Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 4.4e-86 321.2 162 100.0
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 4.1e-55 218.4 172 67.4
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 7.6e-54 214.2 168 68.5
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 2.9e-53 212.2 171 65.5
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 6.3e-48 194.5 177 59.3
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 7.7e-46 187.6 151 66.9
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 9.4e-44 180.6 168 58.3
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 1.8e-39 166.4 175 54.9
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 9.1e-39 164.1 177 51.4
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 4.7e-35 151.8 166 54.2
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 1.8e-34 149.8 172 51.2
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 1.1e-33 147.1 166 54.2
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 1.1e-33 147.1 172 50.6
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 3.7e-32 142.1 172 49.4
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 1.6e-30 136.7 161 52.2
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 7.7e-30 134.4 179 48.0
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 1.0e-26 124.0 128 55.5
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 1.4e-26 123.6 95 64.2
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 2.3e-26 122.9 148 47.3
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 3.0e-26 122.5 156 43.6
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 3.0e-26 122.5 146 45.9
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 5.2e-26 121.7 146 49.3
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 6.7e-26 121.3 157 43.9
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 1.1e-25 120.6 85 67.1
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 2.6e-25 119.4 133 51.1
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 3.3e-25 119.0 124 50.0
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 4.4e-25 118.6 88 62.5
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 4.4e-25 118.6 136 48.5
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 4.4e-25 118.6 91 62.6
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 7.5e-25 117.9 89 60.7
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 9.7e-25 117.5 165 45.5
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 1.3e-24 117.1 92 62.0
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 1.7e-24 116.7 132 47.7
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 2.2e-24 116.3 140 50.7
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 2.8e-24 115.9 83 68.7
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 3.7e-24 115.5 136 47.1
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 3.7e-24 115.5 136 47.1
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 3.7e-24 115.5 124 49.2
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 3.7e-24 115.5 105 54.3
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 4.8e-24 115.2 83 63.9
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 6.3e-24 114.8 92 59.8
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 6.3e-24 114.8 141 44.7
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 6.3e-24 114.8 82 67.1
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 6.3e-24 114.8 156 42.3
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 8.2e-24 114.4 133 48.1
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 8.2e-24 114.4 125 49.6
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 1.1e-23 114.0 84 65.5
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 1.1e-23 114.0 85 61.2
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 1.4e-23 113.6 147 44.2
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 1.8e-23 113.2 116 50.0
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 1.8e-23 113.2 84 64.3
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 2.4e-23 112.8 125 50.4
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 3.1e-23 112.5 141 44.7
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 3.1e-23 112.5 166 38.6
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 4.1e-23 112.1 136 47.1
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 5.3e-23 111.7 116 50.0
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 5.3e-23 111.7 134 49.3
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 7.0e-23 111.3 118 51.7
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 7.0e-23 111.3 84 61.9
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 1.2e-22 110.5 81 65.4
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 1.2e-22 110.5 84 61.9
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 1.2e-22 110.5 84 61.9
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 1.6e-22 110.2 82 65.9
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 1.6e-22 110.2 90 58.9
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 2.7e-22 109.4 157 45.9
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 2.7e-22 109.4 85 61.2
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 3.5e-22 109.0 160 40.0
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 3.5e-22 109.0 83 62.7
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 3.5e-22 109.0 162 40.1
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 4.5e-22 108.6 95 57.9
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 5.9e-22 108.2 85 61.2
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 5.9e-22 108.2 84 60.7
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 5.9e-22 108.2 84 60.7
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 5.9e-22 108.2 153 41.8
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 1.0e-21 107.5 92 58.7
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 1.0e-21 107.5 83 53.0
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 1.3e-21 107.1 86 60.5
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 1.3e-21 107.1 132 47.7
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 1.7e-21 106.7 86 59.3
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 2.2e-21 106.3 86 60.5
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 2.2e-21 106.3 93 57.0
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 2.9e-21 105.9 161 41.0
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 2.9e-21 105.9 82 61.0
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 3.8e-21 105.5 148 41.9
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 3.8e-21 105.5 84 63.1
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 5.0e-21 105.1 153 41.2
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 5.0e-21 105.1 86 59.3
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 5.0e-21 105.1 90 56.7
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 6.5e-21 104.8 122 45.9
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 6.5e-21 104.8 122 45.9
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 6.5e-21 104.8 155 42.6
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 6.5e-21 104.8 82 59.8
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 6.5e-21 104.8 89 56.2
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 8.5e-21 104.4 80 63.8
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 8.5e-21 104.4 88 58.0
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 1.1e-20 104.0 144 42.4
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 1.5e-20 103.6 82 61.0
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 1.9e-20 103.2 89 53.9
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 1.9e-20 103.2 92 56.5
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 1.9e-20 103.2 76 65.8
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 1.9e-20 103.2 85 56.5
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 2.5e-20 102.8 82 61.0
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 3.2e-20 102.4 123 45.5
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 4.2e-20 102.1 153 40.5
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 5.5e-20 101.7 82 57.3
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 5.5e-20 101.7 82 59.8
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 5.5e-20 101.7 125 44.8
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 5.5e-20 101.7 93 57.0
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 7.2e-20 101.3 81 60.5
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 9.4e-20 100.9 109 48.6
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 9.4e-20 100.9 92 54.3
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 9.4e-20 100.9 87 58.6
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 2.1e-19 99.8 142 43.7
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 2.7e-19 99.4 81 58.0
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 2.7e-19 99.4 81 58.0
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 2.7e-19 99.4 144 42.4
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 8.0e-19 97.8 84 58.3
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 1.0e-18 97.4 163 42.3
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 1.0e-18 97.4 81 55.6
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.4e-18 97.1 136 43.4
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 1.8e-18 96.7 81 55.6
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 2.3e-18 96.3 133 42.1
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 2.3e-18 96.3 78 60.3
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 4.0e-18 95.5 113 48.7
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 2.6e-17 92.8 80 56.2
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 3.4e-17 92.4 136 41.9
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 3.4e-17 92.4 136 41.9
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 4.4e-17 92.0 84 54.8
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 9.8e-17 90.9 84 53.6
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 2.8e-16 89.4 76 50.0
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 3.7e-16 89.0 110 43.6
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 1.8e-15 86.7 74 58.1
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 2.4e-15 86.3 82 51.2
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 2.0e-14 83.2 130 40.0
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.7e-14 82.8 111 42.3
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 1.3e-13 80.5 93 45.2
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 2.2e-13 79.7 75 54.7
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.9e-13 79.3 111 40.5
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.5e-12 77.0 105 39.0
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.5e-12 77.0 105 39.0
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 6.1e-11 71.6 77 50.6
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 6.1e-11 71.6 77 50.6
Psat1g053320 Pisum sativum HOM05D005289 ORTHO05D006346 5.7e-09 65.1 81 44.4
Ah.08g214580 Amaranthus hybridus HOM05D005289 ORTHO05D006346 3.7e-08 62.4 70 48.6
Cre16.g687294 Chlamydomonas reinhardtii HOM05D005289 ORTHO05D006346 3.7e-08 62.4 76 43.4


User provided reference genes

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