Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 6.1e-91 337.4 164 100.0
SGA_v2.0_scaffold250G44986 Striga asiatica HOM05D005616 ORTHO05D403636 1.0e-37 160.6 127 67.7
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 9.0e-10 67.8 60 63.3
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 9.0e-10 67.8 60 63.3
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 9.0e-10 67.8 77 48.1
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 2.6e-09 66.2 60 60.0
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 4.4e-09 65.5 60 61.7
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 4.4e-09 65.5 60 60.0
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 7.6e-09 64.7 91 47.3
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 9.9e-09 64.3 60 60.0
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 9.9e-09 64.3 60 58.3
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 1.3e-08 63.9 58 60.3
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.3e-08 63.9 58 60.3
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 1.3e-08 63.9 60 58.3
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 1.7e-08 63.5 59 57.6
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.7e-08 63.5 60 55.0
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 1.7e-08 63.5 60 56.7
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 1.7e-08 63.5 60 58.3
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 2.2e-08 63.2 60 58.3
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 2.9e-08 62.8 87 41.4
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 2.9e-08 62.8 60 56.7
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 3.8e-08 62.4 60 56.7
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 3.8e-08 62.4 59 57.6
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 3.8e-08 62.4 60 55.0
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 3.8e-08 62.4 60 53.3
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 3.8e-08 62.4 58 58.6
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 4.9e-08 62.0 87 40.2
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 4.9e-08 62.0 60 56.7
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 4.9e-08 62.0 60 55.0
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 4.9e-08 62.0 59 59.3
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 4.9e-08 62.0 60 53.3
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 4.9e-08 62.0 60 56.7
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 4.9e-08 62.0 60 56.7
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 6.4e-08 61.6 60 55.0
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 6.4e-08 61.6 60 55.0
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 6.4e-08 61.6 60 55.0
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 6.4e-08 61.6 60 55.0
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 6.4e-08 61.6 60 56.7
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 8.4e-08 61.2 60 53.3
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 1.1e-07 60.8 87 40.2
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 1.1e-07 60.8 87 39.1
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.1e-07 60.8 58 56.9
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.1e-07 60.8 58 56.9
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.1e-07 60.8 58 56.9
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.1e-07 60.8 58 56.9
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 1.4e-07 60.5 58 56.9
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.4e-07 60.5 58 56.9
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 1.4e-07 60.5 60 53.3
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 1.9e-07 60.1 59 57.6
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 2.4e-07 59.7 60 53.3
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 3.2e-07 59.3 60 53.3
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 4.2e-07 58.9 60 56.7
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 4.2e-07 58.9 87 42.5
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 5.4e-07 58.5 60 51.7
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 5.4e-07 58.5 60 55.0
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 5.4e-07 58.5 90 42.2
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 5.4e-07 58.5 60 51.7
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 7.1e-07 58.2 60 50.0
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 7.1e-07 58.2 58 53.4
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 7.1e-07 58.2 58 53.4
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 7.1e-07 58.2 59 54.2
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 9.3e-07 57.8 60 55.0
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 9.3e-07 57.8 60 51.7
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 9.3e-07 57.8 60 53.3
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 9.3e-07 57.8 60 55.0
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 9.3e-07 57.8 86 41.9
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 1.2e-06 57.4 60 51.7
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.2e-06 57.4 60 56.7
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 1.2e-06 57.4 87 41.4
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 1.6e-06 57.0 60 51.7
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 1.6e-06 57.0 59 52.5
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 1.6e-06 57.0 59 50.8
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 1.6e-06 57.0 60 55.0
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 1.6e-06 57.0 58 53.4
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 2.1e-06 56.6 60 50.0
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 2.1e-06 56.6 60 50.0
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 2.1e-06 56.6 60 50.0
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 2.1e-06 56.6 60 51.7
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 2.7e-06 56.2 59 52.5
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 2.7e-06 56.2 60 50.0
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 3.5e-06 55.8 58 51.7
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 4.6e-06 55.5 58 51.7
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 4.6e-06 55.5 60 48.3
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 6.0e-06 55.1 60 50.0
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 6.0e-06 55.1 60 51.7
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 6.0e-06 55.1 60 50.0


User provided reference genes

Program Settings