Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10548 Striga asiatica HOM05D004393 ORTHO05D004897 0.0e+00 1283.9 677 100.0
SGA_v2.0_scaffold118G32462 Striga asiatica HOM05D004393 ORTHO05D004897 9.8e-228 793.9 758 63.2
MSTRG.25436 Avicennia marina HOM05D004393 ORTHO05D004897 1.9e-159 567.0 847 45.6
Migut.C01240 Erythranthe guttata HOM05D004393 ORTHO05D004897 7.0e-133 478.8 760 47.6
Oeu021008.1 Olea europaea HOM05D004393 ORTHO05D004897 4.8e-126 456.1 825 42.2
SalBow7G1128 Salvia bowleyana HOM05D004393 ORTHO05D004897 1.8e-125 454.1 855 42.7
Oeu039591.2 Olea europaea HOM05D004393 ORTHO05D004897 5.9e-116 422.5 847 40.9
Cc00_g08770 Coffea canephora HOM05D004393 ORTHO05D004897 6.1e-97 359.4 793 39.2
CAN.G199.23 Capsicum annuum HOM05D004393 ORTHO05D004897 4.9e-94 349.7 825 36.0
Nitab4.5_0004461g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 2.0e-92 344.4 815 34.4
Nitab4.5_0009001g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 2.0e-92 344.4 850 37.6
Sopen06g023940 Solanum pennellii HOM05D004393 ORTHO05D004897 1.3e-91 341.7 839 34.9
Nitab4.5_0000303g0030 Nicotiana tabacum HOM05D004393 ORTHO05D004897 6.6e-91 339.3 820 34.1
Solyc06g065450.3 Solanum lycopersicum HOM05D004393 ORTHO05D004897 1.9e-90 337.8 838 34.7
Sopen11g009080 Solanum pennellii HOM05D004393 ORTHO05D004897 5.6e-90 336.3 850 34.6
TAR381G1591 Trochodendron aralioides HOM05D004393 ORTHO05D004897 1.2e-89 335.1 784 33.8
Peaxi162Scf00268g01216 Petunia axillaris HOM05D004393 ORTHO05D004897 2.8e-89 334.0 815 34.4
Solyc11g017130.2 Solanum lycopersicum HOM05D004393 ORTHO05D004897 3.6e-89 333.6 849 34.5
Rhsim06G0097300 Rhododendron simsii HOM05D004393 ORTHO05D004897 2.6e-87 327.4 868 33.5
Nitab4.5_0000159g0160 Nicotiana tabacum HOM05D004393 ORTHO05D004897 4.9e-86 323.2 874 36.7
GSVIVG01034506001 Vitis vinifera HOM05D004393 ORTHO05D004897 3.9e-83 313.5 895 32.6
CAN.G61.21 Capsicum annuum HOM05D004393 ORTHO05D004897 5.6e-82 309.7 863 34.0
Peaxi162Scf00495g00119 Petunia axillaris HOM05D004393 ORTHO05D004897 1.2e-81 308.5 873 32.3
Nn5g27793 Nelumbo nucifera HOM05D004393 ORTHO05D004897 5.4e-77 293.1 937 31.6
Gohir.D09G113900 Gossypium hirsutum HOM05D004393 ORTHO05D004897 1.6e-76 291.6 818 32.9
Aqoxy6G00122 Aquilegia oxysepala HOM05D004393 ORTHO05D004897 4.6e-76 290.0 796 33.4
vmacro12498 Vaccinium macrocarpon HOM05D004393 ORTHO05D004897 7.8e-76 289.3 882 31.4
Gorai.006G131600 Gossypium raimondii HOM05D004393 ORTHO05D004897 1.3e-75 288.5 824 32.6
Ciclev10000264m.g Citrus clementina HOM05D004393 ORTHO05D004897 5.1e-75 286.6 892 30.6
