Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10659 Striga asiatica HOM05D003218 ORTHO05D003702 8.1e-76 287.3 185 100.0
SGA_v2.0_scaffold111G31542 Striga asiatica HOM05D003218 ORTHO05D003702 9.7e-21 104.4 55 89.1
SGA_v2.0_scaffold54G19476 Striga asiatica HOM05D003218 ORTHO05D003702 9.7e-21 104.4 55 89.1
AUR62020038 Chenopodium quinoa HOM05D003218 ORTHO05D002695 1.7e-20 103.6 64 75.0
CAN.G394.76 Capsicum annuum HOM05D003218 ORTHO05D003702 3.7e-20 102.4 60 80.0
PGSC0003DMG400030421 Solanum tuberosum HOM05D003218 ORTHO05D003702 3.7e-20 102.4 53 90.6
Ah.08g220030 Amaranthus hybridus HOM05D003218 ORTHO05D003702 6.3e-20 101.7 57 82.5
SalBow2G2908 Salvia bowleyana HOM05D003218 ORTHO05D003702 6.3e-20 101.7 69 71.0
Ah.15g098630 Amaranthus hybridus HOM05D003218 ORTHO05D003702 8.2e-20 101.3 60 80.0
EL10Ac7g16069 Beta vulgaris HOM05D003218 ORTHO05D003702 8.2e-20 101.3 60 80.0
AUR62001737 Chenopodium quinoa HOM05D003218 ORTHO05D003702 8.2e-20 101.3 60 80.0
Peaxi162Scf00481g00323 Petunia axillaris HOM05D003218 ORTHO05D003702 8.2e-20 101.3 51 92.2
Nitab4.5_0006916g0020 Nicotiana tabacum HOM05D003218 ORTHO05D003702 1.1e-19 100.9 52 90.4
Solyc06g076390.3 Solanum lycopersicum HOM05D003218 ORTHO05D003702 1.1e-19 100.9 56 83.9
Sopen06g032800 Solanum pennellii HOM05D003218 ORTHO05D003702 1.1e-19 100.9 56 83.9
Oeu007659.1 Olea europaea HOM05D003218 ORTHO05D003702 1.8e-19 100.1 51 90.2
ClCG02G019890 Citrullus lanatus HOM05D003218 ORTHO05D003702 2.4e-19 99.8 56 82.1
Haze_24169 Corylus avellana HOM05D003218 ORTHO05D003702 2.4e-19 99.8 58 81.0
Haze_24174 Corylus avellana HOM05D003218 ORTHO05D003702 2.4e-19 99.8 58 81.0
CANSAT54G1307 Cannabis sativa HOM05D003218 ORTHO05D003702 3.1e-19 99.4 56 82.1
COL.COLO4_18577 Corchorus olitorius HOM05D003218 ORTHO05D003702 4.1e-19 99.0 55 83.6
Dinv34286 Davidia involucrata HOM05D003218 ORTHO05D003702 4.1e-19 99.0 55 85.5
TWI75G0827 Tripterygium wilfordii HOM05D003218 ORTHO05D003702 5.3e-19 98.6 60 76.7
Cpa.g.sc81.98 Carica papaya HOM05D003218 ORTHO05D003702 7.0e-19 98.2 79 67.1
MD03G1086200 Malus domestica HOM05D003218 ORTHO05D003702 7.0e-19 98.2 56 82.1
Oeu033634.1 Olea europaea HOM05D003218 ORTHO05D003702 7.0e-19 98.2 51 90.2
A10p06010 Brassica napus HOM05D003218 ORTHO05D003702 9.1e-19 97.8 74 63.5
Glyma.11G136100 Glycine max HOM05D003218 ORTHO05D003702 9.1e-19 97.8 87 60.9
Gohir.A07G100400 Gossypium hirsutum HOM05D003218 ORTHO05D003702 9.1e-19 97.8 86 61.6
Gohir.D07G104600 Gossypium hirsutum HOM05D003218 ORTHO05D003702 9.1e-19 97.8 55 83.6
