1.3e-06 56.6 60 53.3
A01p41380 Brassica napus HOM05D000563 ORTHO05D000536 1.7e-06 56.2 58 58.6
BNapus_Darmor_BZH_scaffold_78p00330 Brassica napus HOM05D000563 ORTHO05D000536 1.7e-06 56.2 58 58.6
HanXRQChr14g0432171 Helianthus annuus HOM05D000563 ORTHO05D000536 1.7e-06 56.2 55 58.2
Lj1g0011818 Lotus japonicus HOM05D000563 ORTHO05D000536 1.7e-06 56.2 62 46.8
Lalb_Chr10g0105811 Lupinus albus HOM05D000563 ORTHO05D000536 1.7e-06 56.2 61 54.1
Prupe.7G012100 Prunus persica HOM05D000563 ORTHO05D000536 1.7e-06 56.2 63 52.4
Psat3g087200 Pisum sativum HOM05D000563 ORTHO05D000536 2.3e-06 55.8 62 48.4
AUR62001599 Chenopodium quinoa HOM05D000563 ORTHO05D000536 3.0e-06 55.5 62 53.2
AUR62020180 Chenopodium quinoa HOM05D000563 ORTHO05D000536 3.0e-06 55.5 62 53.2
EL10Ac7g16238 Beta vulgaris HOM05D000563 ORTHO05D000536 3.9e-06 55.1 63 55.6
CDE05G3361 Ceratophyllum demersum HOM05D000563 ORTHO05D000536 3.9e-06 55.1 57 54.4
Thhalv10020746m.g Eutrema salsugineum HOM05D000563 ORTHO05D000536 3.9e-06 55.1 62 51.6
TWI34G1538 Tripterygium wilfordii HOM05D000563 ORTHO05D000536 3.9e-06 55.1 56 55.4
CANSAT54G1779 Cannabis sativa HOM05D000563 ORTHO05D000536 5.1e-06 54.7 62 50.0
Cfa017708 Carpinus fangiana HOM05D000563 ORTHO05D000536 5.1e-06 54.7 62 48.4
RcHm_v2.0_Chr3g0496191 Rosa chinensis HOM05D000563 ORTHO05D000536 5.1e-06 54.7 64 50.0
TWI79G0882 Tripterygium wilfordii HOM05D000563 ORTHO05D000536 5.1e-06 54.7 58 53.4
AL3G13550 Arabidopsis lyrata HOM05D000563 ORTHO05D000536 6.6e-06 54.3 59 54.2
AT3G03740 Arabidopsis thaliana HOM05D000563 ORTHO05D000536 6.6e-06 54.3 59 54.2
Dinv06317 Davidia involucrata HOM05D000563 ORTHO05D000536 6.6e-06 54.3 54 59.3
Lalb_Chr14g0364811 Lupinus albus HOM05D000563 ORTHO05D000536 6.6e-06 54.3 62 46.8
Glyma.19G116300 Glycine max HOM05D000563 ORTHO05D000536 8.6e-06 53.9 62 45.2
Lalb_Chr17g0347431 Lupinus albus HOM05D000563 ORTHO05D000536 8.6e-06 53.9 57 56.1
TPR.G11682 Trifolium pratense HOM05D000563 ORTHO05D000536 8.6e-06 53.9 58 51.7


User provided reference genes

Program Settings