Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 5.9e-52 207.2 102 100.0
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 2.2e-30 135.6 82 76.8
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 5.0e-27 124.4 82 69.5
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 1.5e-26 122.9 78 73.1
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 4.2e-26 121.3 73 74.0
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 2.1e-25 119.0 85 65.9
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.8e-25 118.6 79 67.1
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 3.6e-25 118.2 75 72.0
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 8.0e-25 117.1 79 69.6
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 8.0e-25 117.1 87 60.9
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 8.0e-25 117.1 72 72.2
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 1.0e-24 116.7 85 64.7
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 1.0e-24 116.7 85 64.7
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 2.3e-24 115.5 79 65.8
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 2.3e-24 115.5 77 68.8
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 3.0e-24 115.2 68 75.0
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 3.0e-24 115.2 88 61.4
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 3.0e-24 115.2 75 68.0
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 4.0e-24 114.8 73 69.9
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 4.0e-24 114.8 83 67.5
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 5.2e-24 114.4 79 64.6
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 5.2e-24 114.4 77 68.8
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 5.2e-24 114.4 86 64.0
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 6.8e-24 114.0 80 68.8
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 6.8e-24 114.0 81 61.7
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 6.8e-24 114.0 75 69.3
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 8.9e-24 113.6 75 65.3
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 8.9e-24 113.6 75 65.3
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 8.9e-24 113.6 79 64.6
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 8.9e-24 113.6 73 68.5
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 1.2e-23 113.2 77 64.9
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 1.2e-23 113.2 80 67.5
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 1.2e-23 113.2 75 68.0
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 2.0e-23 112.5 77 66.2
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 2.6e-23 112.1 79 64.6
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 2.6e-23 112.1 77 66.2
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 3.4e-23 111.7 64 78.1
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 3.4e-23 111.7 68 72.1
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 3.4e-23 111.7 71 70.4
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 3.4e-23 111.7 83 65.1
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 4.4e-23 111.3 78 64.1
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 4.4e-23 111.3 74 68.9
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 5.7e-23 110.9 73 64.4
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 5.7e-23 110.9 80 62.5
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 5.7e-23 110.9 74 67.6
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 7.5e-23 110.5 75 64.0
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 7.5e-23 110.5 83 63.9
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 9.8e-23 110.2 81 61.7
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 9.8e-23 110.2 75 62.7
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 9.8e-23 110.2 75 62.7
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 9.8e-23 110.2 72 66.7
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 9.8e-23 110.2 69 71.0
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.3e-22 109.8 75 68.0
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 1.7e-22 109.4 72 65.3
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 1.7e-22 109.4 75 62.7
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.7e-22 109.4 68 70.6
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 1.7e-22 109.4 68 70.6
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 2.8e-22 108.6 71 67.6
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 2.8e-22 108.6 66 74.2
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 2.8e-22 108.6 66 74.2
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 3.7e-22 108.2 72 63.9
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 3.7e-22 108.2 69 68.1
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 3.7e-22 108.2 68 69.1
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 3.7e-22 108.2 83 62.7
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 3.7e-22 108.2 77 64.9
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 4.9e-22 107.8 91 57.1
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 4.9e-22 107.8 72 63.9
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 4.9e-22 107.8 80 60.0
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 4.9e-22 107.8 68 69.1
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 6.3e-22 107.5 72 62.5
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 6.3e-22 107.5 77 62.3
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 6.3e-22 107.5 71 66.2
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 6.3e-22 107.5 72 68.1
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 6.3e-22 107.5 72 68.1
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 8.3e-22 107.1 72 62.5
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 8.3e-22 107.1 73 63.0
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 8.3e-22 107.1 80 60.0
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 1.1e-21 106.7 72 63.9
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 1.1e-21 106.7 84 61.9
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 1.1e-21 106.7 73 68.5
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 1.1e-21 106.7 74 63.5
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.8e-21 105.9 68 67.6
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 1.8e-21 105.9 68 67.6
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 1.8e-21 105.9 96 53.1
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 2.4e-21 105.5 74 66.2
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 2.4e-21 105.5 78 57.7
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 3.1e-21 105.1 75 65.3
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 7.0e-21 104.0 73 67.1
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 9.2e-21 103.6 66 71.2
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 9.2e-21 103.6 78 62.8
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 9.2e-21 103.6 61 73.8
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 1.2e-20 103.2 66 69.7
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.2e-20 103.2 76 64.5
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 1.6e-20 102.8 68 66.2
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.6e-20 102.8 61 72.1
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 1.6e-20 102.8 78 60.3
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 2.7e-20 102.1 76 59.2
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 2.7e-20 102.1 62 71.0
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 2.7e-20 102.1 77 57.1
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 3.5e-20 101.7 59 74.6
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 3.5e-20 101.7 90 54.4
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 3.5e-20 101.7 69 72.5
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 4.5e-20 101.3 69 69.6
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 4.5e-20 101.3 82 62.2
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 5.9e-20 100.9 64 68.8
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 5.9e-20 100.9 59 74.6
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 5.9e-20 100.9 62 71.0
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 5.9e-20 100.9 62 71.0
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 5.9e-20 100.9 78 60.3
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 5.9e-20 100.9 75 58.7
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 5.9e-20 100.9 61 73.8
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 7.8e-20 100.5 59 72.9
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 7.8e-20 100.5 75 58.7
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 7.8e-20 100.5 69 71.0
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 1.0e-19 100.1 59 74.6
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 1.0e-19 100.1 62 69.4
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 1.0e-19 100.1 59 74.6
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 1.0e-19 100.1 58 75.9
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.0e-19 100.1 82 62.2
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 1.3e-19 99.8 86 57.0
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 1.3e-19 99.8 66 65.2
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 1.7e-19 99.4 59 72.9
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 2.3e-19 99.0 71 63.4
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.9e-19 98.6 69 69.6
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 3.8e-19 98.2 75 62.7
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 3.8e-19 98.2 58 74.1
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 5.0e-19 97.8 62 67.7
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 6.6e-19 97.4 59 71.2
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 1.9e-18 95.9 72 59.7
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 2.5e-18 95.5 58 72.4
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 2.5e-18 95.5 58 72.4
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 2.5e-18 95.5 80 62.5
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 7.3e-18 94.0 83 51.8
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 9.5e-18 93.6 66 62.1
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 2.8e-17 92.0 77 57.1
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 1.0e-16 90.1 72 59.7
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 1.0e-16 90.1 74 51.4
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.4e-16 89.7 63 69.8
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 2.3e-16 89.0 81 53.1
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 3.0e-16 88.6 61 63.9
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 1.3e-14 83.2 59 61.0
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 1.3e-14 83.2 59 61.0
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 2.2e-14 82.4 65 56.9
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 2.9e-14 82.0 65 56.9
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 3.7e-14 81.6 59 61.0
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 1.4e-13 79.7 74 51.4
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 4.1e-13 78.2 68 52.9
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 4.1e-13 78.2 62 58.1
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 4.6e-12 74.7 57 56.1
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 3.9e-11 71.6 59 57.6
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 1.5e-10 69.7 103 38.8
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 1.6e-09 66.2 63 44.4
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 6.2e-09 64.3 81 40.7
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 1.5e-07 59.7 57 45.6
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 7.5e-07 57.4 34 73.5


User provided reference genes

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