Gorai.001G112500 Gossypium raimondii HOM05D003218 ORTHO05D003702 9.1e-19 97.8 55 83.6
Nitab4.5_0000463g0110 Nicotiana tabacum HOM05D003218 ORTHO05D003702 9.1e-19 97.8 49 91.8
Oeu053891.1 Olea europaea HOM05D003218 ORTHO05D003702 9.1e-19 97.8 55 83.6
PGR102G0701 Punica granatum HOM05D003218 ORTHO05D003702 9.1e-19 97.8 55 83.6
Hund04922 Selenicereus undatus HOM05D003218 ORTHO05D003702 9.1e-19 97.8 55 83.6
Thecc.09G315600 Theobroma cacao HOM05D003218 ORTHO05D003702 9.1e-19 97.8 55 83.6
TPR.G27370 Trifolium pratense HOM05D003218 ORTHO05D003702 9.1e-19 97.8 87 63.2
CSS0024890 Camellia sinensis var. sinensis HOM05D003218 ORTHO05D003702 1.2e-18 97.4 55 83.6
Dinv17046 Davidia involucrata HOM05D003218 ORTHO05D003702 1.2e-18 97.4 55 81.8
Dinv42990 Davidia involucrata HOM05D003218 ORTHO05D003702 1.2e-18 97.4 55 81.8
Dinv43108 Davidia involucrata HOM05D003218 ORTHO05D003702 1.2e-18 97.4 55 81.8
RcHm_v2.0_Chr5g0066351 Rosa chinensis HOM05D003218 ORTHO05D003702 1.2e-18 97.4 55 81.8
THA.LOC104810753 Tarenaya hassleriana HOM05D003218 ORTHO05D003702 1.2e-18 97.4 56 82.1
Cc01_g13340 Coffea canephora HOM05D003218 ORTHO05D003702 1.6e-18 97.1 85 61.2
Hma1.2p1_0615F.1_g189680 Hydrangea macrophylla HOM05D003218 ORTHO05D003702 1.6e-18 97.1 80 62.5
MD11G1094800 Malus domestica HOM05D003218 ORTHO05D003702 1.6e-18 97.1 56 80.4
Manes.01G169400 Manihot esculenta HOM05D003218 ORTHO05D003702 1.6e-18 97.1 55 81.8
Sed0005276 Sechium edule HOM05D003218 ORTHO05D003702 1.6e-18 97.1 55 81.8
Actinidia23918 Actinidia chinensis HOM05D003218 ORTHO05D003702 2.0e-18 96.7 55 81.8
Actinidia34426 Actinidia chinensis HOM05D003218 ORTHO05D003702 2.0e-18 96.7 55 81.8
Ciclev10028561m.g Citrus clementina HOM05D003218 ORTHO05D003702 2.0e-18 96.7 56 80.4
Hma1.2p1_1664F.1_g296410 Hydrangea macrophylla HOM05D003218 ORTHO05D003702 2.0e-18 96.7 50 88.0
Lj3g0024298 Lotus japonicus HOM05D003218 ORTHO05D003702 2.0e-18 96.7 56 80.4
Manes.02G128700 Manihot esculenta HOM05D003218 ORTHO05D003702 2.0e-18 96.7 55 81.8
Glyma.12G059800 Glycine max HOM05D003218 ORTHO05D003702 2.7e-18 96.3 55 83.6
MELO3C025890.2 Cucumis melo HOM05D003218 ORTHO05D003702 3.5e-18 95.9 55 81.8
CsaV3_7G010010 Cucumis sativus L. HOM05D003218 ORTHO05D003702 3.5e-18 95.9 55 81.8
FvH4_3g36940 Fragaria vesca HOM05D003218 ORTHO05D003702 3.5e-18 95.9 54 81.5
FAN11G1275 Fragaria x ananassa HOM05D003218 ORTHO05D003702 3.5e-18 95.9 54 81.5
FAN16G2405 Fragaria x ananassa HOM05D003218 ORTHO05D003702 3.5e-18 95.9 54 81.5
