Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 0.0e+00 1318.1 669 100.0
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 6.0e-129 465.7 828 38.6
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 2.2e-123 447.2 712 42.0
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 5.1e-120 436.0 680 42.9
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 1.1e-111 408.3 741 38.2
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 2.0e-92 344.4 725 35.3
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 2.6e-87 327.4 984 30.0
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 2.6e-84 317.4 700 34.9
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 1.7e-83 314.7 686 34.8
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 5.0e-83 313.2 710 32.4
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 7.2e-82 309.3 661 34.8
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 1.2e-81 308.5 687 34.2
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 1.8e-80 304.7 696 34.6
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 2.6e-79 300.8 700 32.9
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 1.4e-77 295.0 681 33.2
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 5.9e-76 289.7 697 32.4
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 7.7e-76 289.3 688 33.1
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 1.3e-75 288.5 685 33.4
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 1.7e-75 288.1 677 33.2
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 1.9e-74 284.6 681 32.2
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 2.5e-74 284.3 718 30.4
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 2.5e-74 284.3 652 32.8
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 7.2e-74 282.7 711 31.9
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 1.2e-73 282.0 751 31.8
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 1.2e-73 282.0 696 32.8
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 3.6e-73 280.4 689 32.7
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 5.2e-72 276.6 696 31.3
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 2.0e-71 274.6 696 31.2
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 4.4e-71 273.5 715 31.3
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 9.8e-71 272.3 320 45.9
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 1.3e-70 271.9 693 32.0
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 1.7e-70 271.6 772 29.1
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.3e-70 269.6 701 30.7
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 1.4e-69 268.5 687 32.8
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 2.4e-69 267.7 746 31.0
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 3.1e-69 267.3 676 31.1
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 3.5e-68 263.8 695 31.4
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 4.5e-68 263.5 753 29.5
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 7.7e-68 262.7 311 46.3
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 2.3e-67 261.2 353 43.1
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 3.8e-67 260.4 642 32.2
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 2.5e-66 257.7 673 32.2
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 3.3e-66 257.3 315 46.0
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 4.2e-66 256.9 701 31.4
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 5.5e-66 256.5 342 44.2
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 7.2e-66 256.1 696 30.9
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 9.5e-66 255.8 678 29.4
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 1.2e-65 255.4 773 29.9
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.6e-65 255.0 760 29.9
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 1.6e-65 255.0 700 31.4
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 3.6e-65 253.8 401 39.9
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.8e-64 251.5 800 29.9
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 1.8e-64 251.5 697 30.8
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 2.3e-64 251.1 805 28.3
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 6.8e-64 249.6 671 29.7
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.5e-63 248.4 808 29.7
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 2.6e-63 247.7 666 31.7
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 4.4e-63 246.9 743 28.8
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 9.8e-63 245.7 695 30.9
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 2.8e-62 244.2 327 43.4
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 4.9e-62 243.4 667 30.3
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 1.1e-61 242.3 428 38.6
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 1.1e-61 242.3 675 30.7
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 2.4e-61 241.1 606 32.3
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 2.4e-61 241.1 661 29.3
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 7.0e-61 239.6 490 36.7
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 9.2e-61 239.2 850 25.9
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 4.5e-60 236.9 815 27.1
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 4.5e-60 236.9 606 32.8
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 8.6e-59 232.6 672 30.1
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 1.5e-58 231.9 795 28.8
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 1.5e-58 231.9 315 41.9
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 1.9e-58 231.5 498 35.1
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 1.9e-58 231.5 644 31.4
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 9.5e-58 229.2 361 40.2
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 1.2e-57 228.8 771 27.8
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 2.8e-57 227.6 660 29.2
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 3.6e-57 227.3 316 41.8
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 4.7e-57 226.9 729 27.0
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 8.0e-57 226.1 330 40.6
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 8.0e-57 226.1 313 41.2
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 1.8e-56 224.9 557 33.0
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 3.0e-56 224.2 316 42.1
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 3.0e-56 224.2 666 28.8
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 4.0e-56 223.8 674 29.8
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 4.0e-56 223.8 711 28.4
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 2.6e-55 221.1 322 41.6
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 9.8e-55 219.2 318 40.9
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 1.7e-54 218.4 678 29.1
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 2.9e-54 217.6 464 36.4
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 2.9e-54 217.6 320 42.2
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.4e-54 216.5 338 38.2
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 1.1e-53 215.7 311 38.6
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 1.4e-53 215.3 673 29.3
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 1.9e-53 214.9 312 41.0
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.7e-52 211.1 303 39.6
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 3.5e-52 210.7 445 34.6
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 2.3e-51 208.0 859 26.3
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 2.3e-51 208.0 586 31.2
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 3.0e-51 207.6 309 39.2
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 3.9e-51 207.2 573 31.6
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 3.9e-51 207.2 288 41.7
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 1.1e-50 205.7 303 40.3
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.3e-50 204.1 313 39.3
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 3.3e-50 204.1 726 29.2
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 2.8e-49 201.1 713 27.2
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 3.1e-48 197.6 304 37.2
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 2.0e-47 194.9 689 27.3
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 7.5e-47 193.0 284 40.8
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 4.9e-46 190.3 314 37.3
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.1e-45 189.1 694 27.1
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.4e-45 188.7 256 44.1
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.2e-45 187.6 299 38.5
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 1.3e-43 182.2 289 38.8
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 1.9e-42 178.3 277 39.0
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 4.3e-42 177.2 274 37.6
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 6.8e-40 169.9 673 26.4
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.7e-38 164.1 217 42.9
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 3.0e-35 154.5 350 33.4
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 9.5e-34 149.4 764 25.8
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 2.1e-33 148.3 299 36.8
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 1.7e-27 128.6 169 43.2
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 9.6e-26 122.9 185 39.5
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 9.6e-26 122.9 185 39.5
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 4.7e-25 120.6 198 40.4
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 1.1e-24 119.4 159 41.5
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 3.1e-24 117.9 598 23.4
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 1.1e-21 109.4 418 25.6
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 2.1e-20 105.1 211 34.6
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 2.4e-16 91.7 181 33.7
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 3.4e-15 87.8 90 44.4
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 4.9e-14 84.0 157 31.2
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 5.4e-13 80.5 170 32.4
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 6.0e-12 77.0 131 32.8
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 6.7e-11 73.6 206 29.1
Migut.E00887 Erythranthe guttata HOM05D042229 ORTHO05D035173 9.6e-10 69.7 59 50.8
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 2.8e-09 68.2 158 32.3
Ciclev10022885m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.8e-09 68.2 67 47.8
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 3.7e-09 67.8 164 32.3
Migut.C00084 Erythranthe guttata HOM05D042229 ORTHO05D035173 4.8e-09 67.4 62 46.8
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 6.2e-09 67.0 158 32.3
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 6.2e-09 67.0 351 22.8
Peaxi162Scf00297g01127 Petunia axillaris HOM05D004076 ORTHO05D004606 1.5e-07 62.4 70 41.4
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 2.0e-07 62.0 77 45.5
Hund12007 Selenicereus undatus HOM05D004076 ORTHO05D004606 2.6e-07 61.6 117 30.8
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 9.9e-07 59.7 157 30.6
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 1.3e-06 59.3 179 30.2


User provided reference genes

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