Gohir.A09G117000 Gossypium hirsutum HOM05D004393 ORTHO05D004897 4.3e-74 283.5 831 31.8
Potri.013G114700 Populus trichocarpa HOM05D004393 ORTHO05D004897 7.3e-74 282.7 526 39.9
Sabra13G0097000 Salix brachista HOM05D004393 ORTHO05D004897 2.1e-73 281.2 489 41.5
Actinidia23321 Actinidia chinensis HOM05D004393 ORTHO05D004897 5.8e-71 273.1 605 36.5
Hund27078 Selenicereus undatus HOM05D004393 ORTHO05D004897 1.3e-70 271.9 501 39.7
Atru.chr13.1813 Acer truncatum HOM05D004393 ORTHO05D004897 1.7e-70 271.6 492 42.1
Haze_17905 Corylus avellana HOM05D004393 ORTHO05D004897 8.4e-70 269.2 497 39.8
Duzib116G0396 Durio zibethinus HOM05D004393 ORTHO05D004897 8.4e-70 269.2 497 40.8
AUR62004661 Chenopodium quinoa HOM05D004393 ORTHO05D004897 1.1e-69 268.9 938 28.8
Thecc.08G202200 Theobroma cacao HOM05D004393 ORTHO05D004897 1.1e-66 258.8 500 40.2
PGSC0003DMG400009216 Solanum tuberosum HOM05D004393 ORTHO05D004897 3.3e-66 257.3 292 50.7
CSS0013393 Camellia sinensis var. sinensis HOM05D004393 ORTHO05D004897 1.6e-65 255.0 487 43.7
AUR62023578 Chenopodium quinoa HOM05D004393 ORTHO05D004897 2.8e-65 254.2 936 29.0
RcHm_v2.0_Chr6g0272171 Rosa chinensis HOM05D004393 ORTHO05D004897 2.8e-65 254.2 513 43.5
Cfa018204 Carpinus fangiana HOM05D004393 ORTHO05D004897 3.6e-65 253.8 502 38.2
PGSC0003DMG402026117 Solanum tuberosum HOM05D004393 ORTHO05D004897 3.6e-65 253.8 619 34.1
Manes.18G099700 Manihot esculenta HOM05D004393 ORTHO05D004897 4.8e-65 253.4 546 37.4
COL.COLO4_29964 Corchorus olitorius HOM05D004393 ORTHO05D004897 6.2e-65 253.1 523 37.9
Prupe.8G054200 Prunus persica HOM05D004393 ORTHO05D004897 1.8e-64 251.5 591 36.5
PSO170G6764 Papaver somniferum HOM05D004393 ORTHO05D004897 1.3e-62 245.4 936 30.2
TWI60G1027 Tripterygium wilfordii HOM05D004393 ORTHO05D004897 1.7e-62 245.0 480 40.8
CiPaw.16G062700 Carya illinoinensis HOM05D004393 ORTHO05D004897 2.9e-62 244.2 324 46.3
Phvul.004G084400 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 1.1e-61 242.3 312 45.2
Sc01g0001720 Simmondsia chinensis HOM05D004393 ORTHO05D004897 1.1e-61 242.3 308 47.1
arahy.Tifrunner.gnm1.ann1.Y0NS3Z Arachis hypogaea HOM05D004393 ORTHO05D004897 3.2e-61 240.7 978 29.1
QL02p034089 Quercus lobata HOM05D004393 ORTHO05D004897 3.2e-61 240.7 598 38.1
ATR0584G230 Amborella trichopoda HOM05D004393 ORTHO05D004897 5.4e-61 240.0 694 31.0
DCAR_014776 Daucus carota HOM05D004393 ORTHO05D004897 5.4e-61 240.0 354 45.5
PSO782G0828 Papaver somniferum HOM05D004393 ORTHO05D004897 5.4e-61 240.0 935 29.7
arahy.Tifrunner.gnm1.ann1.1646XJ Arachis hypogaea HOM05D004393 ORTHO05D004897 2.1e-60 238.0 977 29.1