FAN21G3821 Fragaria x ananassa HOM05D003218 ORTHO05D003702 3.5e-18 95.9 54 81.5
FAN25G2385 Fragaria x ananassa HOM05D003218 ORTHO05D003702 3.5e-18 95.9 54 81.5
MSTRG.21222 Avicennia marina HOM05D003218 ORTHO05D003702 4.5e-18 95.5 55 81.8
BolC5t29321H Brassica oleracea HOM05D003218 ORTHO05D003702 4.5e-18 95.5 54 79.6
CSS0023241 Camellia sinensis var. sinensis HOM05D003218 ORTHO05D003702 4.5e-18 95.5 55 81.8
Duzib168G2307 Durio zibethinus HOM05D003218 ORTHO05D003702 4.5e-18 95.5 50 88.0
Lj3g0009557 Lotus japonicus HOM05D003218 ORTHO05D003702 4.5e-18 95.5 54 83.3
Psat5g118600 Pisum sativum HOM05D003218 ORTHO05D003702 4.5e-18 95.5 55 83.6
Potri.001G244204 Populus trichocarpa HOM05D003218 ORTHO05D003702 4.5e-18 95.5 56 76.8
Rhsim13G0077100 Rhododendron simsii HOM05D003218 ORTHO05D003702 4.5e-18 95.5 55 81.8
GSVIVG01024907001 Vitis vinifera HOM05D003218 ORTHO05D003702 4.5e-18 95.5 55 80.0
Migut.D00878 Erythranthe guttata HOM05D003218 ORTHO05D003702 5.9e-18 95.1 54 81.5
Glyma.13G339000 Glycine max HOM05D003218 ORTHO05D003702 5.9e-18 95.1 55 81.8
C05p05490 Brassica napus HOM05D003218 ORTHO05D003702 7.7e-18 94.7 54 77.8
CDE05G1682 Ceratophyllum demersum HOM05D003218 ORTHO05D003702 7.7e-18 94.7 60 76.7
Ca_01303_v3 Cicer arietinum L. HOM05D003218 ORTHO05D003702 7.7e-18 94.7 55 81.8
Eucgr.J02029 Eucalyptus grandis HOM05D003218 ORTHO05D003702 7.7e-18 94.7 55 80.0
HanXRQChr01g0010401 Helianthus annuus HOM05D003218 ORTHO05D003702 7.7e-18 94.7 80 61.2
HanXRQChr01g0010631 Helianthus annuus HOM05D003218 ORTHO05D003702 7.7e-18 94.7 80 61.2
ECA248G3960 Erigeron canadensis HOM05D003218 ORTHO05D003702 1.0e-17 94.4 55 78.2
Phvul.005G159000 Phaseolus vulgaris HOM05D003218 ORTHO05D003702 1.0e-17 94.4 55 81.8
VMungo1080G1854 Vigna mungo HOM05D003218 ORTHO05D003702 1.0e-17 94.4 55 81.8
Aa31LG5G7120 Aethionema arabicum HOM05D003218 ORTHO05D003702 1.3e-17 94.0 56 76.8
Carub.0001s0677 Capsella rubella HOM05D003218 ORTHO05D003702 1.3e-17 94.0 84 59.5
Lalb_Chr03g0026451 Lupinus albus HOM05D003218 ORTHO05D003702 1.3e-17 94.0 55 81.8
Lalb_Chr19g0137971 Lupinus albus HOM05D003218 ORTHO05D003702 1.3e-17 94.0 55 81.8
QL01p029248 Quercus lobata HOM05D003218 ORTHO05D003702 1.3e-17 94.0 54 81.5
Sabra16G0148300 Salix brachista HOM05D003218 ORTHO05D003702 1.3e-17 94.0 52 82.7
Sed0005039 Sechium edule HOM05D003218 ORTHO05D003702 1.3e-17 94.0 60 76.7
VMungo1080G0815 Vigna mungo HOM05D003218 ORTHO05D003702 1.3e-17 94.0 55 81.8
