Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 2.4e-108 395.6 206 100.0
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 1.4e-36 157.1 181 60.2
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 7.0e-36 154.8 176 53.4
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 2.8e-32 142.9 159 54.1
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 1.2e-27 127.5 190 46.8
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 2.7e-27 126.3 196 41.8
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 7.3e-25 118.2 200 45.0
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 1.2e-24 117.5 165 46.7
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 2.8e-24 116.3 140 48.6
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 2.8e-24 116.3 180 46.1
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 2.8e-24 116.3 189 41.3
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 3.6e-24 115.9 196 42.9
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 4.7e-24 115.5 183 44.8
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 1.8e-23 113.6 133 48.1
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 2.3e-23 113.2 190 44.2
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 4.0e-23 112.5 199 40.7
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 5.2e-23 112.1 216 39.8
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 6.8e-23 111.7 217 38.2
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 2.0e-22 110.2 161 42.9
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 2.6e-22 109.8 218 40.4
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 2.6e-22 109.8 203 39.4
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 7.5e-22 108.2 173 45.1
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 9.8e-22 107.8 217 39.2
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 9.8e-22 107.8 197 41.1
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 9.8e-22 107.8 197 41.1
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 9.8e-22 107.8 175 45.1
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 2.2e-21 106.7 196 41.8
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 3.7e-21 105.9 166 44.6
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 4.9e-21 105.5 157 45.2
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 8.3e-21 104.8 136 47.1
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 1.1e-20 104.4 172 43.6
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 4.1e-20 102.4 213 41.8
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 7.0e-20 101.7 165 43.0
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 9.2e-20 101.3 178 38.8
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 9.2e-20 101.3 172 43.6
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 9.2e-20 101.3 174 38.5
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.2e-19 100.9 168 41.1
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 1.2e-19 100.9 178 40.4
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 2.0e-19 100.1 172 43.6
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 2.7e-19 99.8 213 38.0
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 3.5e-19 99.4 167 44.9
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 7.8e-19 98.2 177 40.1
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 7.8e-19 98.2 214 34.6
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 1.3e-18 97.4 152 39.5
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 1.3e-18 97.4 204 35.8
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 1.3e-18 97.4 182 40.1
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 1.7e-18 97.1 169 39.6
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.3e-18 96.7 210 36.7
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 2.3e-18 96.7 210 36.7
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 2.3e-18 96.7 198 40.4
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 3.0e-18 96.3 160 43.1
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 3.0e-18 96.3 183 38.8
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 3.9e-18 95.9 187 39.6
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 1.1e-17 94.4 169 37.3
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 1.9e-17 93.6 199 36.7
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 1.9e-17 93.6 157 38.9
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 2.5e-17 93.2 142 41.5
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 2.5e-17 93.2 157 38.2
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 2.5e-17 93.2 207 37.2
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 2.5e-17 93.2 170 38.8
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 3.3e-17 92.8 165 41.2
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 3.3e-17 92.8 133 44.4
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 5.6e-17 92.0 165 42.4
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 7.3e-17 91.7 187 40.6
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 9.5e-17 91.3 137 45.3
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 1.2e-16 90.9 137 43.8
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 1.6e-16 90.5 206 34.0
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 2.8e-16 89.7 181 38.1
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 3.6e-16 89.4 199 34.7
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 6.2e-16 88.6 167 35.3
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 8.0e-16 88.2 173 40.5
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 8.0e-16 88.2 197 34.5
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 8.0e-16 88.2 152 40.1
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 1.8e-15 87.0 191 37.7
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 2.3e-15 86.7 217 36.4
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 6.8e-15 85.1 167 36.5
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 8.9e-15 84.7 161 39.8
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 8.9e-15 84.7 182 37.4
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 1.2e-14 84.3 194 38.1
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 1.2e-14 84.3 145 42.1
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 1.5e-14 84.0 179 36.9
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 2.0e-14 83.6 200 35.0
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 5.8e-14 82.0 148 37.2
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 5.8e-14 82.0 162 38.3
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 9.8e-14 81.3 151 37.1
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 1.7e-13 80.5 149 38.3
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.7e-13 80.5 144 38.9
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 2.2e-13 80.1 194 35.6
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 2.2e-13 80.1 149 43.0
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 6.4e-13 78.6 159 35.8
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 8.3e-13 78.2 145 37.9
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 1.9e-12 77.0 160 39.4
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 1.9e-12 77.0 133 40.6
SGA_v2.0_scaffold145G35996 Striga asiatica HOM05D005065 ORTHO05D005944 2.4e-12 76.6 84 52.4
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 5.4e-12 75.5 210 32.9
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 7.0e-12 75.1 150 36.0
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 1.2e-11 74.3 174 37.9
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 1.2e-11 74.3 186 33.3
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 1.2e-11 74.3 163 39.3
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 1.2e-11 74.3 206 35.0
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 1.6e-11 73.9 189 33.9
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 1.6e-11 73.9 189 33.9
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 2.0e-11 73.6 160 38.8
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 2.0e-11 73.6 134 36.6
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 3.5e-11 72.8 170 40.0
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 3.5e-11 72.8 179 39.1
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 3.5e-11 72.8 203 34.0
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 3.5e-11 72.8 175 34.3
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 3.5e-11 72.8 203 34.0
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 3.5e-11 72.8 175 34.3
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 3.5e-11 72.8 155 36.1
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 4.6e-11 72.4 174 36.2
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 4.6e-11 72.4 183 32.8
MBI09_g14012_MAGBIO Magnolia biondii HOM05D005065 ORTHO05D005944 6.0e-11 72.0 164 37.8
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 6.0e-11 72.0 181 36.5
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 6.0e-11 72.0 175 34.3
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 7.8e-11 71.6 170 36.5
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 1.0e-10 71.2 141 35.5
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 1.3e-10 70.9 159 37.1
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 1.7e-10 70.5 208 32.2
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 1.7e-10 70.5 208 32.2
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 1.7e-10 70.5 208 32.2
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 3.0e-10 69.7 161 35.4
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 3.0e-10 69.7 131 33.6
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 3.0e-10 69.7 163 35.0
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 5.0e-10 68.9 177 32.8
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 5.0e-10 68.9 165 35.8
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 8.6e-10 68.2 223 33.2
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.5e-09 67.4 166 33.1
ATR0820G021 Amborella trichopoda HOM05D005065 ORTHO05D005944 2.5e-09 66.6 171 41.5
Rhsim11G0058400 Rhododendron simsii HOM05D005065 ORTHO05D005944 2.5e-09 66.6 155 38.1
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 4.3e-09 65.9 184 32.6
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.2e-08 64.3 177 35.0
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 2.8e-08 63.2 177 35.0
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.8e-08 63.2 146 36.3
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 8.1e-08 61.6 126 41.3
CDE06G2798 Ceratophyllum demersum HOM05D005065 ORTHO05D005944 4.0e-07 59.3 116 38.8
Nitab4.5_0002483g0030 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.5e-06 57.4 142 34.5
Medtr1g096610 Medicago truncatula HOM05D005065 ORTHO05D005944 2.0e-06 57.0 177 34.5


User provided reference genes

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