MD05G1040500 Malus domestica HOM05D004393 ORTHO05D004897 2.7e-60 237.7 557 34.5
VMungo0464G1718 Vigna mungo HOM05D004393 ORTHO05D004897 6.0e-60 236.5 311 45.3
MBI16_g07683_MAGBIO Magnolia biondii HOM05D004393 ORTHO05D004897 7.8e-60 236.1 252 49.6
FAN20G0457 Fragaria x ananassa HOM05D004393 ORTHO05D004897 3.0e-59 234.2 501 41.1
ClCG09G010400 Citrullus lanatus HOM05D004393 ORTHO05D004897 3.9e-59 233.8 533 36.0
Cpa.g.sc66.57 Carica papaya HOM05D004393 ORTHO05D004897 6.6e-59 233.0 590 33.7
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 8.7e-59 232.6 504 40.9
CANSAT25G3510 Cannabis sativa HOM05D004393 ORTHO05D004897 1.1e-58 232.3 246 53.3
FAN27G3511 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.4e-56 225.3 501 40.7
Glyma.02G074500 Glycine max HOM05D004393 ORTHO05D004897 2.4e-56 224.6 344 41.3
PGR042G3903 Punica granatum HOM05D004393 ORTHO05D004897 1.2e-55 222.2 508 34.8
FvH4_2g12232 Fragaria vesca HOM05D004393 ORTHO05D004897 1.5e-55 221.9 503 39.6
Glyma.16G156500 Glycine max HOM05D004393 ORTHO05D004897 4.5e-55 220.3 293 45.1
Sed0026578 Sechium edule HOM05D004393 ORTHO05D004897 3.8e-54 217.2 579 33.9
Lj2g0019211 Lotus japonicus HOM05D004393 ORTHO05D004897 6.4e-54 216.5 523 35.2
CsaV3_7G024210 Cucumis sativus L. HOM05D004393 ORTHO05D004897 8.4e-54 216.1 518 34.9
THA.LOC104813097 Tarenaya hassleriana HOM05D004393 ORTHO05D004897 1.4e-53 215.3 415 38.1
Lalb_Chr03g0035861 Lupinus albus HOM05D004393 ORTHO05D004897 2.4e-53 214.5 475 33.9
MD10G1046600 Malus domestica HOM05D004393 ORTHO05D004897 4.6e-52 210.3 577 33.1
Lalb_Chr01g0009981 Lupinus albus HOM05D004393 ORTHO05D004897 1.3e-51 208.8 244 47.1
Ah.05g177790 Amaranthus hybridus HOM05D004393 ORTHO05D004897 2.3e-51 208.0 585 32.5
MELO3C023669.2 Cucumis melo HOM05D004393 ORTHO05D004897 5.6e-50 203.4 478 35.6
BcaC04g20233 Brassica carinata HOM05D004393 ORTHO05D004897 7.4e-50 203.0 500 35.2
A10p12670 Brassica napus HOM05D004393 ORTHO05D004897 1.8e-48 198.4 555 33.7
Lj7C297T5 Lonicera japonica HOM05D004393 ORTHO05D004897 4.0e-48 197.2 277 43.0
HPP92_019371 Vanilla planifolia HOM05D004393 ORTHO05D004897 6.9e-48 196.4 314 42.4
AL1G48910 Arabidopsis lyrata HOM05D004393 ORTHO05D004897 1.2e-47 195.7 554 33.4
C09p46070 Brassica napus HOM05D004393 ORTHO05D004897 1.2e-47 195.7 554 33.8
BolC9t57476H Brassica oleracea HOM05D004393 ORTHO05D004897 1.2e-47 195.7 554 33.8
CDE04G2403 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 1.5e-47 195.3 317 39.1
Os11g0171700 Oryza sativa ssp. japonica HOM05D004393 ORTHO05D004897 1.5e-47 195.3 260 44.6
arahy.Tifrunner.gnm1.ann1.MV35XS Arachis hypogaea HOM05D004393 ORTHO05D004897 5.8e-47 193.4 270 44.1