Duzib150G1564 Durio zibethinus HOM05D003218 ORTHO05D003702 1.7e-17 93.6 55 80.0
Thhalv10007946m.g Eutrema salsugineum HOM05D003218 ORTHO05D003702 1.7e-17 93.6 84 59.5
AL1G17620 Arabidopsis lyrata HOM05D003218 ORTHO05D003702 2.2e-17 93.2 84 58.3
C08p50560 Brassica napus HOM05D003218 ORTHO05D003702 2.2e-17 93.2 80 61.2
BraA08t35471Z Brassica rapa HOM05D003218 ORTHO05D003702 2.2e-17 93.2 80 61.2
Gohir.A05G093100 Gossypium hirsutum HOM05D003218 ORTHO05D003702 2.2e-17 93.2 55 83.6
Gorai.009G096500 Gossypium raimondii HOM05D003218 ORTHO05D003702 2.2e-17 93.2 55 83.6
Potri.009G036700 Populus trichocarpa HOM05D003218 ORTHO05D003702 2.2e-17 93.2 57 80.7
Prupe.6G070500 Prunus persica HOM05D003218 ORTHO05D003702 2.2e-17 93.2 55 80.0
Rhsim01G0231600 Rhododendron simsii HOM05D003218 ORTHO05D003702 2.2e-17 93.2 54 81.5
THA.LOC104800687 Tarenaya hassleriana HOM05D003218 ORTHO05D003702 2.2e-17 93.2 56 76.8
BraA10t42863Z Brassica rapa HOM05D003218 ORTHO05D003702 2.9e-17 92.8 82 58.5
AT1G07470 Arabidopsis thaliana HOM05D003218 ORTHO05D003702 3.8e-17 92.4 84 58.3
AT1G07480 Arabidopsis thaliana HOM05D003218 ORTHO05D003702 3.8e-17 92.4 84 58.3
Glyma.15G035300 Glycine max HOM05D003218 ORTHO05D003702 3.8e-17 92.4 55 80.0
Lalb_Chr24g0397181 Lupinus albus HOM05D003218 ORTHO05D003702 3.8e-17 92.4 60 78.3
Phvul.L008243 Phaseolus vulgaris HOM05D003218 ORTHO05D003702 3.8e-17 92.4 55 80.0
THA.LOC104815781 Tarenaya hassleriana HOM05D003218 ORTHO05D003702 3.8e-17 92.4 56 75.0
Aqoxy1G00871 Aquilegia oxysepala HOM05D003218 ORTHO05D003702 5.0e-17 92.0 56 75.0
BcaC07g41996 Brassica carinata HOM05D003218 ORTHO05D003702 5.0e-17 92.0 79 60.8
A08p35650 Brassica napus HOM05D003218 ORTHO05D003702 5.0e-17 92.0 84 58.3
C08p03080 Brassica napus HOM05D003218 ORTHO05D003702 5.0e-17 92.0 84 58.3
BolC8t47106H Brassica oleracea HOM05D003218 ORTHO05D003702 5.0e-17 92.0 84 58.3
Carub.0001s0680 Capsella rubella HOM05D003218 ORTHO05D003702 5.0e-17 92.0 56 75.0
AL1G17650 Arabidopsis lyrata HOM05D003218 ORTHO05D003702 6.5e-17 91.7 56 75.0
BcaB03g13393 Brassica carinata HOM05D003218 ORTHO05D003702 6.5e-17 91.7 56 75.0
A09p66400 Brassica napus HOM05D003218 ORTHO05D003702 6.5e-17 91.7 79 60.8
BolC8t52583H Brassica oleracea HOM05D003218 ORTHO05D003702 6.5e-17 91.7 79 60.8
BraA09t41976Z Brassica rapa HOM05D003218 ORTHO05D003702 6.5e-17 91.7 79 60.8
Atru.chr3.3992 Acer truncatum HOM05D003218 ORTHO05D003702 8.5e-17 91.3 60 70.0
Aa31LG1G6850 Aethionema arabicum HOM05D003218 ORTHO05D003702 8.5e-17 91.3 55 76.4
