Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 5.5e-170 600.9 308 100.0
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 2.1e-116 422.9 315 72.1
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 1.8e-88 330.1 326 60.1
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 1.7e-78 297.0 322 54.0
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.6e-76 290.4 324 52.8
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 3.8e-70 269.2 315 50.8
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 7.2e-69 265.0 325 50.5
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 2.3e-67 260.0 335 49.3
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 3.7e-65 252.7 326 48.5
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 8.2e-65 251.5 307 49.8
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 7.7e-63 245.0 311 48.6
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.3e-62 244.2 330 46.4
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 2.9e-62 243.0 336 48.8
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 4.2e-61 239.2 308 48.1
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 5.5e-61 238.8 342 46.2
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 3.6e-60 236.1 339 48.4
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 8.0e-60 235.0 329 44.1
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 1.4e-59 234.2 331 46.5
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 5.2e-59 232.3 346 46.0
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 1.1e-58 231.1 322 47.2
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.5e-58 230.7 323 47.1
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.0e-58 230.3 323 47.1
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 3.3e-58 229.6 367 43.6
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 3.3e-58 229.6 357 43.4
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 5.7e-58 228.8 323 46.7
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 9.7e-58 228.0 315 46.3
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.3e-57 227.6 315 46.3
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 1.7e-57 227.3 344 42.4
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 3.1e-56 223.0 323 46.1
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 5.3e-56 222.2 361 44.9
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 7.0e-56 221.9 355 43.7
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 9.1e-56 221.5 369 40.1
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 1.6e-55 220.7 342 45.3
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 4.5e-55 219.2 322 45.3
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 4.5e-55 219.2 340 41.8
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 7.7e-55 218.4 331 45.3
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 1.0e-54 218.0 332 46.1
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 1.3e-54 217.6 369 42.3
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 2.2e-54 216.9 366 42.6
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 2.9e-54 216.5 369 42.0
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 5.0e-54 215.7 374 39.6
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 8.5e-54 214.9 332 45.8
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 8.5e-54 214.9 345 42.0
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 1.5e-53 214.2 379 40.6
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 2.5e-53 213.4 351 43.6
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 9.4e-53 211.5 366 41.5
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 9.4e-53 211.5 352 41.5
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 1.2e-52 211.1 360 41.9
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 1.6e-52 210.7 379 39.1
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 4.7e-52 209.1 315 43.5
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.8e-51 207.2 370 39.7
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 3.0e-51 206.5 374 39.6
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.5e-50 204.1 364 39.3
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 4.4e-50 202.6 351 39.9
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.3e-49 201.1 339 41.0
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.3e-49 201.1 344 40.4
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 8.3e-49 198.4 340 40.0
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 3.1e-48 196.4 350 41.1
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.6e-47 194.1 365 39.7
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.0e-47 193.7 340 38.8
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 2.7e-47 193.4 401 37.2
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 5.9e-47 192.2 374 37.7
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.0e-46 191.4 363 39.7
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 1.0e-46 191.4 334 39.5
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.7e-46 190.7 369 38.5
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 3.8e-46 189.5 449 35.4
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 6.5e-46 188.7 402 38.1
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 8.5e-46 188.3 322 41.0
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 8.5e-46 188.3 320 40.3
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 4.2e-45 186.0 321 39.6
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 4.2e-45 186.0 320 40.0
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 7.2e-45 185.3 323 39.9
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 1.6e-44 184.1 311 41.8
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 2.1e-44 183.7 319 41.7
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 6.1e-44 182.2 312 40.7
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.8e-43 180.6 329 38.3
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 8.8e-43 178.3 316 37.0
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 1.5e-42 177.6 264 43.2
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 1.5e-42 177.6 264 43.2
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.6e-42 176.8 324 39.5
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 3.7e-41 172.9 352 40.1
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 6.3e-41 172.2 338 37.6
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 6.3e-41 172.2 324 38.3
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 8.3e-41 171.8 366 37.7
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.8e-40 170.6 365 37.3
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 3.1e-40 169.9 332 35.5