Aa31LG6G8430 Aethionema arabicum HOM05D004393 ORTHO05D004897 1.7e-46 191.8 549 33.9
SHI09053 Sapria himalayana HOM05D004393 ORTHO05D004897 1.7e-46 191.8 858 26.9
AT1G34355 Arabidopsis thaliana HOM05D004393 ORTHO05D004897 2.9e-46 191.0 544 35.8
BraA10t43355Z Brassica rapa HOM05D004393 ORTHO05D004897 2.9e-46 191.0 555 33.2
Phvul.007G090600 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 2.9e-46 191.0 267 43.1
Thhalv10006568m.g Eutrema salsugineum HOM05D004393 ORTHO05D004897 7.1e-45 186.4 578 32.2
CARHR033810 Cardamine hirsuta HOM05D004393 ORTHO05D004897 9.3e-45 186.0 548 33.0
Zm00001eb091700 Zea mays HOM05D004393 ORTHO05D004897 2.1e-44 184.9 258 43.8
BraA08t32845Z Brassica rapa HOM05D004393 ORTHO05D004897 3.5e-44 184.1 681 30.1
Glyma.10G215100 Glycine max HOM05D004393 ORTHO05D004897 3.5e-44 184.1 504 33.1
Lsat_1_v5_gn_4_119261 Lactuca sativa HOM05D004393 ORTHO05D004897 7.9e-44 183.0 711 27.3
A08p08270 Brassica napus HOM05D004393 ORTHO05D004897 3.9e-43 180.6 689 29.8
Carub.0001s3249 Capsella rubella HOM05D004393 ORTHO05D004897 3.9e-43 180.6 557 32.5
Sp1g29580 Schrenkiella parvula HOM05D004393 ORTHO05D004897 1.9e-42 178.3 637 31.7
arahy.Tifrunner.gnm1.ann1.6817V4 Arachis hypogaea HOM05D004393 ORTHO05D004897 2.5e-42 177.9 470 32.3
BcaB07g33130 Brassica carinata HOM05D004393 ORTHO05D004897 3.3e-42 177.6 563 36.4
BcaC07g37547 Brassica carinata HOM05D004393 ORTHO05D004897 3.3e-42 177.6 704 28.8
BolC6t36294H Brassica oleracea HOM05D004393 ORTHO05D004897 3.7e-41 174.1 536 32.3
BraA09t38751Z Brassica rapa HOM05D004393 ORTHO05D004897 3.7e-41 174.1 501 32.9
C06p11600 Brassica napus HOM05D004393 ORTHO05D004897 4.8e-41 173.7 529 32.5
Lj5g0027195 Lotus japonicus HOM05D004393 ORTHO05D004897 4.8e-41 173.7 472 35.2
SEGI_03768 Sequoiadendron giganteum HOM05D004393 ORTHO05D004897 4.8e-41 173.7 205 44.9
BcaC08g43782 Brassica carinata HOM05D004393 ORTHO05D004897 8.2e-41 172.9 535 32.5
A09p32120 Brassica napus HOM05D004393 ORTHO05D004897 1.4e-40 172.2 817 27.8
Ca_10603_v3 Cicer arietinum L. HOM05D004393 ORTHO05D004897 3.1e-40 171.0 273 38.8
Medtr1g096000 Medicago truncatula HOM05D004393 ORTHO05D004897 3.1e-40 171.0 280 40.7
TAR624G0853 Trochodendron aralioides HOM05D004393 ORTHO05D004897 5.8e-39 166.8 154 52.6
VMungo0720G0020 Vigna mungo HOM05D004393 ORTHO05D004897 5.8e-39 166.8 553 30.7
TPR.G1817 Trifolium pratense HOM05D004393 ORTHO05D004897 9.3e-37 159.5 336 34.8
Psat6g185840 Pisum sativum HOM05D004393 ORTHO05D004897 9.7e-34 149.4 239 38.9
ECA232G2172 Erigeron canadensis HOM05D004393 ORTHO05D004897 3.4e-31 141.0 216 36.6