BcaC05g24695 Brassica carinata HOM05D003218 ORTHO05D003702 8.5e-17 91.3 51 80.4
BcaB02g06738 Brassica carinata HOM05D003218 ORTHO05D003702 1.1e-16 90.9 51 80.4
BcaC05g24697 Brassica carinata HOM05D003218 ORTHO05D003702 1.1e-16 90.9 51 80.4
CiPaw.13G089300 Carya illinoinensis HOM05D003218 ORTHO05D003702 1.1e-16 90.9 55 76.4
Lalb_Chr01g0003481 Lupinus albus HOM05D003218 ORTHO05D003702 1.1e-16 90.9 55 78.2
Hund18888 Selenicereus undatus HOM05D003218 ORTHO05D003702 1.5e-16 90.5 56 78.6
Thhalv10007947m.g Eutrema salsugineum HOM05D003218 ORTHO05D003702 1.9e-16 90.1 56 73.2
THA.LOC104799429 Tarenaya hassleriana HOM05D003218 ORTHO05D003702 2.5e-16 89.7 47 87.2
CDE08G0741 Ceratophyllum demersum HOM05D003218 ORTHO05D003702 4.2e-16 89.0 55 74.5
TAR369G0400 Trochodendron aralioides HOM05D003218 ORTHO05D003702 5.5e-16 88.6 55 74.5
CiPaw.14G065100 Carya illinoinensis HOM05D003218 ORTHO05D003702 9.4e-16 87.8 55 74.5
FAN21G2440 Fragaria x ananassa HOM05D003218 ORTHO05D003702 1.6e-15 87.0 60 65.0
PSO339G5513 Papaver somniferum HOM05D003218 ORTHO05D003702 2.1e-15 86.7 57 75.4
ECA247G2536 Erigeron canadensis HOM05D003218 ORTHO05D003702 2.7e-15 86.3 55 74.5
PSO063G1745 Papaver somniferum HOM05D003218 ORTHO05D003702 2.7e-15 86.3 51 76.5
Actinidia33769 Actinidia chinensis HOM05D003218 ORTHO05D003702 3.6e-15 85.9 53 73.6
DCAR_018926 Daucus carota HOM05D003218 ORTHO05D003702 4.7e-15 85.5 86 57.0
Os05g0292200 Oryza sativa ssp. japonica HOM05D003218 ORTHO05D003702 6.1e-15 85.1 57 70.2
SHI05909 Sapria himalayana HOM05D003218 ORTHO05D003702 6.1e-15 85.1 72 59.7
Mapoly0112s0032 Marchantia polymorpha HOM05D003218 ORTHO05D003702 1.4e-14 84.0 61 65.6
SEGI_10054 Sequoiadendron giganteum HOM05D003218 ORTHO05D003702 1.4e-14 84.0 57 71.9
Zm00001eb346300 Zea mays HOM05D003218 ORTHO05D003702 1.8e-14 83.6 57 68.4
Medtr2g097740 Medicago truncatula HOM05D003218 ORTHO05D003702 2.3e-14 83.2 45 84.4
Zm00001eb284630 Zea mays HOM05D003218 ORTHO05D003702 2.3e-14 83.2 56 67.9
HPP92_015484 Vanilla planifolia HOM05D003218 ORTHO05D003702 3.0e-14 82.8 45 82.2
Aqoxy2G03612 Aquilegia oxysepala HOM05D003218 ORTHO05D003702 4.0e-14 82.4 56 69.6
Nn2g11208 Nelumbo nucifera HOM05D003218 ORTHO05D003702 4.0e-14 82.4 55 69.1
Nn2g13454 Nelumbo nucifera HOM05D003218 ORTHO05D003702 4.0e-14 82.4 54 72.2
Nn3g19604 Nelumbo nucifera HOM05D003218 ORTHO05D003702 4.0e-14 82.4 60 66.7
RcHm_v2.0_Chr5g0029921 Rosa chinensis HOM05D003218 ORTHO05D003702 5.2e-14 82.0 51 72.5