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 3.1e-40 169.9 363 35.0
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 5.4e-40 169.1 305 40.3
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 2.0e-39 167.2 313 38.3
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 3.5e-39 166.4 203 51.2
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 5.9e-39 165.6 309 41.1
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 5.9e-39 165.6 144 60.4
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 1.7e-38 164.1 407 31.7
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 2.3e-38 163.7 312 37.8
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 2.3e-38 163.7 308 37.7
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 3.8e-38 162.9 352 34.7
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.9e-37 160.6 332 36.1
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 4.7e-36 156.0 340 38.5
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 4.7e-36 156.0 121 64.5
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.4e-35 154.5 321 36.8
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 2.3e-35 153.7 335 37.9
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 4.0e-35 152.9 308 38.0
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 5.2e-35 152.5 313 36.4
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 6.8e-35 152.1 318 40.3
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 6.8e-35 152.1 313 36.4
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 6.8e-35 152.1 313 36.4
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 2.6e-34 150.2 314 37.3
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 3.4e-34 149.8 310 37.1
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 4.4e-34 149.4 182 50.0
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 9.8e-34 148.3 121 62.8
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 9.8e-34 148.3 320 39.4
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 1.7e-33 147.5 279 40.5
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 1.7e-33 147.5 279 39.8
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 2.8e-33 146.7 313 34.2
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 3.7e-33 146.4 181 48.6
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.1e-32 144.8 309 35.9
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 1.4e-32 144.4 325 35.7
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 1.4e-32 144.4 325 35.7
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 3.1e-32 143.3 170 50.0
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 4.1e-32 142.9 204 46.1
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 5.4e-32 142.5 345 34.5
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 2.7e-31 140.2 305 37.0
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.5e-31 139.8 381 35.4
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 2.3e-30 137.1 179 48.0
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 8.6e-30 135.2 315 36.2
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 8.6e-30 135.2 318 35.2
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.5e-29 134.4 372 35.8
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.5e-29 134.4 340 35.3
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 4.3e-29 132.9 167 46.7
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 9.5e-29 131.7 314 34.7
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.2e-28 131.3 111 63.1
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 2.8e-28 130.2 155 51.6
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 2.8e-28 130.2 155 51.6
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 3.6e-28 129.8 164 48.2
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 3.6e-28 129.8 164 48.2
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 1.4e-27 127.9 154 51.9
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.8e-27 127.5 254 37.4
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.5e-26 124.4 157 46.5
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 4.9e-25 119.4 108 58.3
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 6.4e-25 119.0 178 46.1
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 6.4e-25 119.0 178 46.1
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 6.4e-25 119.0 178 46.1
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 5.4e-24 115.9 130 49.2
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 1.2e-23 114.8 311 30.2
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.6e-23 114.4 98 57.1
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.6e-23 114.4 98 57.1
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 2.0e-23 114.0 165 44.8
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 4.6e-23 112.8 126 52.4
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 3.9e-22 109.8 334 35.0
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 5.0e-22 109.4 74 77.0
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.5e-21 107.8 74 75.7
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 1.9e-21 107.5 157 43.3
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 4.3e-21 106.3 127 48.0
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 7.3e-21 105.5 134 42.5
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 4.7e-20 102.8 364 29.7
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 2.6e-18 97.1 171 39.2
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 2.6e-18 97.1 138 44.9
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 9.8e-18 95.1 126 46.0
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 2.9e-17 93.6 110 47.3
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 3.2e-16 90.1 161 39.8
unitig_37.g13077 Utricularia gibba HOM05D003874 ORTHO05D030560 4.1e-16 89.7 96 49.0
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 4.6e-15 86.3 160 33.8
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 2.3e-14 84.0 226 31.0
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 5.1e-14 82.8 113 44.2
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 1.1e-13 81.6 307 28.3
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 4.3e-13 79.7 125 38.4
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 5.6e-13 79.3 107 42.1
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.4e-11 74.7 260 31.2
SalBow2G2594 Salvia bowleyana HOM05D033584 ORTHO05D030560 8.9e-11 72.0 103 42.7
SalBow8G3890 Salvia bowleyana HOM05D033584 ORTHO05D030560 8.3e-09 65.5 187 32.1
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 2.4e-08 63.9 44 77.3


User provided reference genes

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