C07p12350 Brassica napus HOM05D004393 ORTHO05D004897 1.3e-30 139.0 237 39.7
BcaB06g26599 Brassica carinata HOM05D004393 ORTHO05D004897 6.5e-30 136.7 276 36.2
A07p08200 Brassica napus HOM05D004393 ORTHO05D004897 3.2e-29 134.4 237 39.7
BraA07t28604Z Brassica rapa HOM05D004393 ORTHO05D004897 3.2e-29 134.4 237 39.7
BolC8t47860H Brassica oleracea HOM05D004393 ORTHO05D004897 9.4e-29 132.9 666 26.9
BcaB04g17878 Brassica carinata HOM05D004393 ORTHO05D004897 1.2e-28 132.5 255 39.6
BcaC06g35663 Brassica carinata HOM05D004393 ORTHO05D004897 1.6e-28 132.1 212 40.6
Dinv01093 Davidia involucrata HOM05D004393 ORTHO05D004897 1.5e-26 125.6 237 37.6
HanXRQChr09g0268931 Helianthus annuus HOM05D004393 ORTHO05D004897 2.2e-25 121.7 348 29.0
PGSC0003DMG401026117 Solanum tuberosum HOM05D004393 ORTHO05D004897 3.7e-25 120.9 101 63.4
AagrBONN_evm.TU.Sc2ySwM_344.4382 Anthoceros agrestis HOM05D004393 ORTHO05D004897 2.6e-23 114.8 202 37.1
AUR62012506 Chenopodium quinoa HOM05D004393 ORTHO05D004897 1.0e-22 112.8 185 42.2
Mapoly0005s0164 Marchantia polymorpha HOM05D004393 ORTHO05D004897 1.3e-22 112.5 311 31.8
Pp3c5_9820 Physcomitrium patens HOM05D004393 ORTHO05D004897 2.2e-22 111.7 201 33.3
Pp3c16_5970 Physcomitrium patens HOM05D043451 ORTHO05D004897 8.5e-22 109.8 194 36.6
TAR624G0562 Trochodendron aralioides HOM05D004393 ORTHO05D004897 8.5e-22 109.8 93 60.2
Pp3c27_1110 Physcomitrium patens HOM05D004393 ORTHO05D004897 5.5e-21 107.1 195 37.9
SMO351G0170 Selaginella moellendorffii HOM05D004393 ORTHO05D004897 4.7e-20 104.0 619 24.9
Glyma.20G176566 Glycine max HOM05D004393 ORTHO05D004897 7.4e-18 96.7 198 36.9
Lalb_Chr24g0401061 Lupinus albus HOM05D004393 ORTHO05D004897 2.8e-17 94.7 200 32.5
BolC7t41736H Brassica oleracea HOM05D004393 ORTHO05D004897 3.1e-16 91.3 167 39.5
BcaB04g17879 Brassica carinata HOM05D004393 ORTHO05D004897 9.1e-16 89.7 91 53.8
EL10Ac1g00069 Beta vulgaris HOM05D004393 ORTHO05D004897 2.6e-15 88.2 151 37.7
CDE12G0855 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 7.7e-15 86.7 115 42.6
Actinidia32880 Actinidia chinensis HOM05D004393 ORTHO05D004897 2.3e-11 75.1 140 40.0
Sabra07G0062600 Salix brachista HOM05D004393 ORTHO05D004897 1.3e-09 69.3 59 61.0
Peaxi162Scf00207g01617 Petunia axillaris HOM05D004393 ORTHO05D004897 8.2e-09 66.6 94 42.6
SMO231G0043 Selaginella moellendorffii HOM05D055046 ORTHO05D004897 5.0e-06 57.4 100 36.0
arahy.Tifrunner.gnm1.ann1.9CDI8S Arachis hypogaea HOM05D004393 ORTHO05D004897 8.5e-06 56.6 45 55.6


User provided reference genes

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