TAR602G0006 Trochodendron aralioides HOM05D003218 ORTHO05D003702 5.2e-14 82.0 55 67.3
MBI17_g19510_MAGBIO Magnolia biondii HOM05D003218 ORTHO05D003702 8.8e-14 81.3 52 73.1
Lsat_1_v5_gn_9_24801 Lactuca sativa HOM05D003218 ORTHO05D003702 1.2e-13 80.9 48 72.9
CARHR007220 Cardamine hirsuta HOM05D003218 ORTHO05D003702 1.5e-13 80.5 41 90.2
TAR365G0505 Trochodendron aralioides HOM05D003218 ORTHO05D003702 1.5e-13 80.5 61 68.9
ATR0559G311 Amborella trichopoda HOM05D003218 ORTHO05D003702 2.6e-13 79.7 56 67.9
RcHm_v2.0_Chr5g0030001 Rosa chinensis HOM05D003218 ORTHO05D003702 7.5e-13 78.2 45 73.3
PSO832G1276 Papaver somniferum HOM05D003218 ORTHO05D003702 1.3e-12 77.4 61 63.9
Pp3c8_13300 Physcomitrium patens HOM05D003218 ORTHO05D003702 1.3e-12 77.4 54 68.5
BcaC07g42470 Brassica carinata HOM05D003218 ORTHO05D003702 4.8e-12 75.5 80 53.8
Pp3c24_9280 Physcomitrium patens HOM05D003218 ORTHO05D003702 6.3e-12 75.1 54 66.7
Pp3c4_18060 Physcomitrium patens HOM05D003218 ORTHO05D003702 2.4e-11 73.2 44 72.7
FvH4_3g17941 Fragaria vesca HOM05D003218 ORTHO05D003702 1.6e-10 70.5 50 62.0
PSO210G7823 Papaver somniferum HOM05D003218 ORTHO05D003702 1.6e-10 70.5 43 69.8
ATR0680G333 Amborella trichopoda HOM05D003218 ORTHO05D003702 2.7e-10 69.7 45 68.9
arahy.Tifrunner.gnm1.ann1.C2EA1B Arachis hypogaea HOM05D003218 ORTHO05D003702 2.7e-10 69.7 36 86.1
arahy.Tifrunner.gnm1.ann1.4KG4VQ Arachis hypogaea HOM05D003218 ORTHO05D003702 3.5e-10 69.3 53 64.2
MBI14_g11605_MAGBIO Magnolia biondii HOM05D003218 ORTHO05D003702 3.5e-10 69.3 45 71.1
arahy.Tifrunner.gnm1.ann1.ZE4ASG Arachis hypogaea HOM05D003218 ORTHO05D003702 7.7e-10 68.2 31 96.8
CBR_g12166 Chara braunii HOM05D000019 ORTHO05D000353 1.0e-09 67.8 55 56.4
Aa31LG1G6820 Aethionema arabicum HOM05D003218 ORTHO05D003702 1.1e-08 64.3 69 44.9
vmacro14557 Vaccinium macrocarpon HOM05D003218 ORTHO05D003702 1.1e-08 64.3 33 87.9
Lj1A146G69 Lonicera japonica HOM05D003218 ORTHO05D003702 1.9e-08 63.5 47 63.8
Aa31LG5G7000 Aethionema arabicum HOM05D003218 ORTHO05D003702 2.5e-08 63.2 40 62.5
MCO01G017 Micromonas commoda HOM05D003218 ORTHO05D003702 9.5e-08 61.2 71 42.3
vmacro03029 Vaccinium macrocarpon HOM05D003218 ORTHO05D003702 1.6e-07 60.5 33 81.8
CARHR285310 Cardamine hirsuta HOM05D003218 ORTHO05D012988 3.6e-07 59.3 48 52.1
AT5G59230 Arabidopsis thaliana HOM05D003218 ORTHO05D012988 1.8e-06 57.0 42 50.0
Thhalv10015836m.g Eutrema salsugineum HOM05D012466 ORTHO05D012988 4.0e-06 55.8 56 46.4


User provided reference genes

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